Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755085.1:27662478-27668417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.14 13 7.0 0.7 2 23 47 68 46 68 0.86

2 26 2.6 2.3e+02 3.1 4.6 1 23 74 96 74 96 0.96

3 26 0.0043 0.4 11.8 4.6 2 23 100 121 99 121 0.97

4 26 0.16 15 6.9 0.1 2 23 128 149 127 149 0.90

5 26 0.00014 0.012 16.5 1.4 1 23 158 181 158 181 0.95

6 26 0.015 1.4 10.1 0.7 3 23 192 212 190 212 0.97

7 26 2.1e-05 0.0019 19.1 0.2 1 23 218 240 218 240 0.98

8 26 0.099 9.1 7.5 0.4 1 12 246 257 246 261 0.92

9 26 0.011 0.99 10.5 0.1 3 23 304 324 302 324 0.89

10 26 0.03 2.8 9.1 4.0 1 23 330 352 330 352 0.98

11 26 0.0089 0.82 10.8 0.8 1 21 358 378 358 380 0.79

12 26 9.7e-05 0.0089 17.0 2.9 1 23 386 409 386 409 0.97

13 26 0.00016 0.015 16.3 1.5 1 23 421 444 421 444 0.95

14 26 1.5e-05 0.0014 19.5 0.6 2 23 453 474 452 474 0.97

15 26 0.00015 0.014 16.4 0.2 1 20 480 499 480 502 0.93

16 26 3.6e-05 0.0033 18.3 2.8 1 23 508 530 508 530 0.99

17 26 0.0076 0.7 11.0 0.0 2 22 537 557 537 557 0.95

18 26 0.32 29 5.9 2.3 2 23 590 611 589 611 0.91

19 26 0.17 15 6.8 2.0 1 23 617 639 617 639 0.97

20 26 0.079 7.2 7.8 3.8 1 23 645 667 645 667 0.95

21 26 0.00073 0.066 14.2 2.8 1 23 673 696 673 696 0.98

22 26 0.0006 0.055 14.5 3.8 1 23 708 730 708 731 0.95

23 26 4.4e-05 0.004 18.1 0.3 3 23 742 762 740 762 0.97

24 26 3e-05 0.0027 18.6 0.5 1 23 768 790 768 790 0.97

25 26 0.00034 0.031 15.3 1.6 1 23 796 818 796 818 0.98

26 26 0.0035 0.32 12.1 0.0 1 21 824 844 824 845 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.14	13	7.0	0.7	2	23	47	68	46	68	0.86
2	26	2.6	2.3e+02	3.1	4.6	1	23	74	96	74	96	0.96
3	26	0.0043	0.4	11.8	4.6	2	23	100	121	99	121	0.97
4	26	0.16	15	6.9	0.1	2	23	128	149	127	149	0.90
5	26	0.00014	0.012	16.5	1.4	1	23	158	181	158	181	0.95
6	26	0.015	1.4	10.1	0.7	3	23	192	212	190	212	0.97
7	26	2.1e-05	0.0019	19.1	0.2	1	23	218	240	218	240	0.98
8	26	0.099	9.1	7.5	0.4	1	12	246	257	246	261	0.92
9	26	0.011	0.99	10.5	0.1	3	23	304	324	302	324	0.89
10	26	0.03	2.8	9.1	4.0	1	23	330	352	330	352	0.98
11	26	0.0089	0.82	10.8	0.8	1	21	358	378	358	380	0.79
12	26	9.7e-05	0.0089	17.0	2.9	1	23	386	409	386	409	0.97
13	26	0.00016	0.015	16.3	1.5	1	23	421	444	421	444	0.95
14	26	1.5e-05	0.0014	19.5	0.6	2	23	453	474	452	474	0.97
15	26	0.00015	0.014	16.4	0.2	1	20	480	499	480	502	0.93
16	26	3.6e-05	0.0033	18.3	2.8	1	23	508	530	508	530	0.99
17	26	0.0076	0.7	11.0	0.0	2	22	537	557	537	557	0.95
18	26	0.32	29	5.9	2.3	2	23	590	611	589	611	0.91
19	26	0.17	15	6.8	2.0	1	23	617	639	617	639	0.97
20	26	0.079	7.2	7.8	3.8	1	23	645	667	645	667	0.95
21	26	0.00073	0.066	14.2	2.8	1	23	673	696	673	696	0.98
22	26	0.0006	0.055	14.5	3.8	1	23	708	730	708	731	0.95
23	26	4.4e-05	0.004	18.1	0.3	3	23	742	762	740	762	0.97
24	26	3e-05	0.0027	18.6	0.5	1	23	768	790	768	790	0.97
25	26	0.00034	0.031	15.3	1.6	1	23	796	818	796	818	0.98
26	26	0.0035	0.32	12.1	0.0	1	21	824	844	824	845	0.92

Sequence Information

Coding Sequence: ATGCTCTGTACTGACGTCAGTTTTATACGTATACGAgTGAAAATTGAATCAGACAAGAGCAAGAAGAGAAGAAACGTCAAACTGGAGTTCATCAAGAtcgagaaattcatcaatttgaacgAGGTGCAAGGCCCGCTACCTTGCAAAGCTTGTCCGAAAACATTCTCCAGCCACGTGGACCTGGGTTTCCACTCCAGAATTCACAACGAAGACGGCCTGTACTCTTGCCACCAGTGCGAGTACAGAAAGGATAAGAAATCCTTGTTCAAGAACCACGTCCTCAACCACGATCTCTGGAAATGCGAAAAGTGTGACAAAATATTTAGGAACAAGCGCTGCGCTCTGAAACATTCCAAAACCCACATCACCAAGAGCTTCGTCCAGTGCGAAATTTGCGGCAAAGACGTCAGAAGCGTTTACCTAGACACCCACAAAAAGCTGGTTCATGCAGACGAGAAAAACGTTCAAATTTACAAATGCACGCTCTGCGATAAGGCCTACAAAAATTCTACGGCCCTCAAAGGCCACTATTCCTACAACCACAAAGATTTCGGCATAGACACCTCCGTGATATGCGATATATGTGGGATGAGACTGTCGTGCAAAGGGAAGTTGGCTCAGCATCTCAGAACCCACACGGGAGACAGACCGTTTCCTTGCACCGTCTGTCCCAGGAAGTTCATATCGAAAGACATCCTGAGGGCTCACATGCGGGTACACACTGGGGAGAAGCCGTACGTTTGTATGTATTGCGGGAAAAAGTTTGCGCACGGTGCTCCTTATAGGAAGAAAACTAGACTCTCAAGGGGAAACAATCATAGAGTCAATAAACAGTCCAGAAAGACTCACAGGAAGATATCACAAAAGAAAGTCGCAATAGAACCAGTCCAGCTCCCTCAAGCAATTAACTGCCCAGTTTGTTTGAAATCGTTCACCAACAACGTCGCTTTCGCCTTACACTCAATTGATCACAGTCAGAACAACCAGTATTCCTGTCACCTGTGCGACTTCCAGCTGAAGTCCAAGTACCGCTTCGAGAAGCACGTCAGAGCTCACGAAGGGTCCAATTTTTACAAATGCGAGATCTGCGGCAAGGCTTTCAAGATAGGCACCCACGCACTCGAGCACATCTACTTCCACAGAGGTGAAAAGCCGTTTCAGTGCGAGATTTGCGGCAAGCACTTCATGTACAGCCGCCTGCTGAGCTCCCACAGGCGGCTGTCCCACTACTCAGCGCTCACCGGCTTGCCATTGGTCAAGTTCGACTGCAAGGTCTGCGGCAAGCACTACGAGTCGTACCCCGGCCTGCAGCGGCACATGTACAGCCAGCACAATGACGGCGTCGACAAATCCGTCATGTGCGACGTTTGCGGTAAGAAGATCAAGAACAAGGACAAGTTGAAGTACCACATGCGCATCCATACGGGGGACAAGCCGTTCTCTTGTCTGATCTGCCAGCGCAGGTTCGCTAAGAAGGATCTGCTGCAGGCTCACATGCCTGTGCATACGGGGGAAAAGCCGTATTCCTGCAAGTTTTGCGGGAAAACGTTCGCTCACAGGGCTCCTTTGTGGTACCACAGGAAAACGCACACGGGGGATAGGCCGAATGTGTGTAGGCTTTGTGGCAAAGGGTTCATCTCCAAACCTGCCATGGATAATCATATAAGGACgAAAATCAGAGTTCGCAGGAATATGCAGAACAATGTcgcaaaacaaaataaaaacaaaaaaattccagtCCCTCCAGTCAAACTGGAAGTACCACTGCAGTGTATGACCTGTAATGAATGTTTCCATAATAATGTAGAATTTGCCTTGCATTCCATAGAACACAGTGCAGAAAAGAGGTATTCGTGTCACATTTGTGATTATACGAACAACTCAAAGTATCGAACCGAAGCTCACGTCAGAGTACACGAAGGTTCGTCCAAATACAGTTGCGAGATTTGCCACAAGCAATTCAACATCAGCACTCACGCCACAGAGCACAAGTACGTCCATACCGGGGAGAAGCCTTTCCAGTGCGAAATATGCGGCAAGCATTTCATGTTCTCCAGGATTCTGACCAAACATCGGAGATCAGCCCACTACGAGGTTATTTTCGGAAAACCGCTAGCTAAATACGACTGTAAGATATGCAAAAAGCACTACGAATCGCTGCCCGGCCTACAACGCCACATGTACAGCCACCACAACGACGGCCGCGCCGATTGGTCGGTGATCTGCGACATCTGCGGCAAGAAGATCGCCACCAAAGAGAAGCTCAAGTACCACTTGCGCACGCACACGGGCGACCGGCCGTTCGCCTGCTCCTCCTGCCCCAAGCGGTTCCCCAAGAAGGACCAGCTCAAAGAGCACGAGCGGGTGCACACGGGGGAGAAGCCCTTCGTTTGCGCCTTCTGCGGCAAGATGTTCGGTCATAGAGCGCCGTTCCGTTACCACATCAAAACGCACACCGGGGAGAGGCCCTACAGCTGTCCCATTTGCACAAAGGGGTTCATTTCCAAGGCTGCCAAGGAGGCTCACACTATCACCTGTTTCAGAAGATAA
Protein Sequence: MLCTDVSFIRIRVKIESDKSKKRRNVKLEFIKIEKFINLNEVQGPLPCKACPKTFSSHVDLGFHSRIHNEDGLYSCHQCEYRKDKKSLFKNHVLNHDLWKCEKCDKIFRNKRCALKHSKTHITKSFVQCEICGKDVRSVYLDTHKKLVHADEKNVQIYKCTLCDKAYKNSTALKGHYSYNHKDFGIDTSVICDICGMRLSCKGKLAQHLRTHTGDRPFPCTVCPRKFISKDILRAHMRVHTGEKPYVCMYCGKKFAHGAPYRKKTRLSRGNNHRVNKQSRKTHRKISQKKVAIEPVQLPQAINCPVCLKSFTNNVAFALHSIDHSQNNQYSCHLCDFQLKSKYRFEKHVRAHEGSNFYKCEICGKAFKIGTHALEHIYFHRGEKPFQCEICGKHFMYSRLLSSHRRLSHYSALTGLPLVKFDCKVCGKHYESYPGLQRHMYSQHNDGVDKSVMCDVCGKKIKNKDKLKYHMRIHTGDKPFSCLICQRRFAKKDLLQAHMPVHTGEKPYSCKFCGKTFAHRAPLWYHRKTHTGDRPNVCRLCGKGFISKPAMDNHIRTKIRVRRNMQNNVAKQNKNKKIPVPPVKLEVPLQCMTCNECFHNNVEFALHSIEHSAEKRYSCHICDYTNNSKYRTEAHVRVHEGSSKYSCEICHKQFNISTHATEHKYVHTGEKPFQCEICGKHFMFSRILTKHRRSAHYEVIFGKPLAKYDCKICKKHYESLPGLQRHMYSHHNDGRADWSVICDICGKKIATKEKLKYHLRTHTGDRPFACSSCPKRFPKKDQLKEHERVHTGEKPFVCAFCGKMFGHRAPFRYHIKTHTGERPYSCPICTKGFISKAAKEAHTITCFRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -