Basic Information

Insect: Gastracanthus pulcherrimus
Gene Symbol: -
Assembly: GCA_949152435.1
Location: OX424576.1:167883173-167896467[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0083 2.5 11.1 0.3 2 20 98 116 97 118 0.94

2 14 0.0015 0.43 13.5 1.3 2 23 126 148 125 148 0.92

3 14 0.012 3.7 10.5 6.9 1 23 227 250 227 250 0.94

4 14 0.2 59 6.8 0.1 2 21 261 280 260 281 0.92

5 14 0.00024 0.071 15.9 1.9 1 23 288 311 288 311 0.98

6 14 0.019 5.5 10.0 0.3 2 21 367 386 366 387 0.93

7 14 0.079 23 8.0 3.5 1 23 395 418 395 418 0.97

8 14 0.0011 0.32 13.9 1.5 1 19 427 445 427 448 0.94

9 14 1.2 3.7e+02 4.3 2.0 1 23 498 521 498 521 0.93

10 14 0.02 5.8 9.9 0.1 2 20 531 549 530 551 0.93

11 14 0.0017 0.5 13.3 3.0 2 23 559 581 558 581 0.96

12 14 0.011 3.3 10.7 0.2 2 20 596 614 595 616 0.92

13 14 0.049 14 8.7 1.7 2 23 624 646 623 646 0.93

14 14 1 3e+02 4.5 0.5 2 13 657 668 656 677 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0083	2.5	11.1	0.3	2	20	98	116	97	118	0.94
2	14	0.0015	0.43	13.5	1.3	2	23	126	148	125	148	0.92
3	14	0.012	3.7	10.5	6.9	1	23	227	250	227	250	0.94
4	14	0.2	59	6.8	0.1	2	21	261	280	260	281	0.92
5	14	0.00024	0.071	15.9	1.9	1	23	288	311	288	311	0.98
6	14	0.019	5.5	10.0	0.3	2	21	367	386	366	387	0.93
7	14	0.079	23	8.0	3.5	1	23	395	418	395	418	0.97
8	14	0.0011	0.32	13.9	1.5	1	19	427	445	427	448	0.94
9	14	1.2	3.7e+02	4.3	2.0	1	23	498	521	498	521	0.93
10	14	0.02	5.8	9.9	0.1	2	20	531	549	530	551	0.93
11	14	0.0017	0.5	13.3	3.0	2	23	559	581	558	581	0.96
12	14	0.011	3.3	10.7	0.2	2	20	596	614	595	616	0.92
13	14	0.049	14	8.7	1.7	2	23	624	646	623	646	0.93
14	14	1	3e+02	4.5	0.5	2	13	657	668	656	677	0.71

Sequence Information

Coding Sequence: ATGCTGTGTACCCCGAGTGTTCTCGTCTGGGAGAGCTGCAACGCGAGCAAAAAATCCGTGGCCGACCAAGCGAAAACTCAATGCGAGATATGTCACAAGCAAATGAAGTGCCAGTGCCTGAAATACGATATTCAGCCGATTGTCTCCGCCGGTAAGTTCTATTCCAATCCGAAGTTCAAATACGGCGAGCCCGAATTCGACCACTGCGACTACCGAAACAAGATCAAGATAAACTCGCGTCGTCACACACTGGACGATCACACCGATAAAGTGGACGAGGATAGACTCGTCGAGTGTGACAAATGCGGCGGTAAGTTCAGCGGCAGGAAGAATATGCAGAAACACCGGAGTCTTTGCGGCTTGGCGCCGTTCTTGAAGTGCGACTTCTGCAACTACGAGTCGAAGTTCAAATCGAATCTGAATAGACACTTGGCGGCTAAGCACAGGAATTTGAAGGGAGGAGAGAACCAGAAGGAATACACGCTGGGTACCACGACCGTTCTCGTCTGCGAGAGCTGCAACGCGACCAAAAAATCCGTGGCCGACCGAGCGAAAACTCTATGCCAGAAGTGCCGGAAACGAATGAAGTACCAGTGCCTGAAGTGCAACATTCCGCCAATTGACACCGTCGGTGGATTATATTACCATATGAAGTTCAAATGTGGCCAACCGGAATTCTACCACTGCGATCACTGCGACCATCGCACCACGATCAAGCACAACTTGCGTCGTCACATACTGGCCGAGCACACCGATAAAGTGGACGAGGACGGACTCGTCGAGTGTACCAAGTGCGGGGGTAAGTACAAGGGCAGGCCAAATATGCTGAAGCACCGGTTAATGTGCGGCTCGGCGCTGTTTTTCAAGTGTGAGCTTTGCGACGTTAAGACGAGGTACAGACCCAATCTAAAGAATCACTTGAAGACGAAGCACAAGAATTTGAAGACAGAAGAGATCCAGGAAATTCTTGCTAAAGCGACCAAGGAAGAACATTGCAAAGATTTCGTCAAACTCTACTGCTCAAAGTGCGATGTGAACATCAAAAAGCTCACTTCCCAAGACCGAAAGTGTTTTCAATGCGGCACGTCGACACACTTGCAATGCTTGAAGTGCGACAAACGCTACATGACCAATGCCAGTATGTTAATCCACTTGAAAAGAGGGTGCGGACCCAAAAAATACTACAAATGCACGCACTGCGACTACCAAGTCGTTTTGAAGCAGTGTTTGCTCGTTCACATAGAGAGGAGACACGCGACCGTGGCGCCGGAAGATTACCACAGGTGTGGAAAGTGCTCCAAGGGGTTCAGGCATCCGTTGGATCTGAAGAGGCACGAGGAGAATTGCGGCAAAGAAGCCGATCTGCATTGCGAATTTTGCCCTTACAGGGAAATCCAGGAACTCATAATGTCATATTGCTCGAAATGCAAGCGAAAGACGAAAGCCATCCAGGGCAGGAAAAAATGCAGCAGTTGCTCAACCAAATTCACCTACCACTGCGCCAAATGCGACACGACGAATGCCACCCAGTTCCGTCTTCGCAAGCACGTCGTACGCCAACACCTGATCGACGAGCTGAAGAAGCGTCAGGTTTGCCTCAAATGCGGCATGCGATTCGTCCTCTACGACCAGCTGTTCAAGCATCGGGCGTTATGCGGCACGGAGCCGAATCTGCGGTGCGAGCACTGTCCCTTCAAGTCCAAGTACAAGGGCAGCCTGGTCAGCCACATGCGGAAACGTCATGCCGAAATTATGGGGATCGAAGCTCCCCCTAGGCAAATTTGCGTTTGTCGAGTGTGCGGGAAACAGTACGCTGGGGCTCGTAGTTTGAACAGACACGCGTTGTATTGCGGGAAGAAGCCCACGCTTGAGTGTCAGCATTGTAGCTTCAAGTCGTACACGAAGGACCAAATGATAATTCATATGCAGGCGTTTCATCTGCGAATGTTTACCGAGGAGACGCTACTCGAGTGCAAAGTATGCGGCAAAGAGAGTTCCAATTTGTATAGACACGCTACTCACGTGAAGCATTGTGGTGTTGAGTGA
Protein Sequence: MLCTPSVLVWESCNASKKSVADQAKTQCEICHKQMKCQCLKYDIQPIVSAGKFYSNPKFKYGEPEFDHCDYRNKIKINSRRHTLDDHTDKVDEDRLVECDKCGGKFSGRKNMQKHRSLCGLAPFLKCDFCNYESKFKSNLNRHLAAKHRNLKGGENQKEYTLGTTTVLVCESCNATKKSVADRAKTLCQKCRKRMKYQCLKCNIPPIDTVGGLYYHMKFKCGQPEFYHCDHCDHRTTIKHNLRRHILAEHTDKVDEDGLVECTKCGGKYKGRPNMLKHRLMCGSALFFKCELCDVKTRYRPNLKNHLKTKHKNLKTEEIQEILAKATKEEHCKDFVKLYCSKCDVNIKKLTSQDRKCFQCGTSTHLQCLKCDKRYMTNASMLIHLKRGCGPKKYYKCTHCDYQVVLKQCLLVHIERRHATVAPEDYHRCGKCSKGFRHPLDLKRHEENCGKEADLHCEFCPYREIQELIMSYCSKCKRKTKAIQGRKKCSSCSTKFTYHCAKCDTTNATQFRLRKHVVRQHLIDELKKRQVCLKCGMRFVLYDQLFKHRALCGTEPNLRCEHCPFKSKYKGSLVSHMRKRHAEIMGIEAPPRQICVCRVCGKQYAGARSLNRHALYCGKKPTLECQHCSFKSYTKDQMIIHMQAFHLRMFTEETLLECKVCGKESSNLYRHATHVKHCGVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -