Gpul093618.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424576.1:171233304-171249362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.4 6.9e+02 3.4 0.8 2 11 54 63 53 64 0.90 2 20 0.0038 1.1 12.2 4.2 1 21 81 101 81 102 0.95 3 20 0.1 31 7.7 0.9 2 23 111 133 110 133 0.96 4 20 0.027 8 9.5 2.6 3 21 141 159 140 160 0.92 5 20 0.15 43 7.2 3.9 3 23 169 189 168 189 0.98 6 20 0.14 42 7.2 1.2 5 22 243 260 240 260 0.92 7 20 0.0096 2.8 10.9 3.0 2 23 268 290 267 290 0.96 8 20 0.022 6.5 9.8 0.5 3 21 412 430 410 431 0.90 9 20 0.0005 0.15 14.9 1.3 2 23 439 460 438 460 0.97 10 20 7.3 2.1e+03 1.8 0.3 2 11 496 505 495 507 0.89 11 20 0.002 0.59 13.0 1.2 1 21 523 543 523 544 0.96 12 20 0.25 72 6.5 1.2 1 23 552 575 552 575 0.97 13 20 0.0015 0.44 13.4 1.3 2 21 585 604 584 605 0.92 14 20 0.097 29 7.7 1.1 1 23 612 634 612 634 0.96 15 20 0.0095 2.8 10.9 0.5 5 22 692 709 690 709 0.94 16 20 0.00043 0.13 15.2 2.4 2 23 717 739 716 739 0.95 17 20 0.38 1.1e+02 5.9 0.3 2 22 799 819 798 819 0.94 18 20 5.3 1.6e+03 2.3 1.7 1 23 827 850 827 850 0.92 19 20 0.0026 0.77 12.7 2.3 2 21 860 879 859 880 0.92 20 20 0.0001 0.03 17.1 2.8 1 23 887 909 887 909 0.98
Sequence Information
- Coding Sequence
- ATGCACAAGCACTTGAAGGCAGAAGAGATACAGCAGATTTTTGATAGAGCGAAGAAGAAAGAATATAAGAAGCTTGGTAATACGCCCAAGTCTACAGATCACAAACCCGTAATTCGAAACATTTCGAAACCCACAGAATGGAAAAATTTCGTCAAGTTGCACTGCACAAAGTGCGACAAGGGCTTCAAAATAATCACTTGGATAGACCGGAAGTGTCCCCAGTGCCGCGAGACGACACTCTTTCAATGCCTGAAGTGCGACAAGCGTTACACGAACCAGTGCAGTATGCGCACTCACTTGAAAAGTACATGCCAGCCTGAAGAATATTTACAGTGCGCTGACTGCGACTACGGAAGCGTTTTGAAACTTTGTTTGCTCCGTCACATACGGAGAAGGCACATTACGACGGCACCGGAATATTGCGCGAAGTGCGACAAACATTTCAAGCGCCGATTCAACAGGATAAATCACGAGAGACAGTGCGTCAAGAAGGTAGCTTTACTGTGCGAATTTTGCCCCTTCAGAAGCAGACGCAAAGACTGTTTTGAAAAGCATGTGCGGAATCACACGTTGTATTCGGAGAAGGTTAATGCAGATTCTGTAGATAGAACGACTAGCGATGCTGTTGCAATTCCAAATTGTAAGAAAATAGACATCATTCGTAGAAGCAAAGGCGGTAGCGCCAGCAACGACGATAAAtcgatcaaaaataaaatgttccagTGTACGTGCGGTGGTAAGTACAAGGATAAGCACAGTCTGCAGATCCACCAGAGAAGGTGTGGCTTGCAGGCGTATTTGAACTGCAAGATTTGCGGCTACAAGACCAAGTACGGGCATTATCTGAAGGCAcacttaaaaaagaaacacgATGGCTTGAAGAAAGAAGAGTTCCAGAATATTCTTGATACAGCAAGGACGAAAGAAAATAAGATACTTGGTTGGTGTAATGTCGTCAAACAGTACTGTTCAAAGTGCGATGTGACCTTTGAAAAAGTCAATGCAAGAGACCGAAAATGTCTCCAGTGCTGTGCGTCAACTTTTTTGCAATGTATCAGGTGTGACGTGCGTTACGATAGCCACAACAGTATGTACAACCACTTGAGATATCAATGTATGCCCAAAGAGCTCTTCCACTGTGCAGAGTGTGACTACCGAACCTTCATAAAACTCAGATTGATCTGTCACATCGAGAGAGTGCACATGCCTGTGGCACCGGAAGACTACGTGAATTGCGAAAAGTGTGGCAAAGGTTTCAAGTTGCAAAGTTACCGACAGATGCACGAGAAGCGTTGCGGCAAAGAGCTCAATCTGCAGTGCGAATATTGTCCATACAAAACTAACATTAAATACAGTTTGAAGAGACATGTGAAAACTCACTTGCATCATCCAACAAATGCGGCTGCAATTGTTAATGCGAGTTATGTGGATAGAACAATTATCGATGGAGTTGAAGTTTCAGAATGGAAAAATTTCGTCAAGTTGCACTGCACAAAGTGCGACGAGGGCTTCAAAATGATCACTTGGATAGACCGGAAGTGTCCCCAGTGCCGCGAGACGACACTCTTTCAATGCCTGAAGTGCAACAAGCGTTACGTGAACCAGGGCAGTATGCACTCTCATTTACGTGGCAAATGCCAGCCTCAAGAATATTTCCAGTGTGCGGACTGTGAATACGGAAGCGTTTTGAAGGCTTGCCTGCTCCATCACATTGAGAGAATGCACATGGCCACGGCACCGGAAGATTACGTGAAGTGCGACAAGTGCGGCAAAAGTTTTAAGCACCGATTGAACCGGATCAATCACGAGAGACTGTGCGGCAAGAAGACTTCTTATCTGTGCGAATTTTGCCCCTTCAGGGGCTCGCGCAAAGACTATTTTGATAAGCATGTGCAGAGTCACATATTGTACGCGGAGAAGGATAATGCAACGGTTAATGCAGATTCTGTAGATAGAATGACTAGCGATGCTGTTGAAATTCCGGatgatAAGGAAATAGATGTCGTTAGCAGTAGAAAATCTATTACCGCCTGCAACGACGTTAAATCGcccaaaaataaaatgttcgaGTGTACGTGTGGTCGTAAGTACAAGGATAGGCGCAGTCTGCAGATCCATCAAAGAATGTGTGGCTTGCCGGCGTATTTGAACTGCGAGATTTGCGGCTACAAGACCAGGTACCTGCATAATCTGAAGGCACACTTAAAGAAGAAACACGATGGCTTGAAGGCAGAAGACTTCCAGAATATTCTTGATACAGCAAGAACGAAAGAAGATAAGATACTTGGTTGGACACATTTCGTCAAACATTACTGTTCGAGGTGCAAAGTGACCTCTGAAAAAATCAGTTTGAGAGACCGGAAGTGTCCCCATTGCTTCGAGATAACACTCTTGCAATGTCTAAAGTGCAACGTGCGTTACGTGAGCCGCAACGGTATGTACAATCATTTGAGAAGCAAATGCAGGCCCAAGGAGTTCTTCCACTGTGCAGAGTGTGACTACCGAACCTTCATAAAATTCCGCTTGATCTATCACATAGAGAGAGTGCACATGCCTGTGGCGCCGCAAGATTACGTAAAGTGCGACAAGTGCGGTAAGCGTTTCAAGCACCGATGGTACCGGCAGAAGCACGAGAAGCTATGCGGCAAGAATCCCGATTTTCAGTGCGAATATTGCCAGTATAAGAGTAACAGTAAATACAATTTGAAGAGGCATGTGGAGTCTCATGTACAGAATTCAACAAATTTGGATGTAATTGTTAATGCGGGTTCTGTGGATAAAACAACTAGCGATGGCGTTGAAGTCTCAGGTACAAAAGAATGA
- Protein Sequence
- MHKHLKAEEIQQIFDRAKKKEYKKLGNTPKSTDHKPVIRNISKPTEWKNFVKLHCTKCDKGFKIITWIDRKCPQCRETTLFQCLKCDKRYTNQCSMRTHLKSTCQPEEYLQCADCDYGSVLKLCLLRHIRRRHITTAPEYCAKCDKHFKRRFNRINHERQCVKKVALLCEFCPFRSRRKDCFEKHVRNHTLYSEKVNADSVDRTTSDAVAIPNCKKIDIIRRSKGGSASNDDKSIKNKMFQCTCGGKYKDKHSLQIHQRRCGLQAYLNCKICGYKTKYGHYLKAHLKKKHDGLKKEEFQNILDTARTKENKILGWCNVVKQYCSKCDVTFEKVNARDRKCLQCCASTFLQCIRCDVRYDSHNSMYNHLRYQCMPKELFHCAECDYRTFIKLRLICHIERVHMPVAPEDYVNCEKCGKGFKLQSYRQMHEKRCGKELNLQCEYCPYKTNIKYSLKRHVKTHLHHPTNAAAIVNASYVDRTIIDGVEVSEWKNFVKLHCTKCDEGFKMITWIDRKCPQCRETTLFQCLKCNKRYVNQGSMHSHLRGKCQPQEYFQCADCEYGSVLKACLLHHIERMHMATAPEDYVKCDKCGKSFKHRLNRINHERLCGKKTSYLCEFCPFRGSRKDYFDKHVQSHILYAEKDNATVNADSVDRMTSDAVEIPDDKEIDVVSSRKSITACNDVKSPKNKMFECTCGRKYKDRRSLQIHQRMCGLPAYLNCEICGYKTRYLHNLKAHLKKKHDGLKAEDFQNILDTARTKEDKILGWTHFVKHYCSRCKVTSEKISLRDRKCPHCFEITLLQCLKCNVRYVSRNGMYNHLRSKCRPKEFFHCAECDYRTFIKFRLIYHIERVHMPVAPQDYVKCDKCGKRFKHRWYRQKHEKLCGKNPDFQCEYCQYKSNSKYNLKRHVESHVQNSTNLDVIVNAGSVDKTTSDGVEVSGTKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -