Gpol001696.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755082.1:26677034-26678119[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-07 0.0001 22.4 0.0 2 36 18 51 17 57 0.91 2 2 0.83 6.7e+02 0.7 0.0 21 37 79 96 77 102 0.82
Sequence Information
- Coding Sequence
- aTGGGGAAACATACCAGAATACTTGGCAGCAGAAAATACAAGGActataatgatgaaaaactgGATGATGCCCTACGTTATATGAGGAATGGTATGAGCTCAAGAGATGCTGAAAGACAATTCAACATTCCTAGAAAAACTCTCCTGAATAAATTACGAAATGCACATCTAGGAACTGTGGGACACCCTACTGCTTCATCGGAAGTCGAGGAGAGGCACTTTGTCGACGTGCTCAAAGCAAGTGCTGAGTACGGCAGTCCTATGACTGTTTTAGACCTGAGAATGGTCGTGAAACATTATTTGGATAAGAAAGGCGTCACTCTGTCCACTTTCAAAAACAATTTACCTGGCCTCGATTGGTGCAAAAATTTTCTAAAACGGCACAAACATCACCTAACGAAACGTCAGTGCCAAAACATTAAGAGGAGTCGAGCTCACAAGactgatgaagaaataatttcatatttcaataatctAGAAGAAACTCTAGCTGGTGTCGATCCTAAATGGATTGTTAATTACGATGAGACCAACCTGAGTGATGACCCAGGGTCGAAAAAGTGTATATTTTCTAGAGGAACCAAATACCCTGAACAAAACATGAATTTCTCAAAAAGTGCCATATCGTTGATGTTTGCAGTAACTGCTGACGGAAAATCACTGCCAATTTATGTGGTCTATGAAGCAGAAAGATTATATGATAGATGGGTCATGGGAGGACCACCGGGCACTTTATATAACAGAACCAAATCTGGGTGGTTTGATGCCCCAACTTTTGAAGACTGGTTCACAAGAGTAATCATTCCCTGGGCCCAAAAAACGAATGAACGGAAAGTGATTATAGGTGATAACCTATCATCacatttgaatattgatgttcTCAGAATGTGCCAGcgacaaaatatcaaattcgtATTCCTACCGCCAAATGCAACACATTTGACGCAACCCTTGGATATTGCTTATTTCCGACCACTTAAAGGAGCATGGAGGGAAATTCTTCGAGATCTTGAACTTCAGCATCCCAAACTGAACTGCGTTGAGAAAACAGTTTTTCCACAATTGCTCAAAAAGCTTTGGACATGA
- Protein Sequence
- MGKHTRILGSRKYKDYNDEKLDDALRYMRNGMSSRDAERQFNIPRKTLLNKLRNAHLGTVGHPTASSEVEERHFVDVLKASAEYGSPMTVLDLRMVVKHYLDKKGVTLSTFKNNLPGLDWCKNFLKRHKHHLTKRQCQNIKRSRAHKTDEEIISYFNNLEETLAGVDPKWIVNYDETNLSDDPGSKKCIFSRGTKYPEQNMNFSKSAISLMFAVTADGKSLPIYVVYEAERLYDRWVMGGPPGTLYNRTKSGWFDAPTFEDWFTRVIIPWAQKTNERKVIIGDNLSSHLNIDVLRMCQRQNIKFVFLPPNATHLTQPLDIAYFRPLKGAWREILRDLELQHPKLNCVEKTVFPQLLKKLWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -