Gpol001561.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- clz9
- Assembly
- GCA_963576655.1
- Location
- OY755082.1:25268878-25270446[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-07 0.00018 21.7 0.1 4 42 21 60 18 61 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGAACATATAAGAAGGTGCTGGGAGCCAAGCATTATGGCAATTACTCAGATTCTGCGCTAAAAAAAGCTATAGAAGCTGTGCGAAGCAAACGGATGACTTACAGGAGTGCTTCTGAGGCTTTTCAAGTGCCAATAGCAACGCTTtgcaacaaaatgaaaaataaacatccCATGCGTCCTGGAGGTCTTACAGCGTTAAGCCAAGAAGAAGAGCTTAGTCTTCGTTCTGGAATTGAAAAGGCTGCAGAATGGGGCTTTCCCCTTACAAGAATGGACATCCGAACGCTGGTGAAGCAATTCCTTGATGCCCAAGGTAAGAGAGTTAAGTGTTTCAAGGAAAACATGCCCGGCCTAGATTGGttttataaatttttgaaaataaatcctgTTTTAACGGAACGTATGTGTCAAAACATTAAGCGTTGTCGAGCTGAGTTGTCTCCTGAAATTATTCATGcttattttgacaatttgtcACAAATTATACAGGATGTGCCAGCATGCAACATAATTAACTATGATGAAACAAATCTATGTGACGACCCTGGAAGAACCAAAGTGGTTTGTAAAAGGGGCACGAAATATGTGAATAGAATATTAGATTCTAGCAAATCCAGCACATCTATAATGGTTTCAGCGACTGGGTCTGGAAAACTATTGCCTGCTTATGTTGTATATAGAGCACAACATCTTTACCCCACTTGGACAGAAAATGGTCCTGATAATGCAGTGTACAATCGCACCAAAAGTGGTTGGTTCGAAGGCGCTGTTTACGAAGACTGGTTTGAGAAAGTAGCTTTaccttattttcgaaaatgcacAGGTAGAAGAATTTTAATTGGTGACAATTTGTCCAGTCACCTTTCAATCAGAGTTATACAACTCTGCGAACAGAACAACATCGAGTTTATACTTGTGCCGCCTAACGCCACCCATCTATTACAACCTTTGGATGTAGCTTTCTTTGctccattcaaaaaaatctggagaaaGTTACTGACGGAATGGAAGCAAAAAAATAGAGGCGTCCTCCCTAAGTCCGATTTTCCAAGATTGTTAAAGAAATTATTTGACAATGTGGAGCTTAATGCTGCAAAAAACATCATTTCCGGTTTCAGGGCTAGCGGTATAATTCCGTGTGATAGAAATGTTGTTTTAAATAAACTTCCGAAACTAACAGAAGAACAACTGGAACAACAGCAAAACCAGGCTGAAATCGATCGACGCTGGAGTTCAACTTTTGTTAATTTCATGAAAGAATCAAGGACTCTGGAAACCAAACAGAACATAAAACGGggcaaaaaaattaatgtaaCACCAGGAAAAGGAATAAGAGCAAGAGATTTAGGTGAAACTTCAGCTTCAAGAgaacaacactggcgacgagcAGCACTGGCGACGAGTTTCTTATCGAATCTGATCAGTCCGACAAGGAAGAAAGTGGAGATGATCATTCTGACATGGAAGAAAATGGAGATGATCATTCTGACATGGATGAGTTTATTCCAGGAACTAATAACCCACAAGACTCTAGTTTTGAAGATATCACTGACCAAAACTTAA
- Protein Sequence
- MVRTYKKVLGAKHYGNYSDSALKKAIEAVRSKRMTYRSASEAFQVPIATLCNKMKNKHPMRPGGLTALSQEEELSLRSGIEKAAEWGFPLTRMDIRTLVKQFLDAQGKRVKCFKENMPGLDWFYKFLKINPVLTERMCQNIKRCRAELSPEIIHAYFDNLSQIIQDVPACNIINYDETNLCDDPGRTKVVCKRGTKYVNRILDSSKSSTSIMVSATGSGKLLPAYVVYRAQHLYPTWTENGPDNAVYNRTKSGWFEGAVYEDWFEKVALPYFRKCTGRRILIGDNLSSHLSIRVIQLCEQNNIEFILVPPNATHLLQPLDVAFFAPFKKIWRKLLTEWKQKNRGVLPKSDFPRLLKKLFDNVELNAAKNIISGFRASGIIPCDRNVVLNKLPKLTEEQLEQQQNQAEIDRRWSSTFVNFMKESRTLETKQNIKRGKKINVTPGKGIRARDLGETSASREQHWRRAALATSFLSNLISPTRKKVEMIILTWKKMEMIILTWMSLFQELITHKTLVLKISLTKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00739885;
- 90% Identity
- iTF_00739885;
- 80% Identity
- -