Gpol011063.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gastrophysa polygoni
Gene Symbol
-
Assembly
GCA_963576655.1
Location
OY755085.1:27680259-27685190[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.1 98 4.3 0.3 2 23 79 100 78 100 0.83
2 26 0.086 7.9 7.7 6.0 1 23 106 128 106 128 0.99
3 26 0.0017 0.16 13.1 1.2 1 23 134 156 134 156 0.95
4 26 6.8e-05 0.0062 17.5 4.9 1 23 162 185 162 185 0.98
5 26 0.19 17 6.6 1.2 6 23 202 220 197 220 0.89
6 26 0.00057 0.052 14.6 0.7 3 23 231 251 229 251 0.97
7 26 5.8e-07 5.4e-05 24.0 1.2 3 23 259 279 258 279 0.99
8 26 2e-06 0.00018 22.3 0.4 1 23 285 307 285 307 0.99
9 26 0.035 3.3 8.9 0.7 3 19 316 332 314 332 0.96
10 26 7.7 7e+02 1.6 1.3 2 23 407 428 406 428 0.84
11 26 0.0093 0.86 10.7 1.6 1 21 462 482 462 484 0.84
12 26 5.8e-06 0.00053 20.8 2.1 1 23 490 513 490 513 0.97
13 26 0.00019 0.017 16.1 5.1 1 23 525 547 525 548 0.94
14 26 0.0044 0.41 11.8 0.8 3 23 559 579 558 579 0.98
15 26 3.3e-05 0.003 18.5 0.6 1 23 585 607 585 607 0.97
16 26 3.3e-05 0.003 18.5 2.6 1 23 613 635 613 635 0.98
17 26 0.00038 0.034 15.1 0.2 1 21 641 661 641 662 0.94
18 26 0.08 7.3 7.8 2.0 2 14 724 736 723 745 0.80
19 26 0.2 19 6.5 0.7 1 23 751 773 751 773 0.97
20 26 0.011 0.98 10.6 1.3 1 23 779 801 779 801 0.88
21 26 8.2e-06 0.00075 20.4 2.3 1 23 807 830 807 830 0.97
22 26 0.015 1.3 10.1 3.9 1 23 842 865 842 865 0.96
23 26 2.3e-05 0.0021 19.0 0.2 3 23 876 896 874 896 0.97
24 26 4.4e-06 0.0004 21.2 0.9 1 23 902 924 902 924 0.96
25 26 3.8e-05 0.0035 18.3 0.6 1 23 930 952 930 952 0.97
26 26 0.0021 0.19 12.8 0.7 1 21 958 978 958 979 0.95

Sequence Information

Coding Sequence
ATGTCCTATGGCGAAACCCGTTTGAGGGAAATAAAATCAGAAGATCCAGATGAATGCGAGACACAGTCGAACGCAAAAAATCAATCGAAAAGGGGCAGGAAGAAAGGCAGCAAGAACAAACCCAAAGACAACGACGAAACAAGAAAGAAACAGCAAAAGTCCAGGCGCAAAAACGACAGcccaaagaaaataatattagcCCATCCACCGCCCATGGAACTAGACGAACCAATCCAGTGCGACATATGCAGCAACTCCTACACCAACAACGTGGATTTCGCGTTCCACTCGCTGAGCCACAGCGACGATGGCAAATACACCTGTCACATGTGCAACTACAGGAACAGCTCCAAGTACCACGTGGAGATGCACGTGAGGACCCACGAAGGCACCACGAAATACAAGTGCGAGATCTGCGACAAGGCGTTCTCCATCAGCACGCACGCCATCGAGCACAAGAACTTCCACACGGGAGAGAAGCCCTTCCAGTGCGAGATCTGCGGCAAGCACTTTATGTTCTCCTGGCATCTGTCCTCGCACAGGCGCACCTCGCACTACGAGATCCTCACCGGCAAGCCGTTGATCAAGTTCGATTGCATCGCTTGCAACAAGCACTACGAGTCGGCCAGCGGCCTCAGGCGCCACAACATCAAGAAACACAAGTTCAACGAGATCGATCTGTCGGTGATATGCGAGATTTGCGGCAAGAAGCTCTCCAGCAAGGAGAAGCTCAAGTTCCACTTGCGGACCCACACGGGATACAAGCCGCACGGCTGCCACGTGTGCCCCAAGAGCTTCTCCAAGAAGGACCAGCTGATCGAGCACATCCGCACTCACACTGGAGAGAAGCCGTACGTGTGCAAGATCTGCGGGAAGGGGTTCGCTCAGAGGACTCCGTTGAAGACCCACGAGCGGACTCACAATGTGGACAGGCCGGGCACTGCTTGCACGATTTGCGGTTGCGTGTTCAGGTTGCGGTACGAGTTTGAGAACCACCCCCTGAGTGACATCCCGAACGCACGGGTTTTGAGGCACTTTGTACTTATGACACTTGTTATTTTTAGaagtttgaaaaacaaaagtattCTCCGAAAGAGGAACAAAAGAAAGAAATTGTTAGTCACTGGTGAGGAACCtcacaaacaaaaaaatctcaaaacgATTAATCCCAAGCTGCCAAAATTGATAGTGAGACCCACCGAATTGGATGTCCCTATTACTTGCCAATCCTGCACTTTGTCGTTCAACAACAACCTGGACTTTGCCTTCCACTCGAAGAAGCATAGCGATAACGGTACCTACAGTTGCCACATGTGCTACTACCACCACAAAACTAAGTCCATATTCGAACTCCACATCAGAGCCCACGAGggcatcaaaaaatacaaatgcgAGATGTGCAGCAAGACCTTCAAGAGGAGTTTGGACGCTGCGGAGCACAAATACTTCCACTCTGGCGAAAAACCCTTCCAGTGCGAAATATGCGGCAAGCATTTCAGCTTCACCAGCTCTCTAGTCAATCATAGACGTCTGGTCCACTATGAGATCGTCACCGGGCATAAGCTGGACAGATACGATTGCAAAAAATGCGACAAACACTACTCCACCCAGTCAGGGCTTATCAGGCACAACTCCTCCCACCACAAGGAGCTGGGTTGCGATCTCTCAGTGCTATGCGACATTTGTGGGAAGCGTATAGCGACCAAAAGCAAGCTGAAGTTTCACTTACAGACTCACACCGGGGCCAAACCTCACGTGTGCAAGATGTGCCCTAAGGGTTTCGCGAAGAAAGAGCAATTGGCTAGTCACGAGAGAATCCATACCGGGGAGAAACCATTTTCTTGTTCAGTGTGCGGCAAAAGGTTCGCTCAGCATTCACCCTACAACTACCACATGAAAATGCACAACGGAGAGAAAAAGCATATCTGCATGATATGCGGTAAATCGTTCATCGCTCTTAGTAGTATGAAGAATCATATGAAGATCTGTGATAGTTATAAAGTATATATTAAAACTATCGATAAcaacaaaaaacgaaaatacatAAGGCGGAAATCAAAGAGTGACAATCCAGGAGACCAAAGCAAGCTGAAGAAAAGGCGGCCACGTGACCCCACCGAAAAGACCTTAAAAATAATCGCCAAACCAATAGAACTAGACGACCCCTTGGAGTGCAAGCACTGCGAAAAAACGTTCACCAACAACCTAGACTACGGCTTTCACTCGAAAAAGCACGATCCCCAGGGTCAGTACACCTGCCACCTGTGCTCCTACGCCAACGTTTCCAAAGCCCCCTTCGAGATACACATGCGCGACCACGAAGGCATCAACAAGTTCAAATGTCCCTTGTGCGTTAAGACCTTCCGCCAAAGCAGGGACGCCGTCGAGCACAAGTACTTCCACACGGGGGAAAAGCCCTTCCAGTGCGAGATATGCGGCAAGCACTTCTCCTACACGAAGAGCCTCGCCGCCCATCGGCGCAACTCGCACTACGAGGTCATCACCGGCAAGCCGCTGAAGAAGTACGACTGCAAGGTCTGCTCGAGGCACTACGAGAGCCACTCGGGCCTAGTGCGGCATTACTCCTCCACGCACCAAGAGCTGGGCTACAACTACTCGGTGATATGCGACATCTGCGGCAAAACCATCGCCACGAAGAACAAGCTCAAGTACCACATGCGGGTGCACACGGGGTACAAGCCGCATGCGTGCAAAGTGTGCGGCAAGGCGTTTTCCAAGAAGCAGGAGCTCAACATTCACGAGAGGGTGCACACGGGGGAGAAACCGTTCGCTTGTTCGTACTGCGGGAAGAAATTCGCGCAGCTAGCGCCTTATAGGTACCATATCAAGACGCATACAGGGGAGAAGACCCATGTCTGCAGGATATGCAACAAGGGGTTCATCGCTTTGAGCAATATGAAGATTCATATGAAGCACTGCCGAGTCATGAAGGCTGAACCGTTATAA
Protein Sequence
MSYGETRLREIKSEDPDECETQSNAKNQSKRGRKKGSKNKPKDNDETRKKQQKSRRKNDSPKKIILAHPPPMELDEPIQCDICSNSYTNNVDFAFHSLSHSDDGKYTCHMCNYRNSSKYHVEMHVRTHEGTTKYKCEICDKAFSISTHAIEHKNFHTGEKPFQCEICGKHFMFSWHLSSHRRTSHYEILTGKPLIKFDCIACNKHYESASGLRRHNIKKHKFNEIDLSVICEICGKKLSSKEKLKFHLRTHTGYKPHGCHVCPKSFSKKDQLIEHIRTHTGEKPYVCKICGKGFAQRTPLKTHERTHNVDRPGTACTICGCVFRLRYEFENHPLSDIPNARVLRHFVLMTLVIFRSLKNKSILRKRNKRKKLLVTGEEPHKQKNLKTINPKLPKLIVRPTELDVPITCQSCTLSFNNNLDFAFHSKKHSDNGTYSCHMCYYHHKTKSIFELHIRAHEGIKKYKCEMCSKTFKRSLDAAEHKYFHSGEKPFQCEICGKHFSFTSSLVNHRRLVHYEIVTGHKLDRYDCKKCDKHYSTQSGLIRHNSSHHKELGCDLSVLCDICGKRIATKSKLKFHLQTHTGAKPHVCKMCPKGFAKKEQLASHERIHTGEKPFSCSVCGKRFAQHSPYNYHMKMHNGEKKHICMICGKSFIALSSMKNHMKICDSYKVYIKTIDNNKKRKYIRRKSKSDNPGDQSKLKKRRPRDPTEKTLKIIAKPIELDDPLECKHCEKTFTNNLDYGFHSKKHDPQGQYTCHLCSYANVSKAPFEIHMRDHEGINKFKCPLCVKTFRQSRDAVEHKYFHTGEKPFQCEICGKHFSYTKSLAAHRRNSHYEVITGKPLKKYDCKVCSRHYESHSGLVRHYSSTHQELGYNYSVICDICGKTIATKNKLKYHMRVHTGYKPHACKVCGKAFSKKQELNIHERVHTGEKPFACSYCGKKFAQLAPYRYHIKTHTGEKTHVCRICNKGFIALSNMKIHMKHCRVMKAEPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-