Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1e-13 8.1e-11 42.0 0.0 4 39 29 64 26 69 0.92

2 3 9.2 7.4e+03 -2.7 0.0 23 28 113 118 111 121 0.77

3 3 3.8 3.1e+03 -1.5 0.0 33 43 134 144 134 145 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1e-13	8.1e-11	42.0	4	39	29	64	26	69	0.92
2	3	9.2	7.4e+03	-2.7	23	28	113	118	111	121	0.77
3	3	3.8	3.1e+03	-1.5	33	43	134	144	134	145	0.86

Coding Sequence: atGATAACCGTAACATTTCATATCGTTTTAGGAAAGAACAATCAGCGAAAAATCAAACGCCGAAGGGGAGACTGGACAGGAAATCAGCTTCTAGAAGCAGCCAATGCAGTTCAAAGCGGCAGTATGAGCTACAACGAAGCTGCCAGGAACTTCGATGTCCCGGCTGCTACATTGAAAAGACGTATAAAAAACAACGATCTGGAAAAAAGGAGTTTGGGACCGCCATGTTTGCTGGGACCTGACATCGAAAAAGTGATAAAAGCTCACATCGAAGAGCTTAAAAAGAATGGTGTAGCTATCACTGGGAAATACGTGAGGTCGATGGCTTTCAGAATGGCTGAGAAATATGATATCAAGAATTCGTTCAACAAGAAGGAACGGTTGGCCGGTCATGATTGGCTGCATATGTTCCTCAGAAGACATCCGGACCTCACACTCTGA
Protein Sequence: MITVTFHIVLGKNNQRKIKRRRGDWTGNQLLEAANAVQSGSMSYNEAARNFDVPAATLKRRIKNNDLEKRSLGPPCLLGPDIEKVIKAHIEELKKNGVAITGKYVRSMAFRMAEKYDIKNSFNKKERLAGHDWLHMFLRRHPDLTL

Sequence clustering based on sequence similarity using MMseqs2