Gpol005307.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755083.1:25314393-25314932[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-08 3.7e-05 23.9 0.0 2 36 18 51 17 57 0.91 2 2 0.31 2.5e+02 2.0 0.0 21 38 79 97 77 103 0.83
Sequence Information
- Coding Sequence
- ATGGGGAAACATACCAGAATACTTGGCAGCAGAAAATACAAGGActataatgatgaaaaactgGATGATGCCCTACGTTATATGAGGAATGGTATGAGCTCAAGAGATGCTGAAAGACAATTCAACATTCCTAGAAAAACTCTCCTGAATAAATTACGAAATGCACATCTAGGAACTGTGGGACACCCTACTGCTTCATCAGAAGTCGAGGAGAGGCACTTTATCGACGTGCTCAAAGCAAGTGCTGAGTACGGCAGTCCTATGACTGTTTTAGACCTGAGAATGGTCGTGAAACATTATTTGGATAAGAAAGGCGTCACTCTGTCCACTTCCAAAAACAATTTACCTGGCCTCGATTGGTGCAAAAATTTTCTAAAACGGCACAAACATCACCTAACGAAACGTCAGTGCCAAAACATCAAGAGGAGTCGAGCTCACAAGactgatgaagaaataatttcatatttcaataatctAGAAGAAACTCTAGCTGGTGTCGATCCTAAATGGATTGTTAATTACGATGAGACCAACCAGTGA
- Protein Sequence
- MGKHTRILGSRKYKDYNDEKLDDALRYMRNGMSSRDAERQFNIPRKTLLNKLRNAHLGTVGHPTASSEVEERHFIDVLKASAEYGSPMTVLDLRMVVKHYLDKKGVTLSTSKNNLPGLDWCKNFLKRHKHHLTKRQCQNIKRSRAHKTDEEIISYFNNLEETLAGVDPKWIVNYDETNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -