Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755093.1:5298842-5300773[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.9e-06 0.00044 21.1 1.9 1 23 14 36 14 36 0.98

2 18 5.2e-06 0.00048 21.0 2.7 1 23 42 64 42 64 0.99

3 18 2.6e-06 0.00024 21.9 2.6 1 23 70 92 70 92 0.98

4 18 0.00037 0.034 15.1 1.6 1 23 98 120 98 120 0.98

5 18 4.8e-05 0.0044 17.9 2.3 1 20 126 145 126 148 0.93

6 18 4.2e-05 0.0039 18.1 3.5 1 23 154 176 154 176 0.98

7 18 0.0016 0.14 13.2 0.2 2 23 183 204 182 204 0.96

8 18 0.0024 0.22 12.6 0.8 1 23 210 232 210 232 0.98

9 18 7.6e-05 0.007 17.3 1.2 1 23 238 260 238 260 0.99

10 18 6e-06 0.00055 20.8 5.0 1 23 266 288 266 288 0.99

11 18 9.3 8.5e+02 1.3 8.1 1 23 294 317 294 317 0.95

12 18 0.032 2.9 9.1 0.7 1 23 346 368 346 368 0.97

13 18 8.2e-05 0.0076 17.2 1.2 2 23 374 395 373 395 0.97

14 18 7.2e-08 6.6e-06 26.8 0.2 1 22 401 422 401 422 0.96

15 18 3.6e-05 0.0033 18.3 2.8 1 23 429 451 429 451 0.98

16 18 0.00016 0.015 16.3 2.1 1 23 561 583 561 583 0.98

17 18 0.00022 0.02 15.9 2.4 1 23 589 611 589 611 0.97

18 18 0.00012 0.011 16.7 1.4 1 23 617 639 617 639 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.9e-06	0.00044	21.1	1.9	1	23	14	36	14	36	0.98
2	18	5.2e-06	0.00048	21.0	2.7	1	23	42	64	42	64	0.99
3	18	2.6e-06	0.00024	21.9	2.6	1	23	70	92	70	92	0.98
4	18	0.00037	0.034	15.1	1.6	1	23	98	120	98	120	0.98
5	18	4.8e-05	0.0044	17.9	2.3	1	20	126	145	126	148	0.93
6	18	4.2e-05	0.0039	18.1	3.5	1	23	154	176	154	176	0.98
7	18	0.0016	0.14	13.2	0.2	2	23	183	204	182	204	0.96
8	18	0.0024	0.22	12.6	0.8	1	23	210	232	210	232	0.98
9	18	7.6e-05	0.007	17.3	1.2	1	23	238	260	238	260	0.99
10	18	6e-06	0.00055	20.8	5.0	1	23	266	288	266	288	0.99
11	18	9.3	8.5e+02	1.3	8.1	1	23	294	317	294	317	0.95
12	18	0.032	2.9	9.1	0.7	1	23	346	368	346	368	0.97
13	18	8.2e-05	0.0076	17.2	1.2	2	23	374	395	373	395	0.97
14	18	7.2e-08	6.6e-06	26.8	0.2	1	22	401	422	401	422	0.96
15	18	3.6e-05	0.0033	18.3	2.8	1	23	429	451	429	451	0.98
16	18	0.00016	0.015	16.3	2.1	1	23	561	583	561	583	0.98
17	18	0.00022	0.02	15.9	2.4	1	23	589	611	589	611	0.97
18	18	0.00012	0.011	16.7	1.4	1	23	617	639	617	639	0.97

Sequence Information

Coding Sequence: ATGGTGAGTCATCTTCGAGGTCCCACTGGGGTGAAACAATTCAAATGTGATATTTGCCATAAGGAATTCATATCAAGAAGTAAATTAGTCAGACATACCATAGTTCACACGGAGGAAAAACCATTTCAGTGTGATATTTGCCAGAAAAAGTTCAGCATGAAACAGCATCTTGTGAGTCACATAAAAGTGCACACTGGCGtgaaaccattcgaatgtgGTATTTGTCATAAGAAATTCATATCGAGAAGTAAGCTAGTTAGACATACCAGAATTCACACTGGGGAAAGACCATTTCAGTGCGATATATGTCATAAGAATTTCAATTCTGGAAGCATTCTGGTGAGACATACCAGGATTCACACAGGCGAAAGACCATTCCAGTGCGATGTTTGccagaaaaaattcatttcgaaacacCATTTGATCAGTCACATTCCAGTTCACACTGGCGtgaaaccattcgaatgtgagATTTGTCATAAGACATACATGTTCAAGAGCACTCTGATTAAACATACCAGAGAACACACTGGAGAAAAATCAATCCAATGTGACATCTGTCAGGATAAATTCACATCCAAAGAGGATCTGTTGAATCATGTTACAGTGCACACTGGCGCGAAACCTTTCGAATGCGATATTTGTCATAGGACATACTTGTTGGAGAGCAGTCTGGTCAAACATGTCAGAGTACACACCGGAGAAAAACAATTCCAATGTGACATCTGTGAAAATAGATGCTCTTCCAAAGACGATCTGGTGAATCATATTTCAACGCACACTGGAGTGAAACCATTCCAGTGCGATATTTGCGAGAAGAAGTTCAATATGAAACACCATCTGCTGAGTCATATGAGAGTACACAGTGACGTGAAACCATTCGAATGTCATATTTGTCATTTGAAAACTAGATGGAAATGCACTCTCATCAAACATGTGCACAGGATACACACAAAACCATTCCAATGTCAGGAACAGTACGTAGCGAAAACAGATCTGGTTGATCATAATGAAACGCACACTGGCGAGAAACCATTTGAATGTAACATTTGTCAAACAAATTTCTGGTGGAAGGGCGATCTAGAAAAACATATCTGTGTGCATGACAGAAAACGTATCAAATGTGACTTTTGCCATAAGGTCTTTAACTGGAAGAGCGATTTGGTCACACATATCAGAGTACATACGGGCGAAAAACCATTTGAGTGCGACATTTGTGGGAAAAGGTTCAATTCATCAAGTGATTTGAAGGATCATATGAGAGTGGAAGTCGATGGGATATCATTCGAATGTTACATCTGTCACAAGGAATTCAACTTGAAGAACTCTCTGAGCAGCCATATGAGAATACACATGATCgaaagaatattcaataaaaaaatattggtaaATGATAAACAGGAGGAAttggaatataaaaataaatctacTTATCTCATGGGAACTCAGCTAAAGAACGAATTAGGGAAAACTTTCAATGATCCGGTGGaaataaaagaagaaaaaacagaatCACAGGATCTCATCTGTCCAACAAACACCAAGCTGGAAGATCTGTCCGCGATGAGCGAATGTGATATCAAAATCGAGTATAATGAACTACCGTACGGTGATATGGAACAACTTcttgatgaagaaaatcaaatggGTGATATTCAGTTGCACACTGGCGTGAAACAATTCGAATGTGATATCTGCCATAAAGAATTCAAATGGAGAAGCAAACTGATAAGTCATACCAGAGTTCACACGGGGGAAAAACCATTCCAGTGTGATATTtgcctgaaaatgttcaacatgAAACACAATCTGATGAGTCATTCACAAGTGCACGCTGGTGTGAAACCATTCAAATGTGATATTTGCCATAAAAAATACGCGTTGAAGGGCAGTCTGATCAAACATGCCAAAGGACATACTGTGTCACACTGA
Protein Sequence: MVSHLRGPTGVKQFKCDICHKEFISRSKLVRHTIVHTEEKPFQCDICQKKFSMKQHLVSHIKVHTGVKPFECGICHKKFISRSKLVRHTRIHTGERPFQCDICHKNFNSGSILVRHTRIHTGERPFQCDVCQKKFISKHHLISHIPVHTGVKPFECEICHKTYMFKSTLIKHTREHTGEKSIQCDICQDKFTSKEDLLNHVTVHTGAKPFECDICHRTYLLESSLVKHVRVHTGEKQFQCDICENRCSSKDDLVNHISTHTGVKPFQCDICEKKFNMKHHLLSHMRVHSDVKPFECHICHLKTRWKCTLIKHVHRIHTKPFQCQEQYVAKTDLVDHNETHTGEKPFECNICQTNFWWKGDLEKHICVHDRKRIKCDFCHKVFNWKSDLVTHIRVHTGEKPFECDICGKRFNSSSDLKDHMRVEVDGISFECYICHKEFNLKNSLSSHMRIHMIERIFNKKILVNDKQEELEYKNKSTYLMGTQLKNELGKTFNDPVEIKEEKTESQDLICPTNTKLEDLSAMSECDIKIEYNELPYGDMEQLLDEENQMGDIQLHTGVKQFECDICHKEFKWRSKLISHTRVHTGEKPFQCDICLKMFNMKHNLMSHSQVHAGVKPFKCDICHKKYALKGSLIKHAKGHTVSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -