Gpul093605.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424576.1:170995233-171012442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0028 0.81 12.6 0.7 2 21 14 33 14 34 0.92 2 15 0.035 10 9.1 1.9 2 23 42 63 41 63 0.96 3 15 0.0035 1 12.3 2.7 2 23 114 136 113 136 0.95 4 15 0.0089 2.6 11.0 0.0 2 21 196 215 195 216 0.92 5 15 1.1 3.3e+02 4.4 4.0 2 23 226 248 225 248 0.94 6 15 0.21 63 6.7 1.6 2 19 278 295 278 298 0.91 7 15 0.0024 0.72 12.8 2.3 2 22 306 326 305 326 0.95 8 15 0.0083 2.5 11.1 0.3 1 21 390 410 390 411 0.95 9 15 0.053 16 8.6 0.0 1 23 419 442 419 442 0.96 10 15 4.3 1.3e+03 2.6 0.9 2 20 452 470 452 472 0.79 11 15 0.0037 1.1 12.2 3.7 1 23 554 577 554 577 0.97 12 15 0.0092 2.7 11.0 2.5 2 22 603 623 602 623 0.94 13 15 0.0055 1.6 11.7 1.4 2 23 632 654 631 654 0.95 14 15 0.33 97 6.1 1.7 2 21 664 683 663 684 0.90 15 15 0.018 5.2 10.1 5.3 2 23 692 713 691 713 0.97
Sequence Information
- Coding Sequence
- ATGACACTGCATGCGACTGTGGCACCGGAAGATTACGAGAAGTGCGGTGTTTGCGGTAAAGCTTTCAAACACCAATATAGCCGTCTAAGCCACGAGAGGTTGTGCAACAATAAACCCGAGATGCAGTGCAAATTTTGCCCGTTTACAAGCAAATGGAAGAACAATTTAAATAAGCACATGCAGGATCACGTAATGGATCTAGAAAATGTGGATGAAACGATTCATGCAGTTTATTCAGACCAAAGTATTGGTACCAAGTGTACCAAGTACAGTGTTGTACGCAGGAGCAAGAGCTCGGTCTGGAACCAGCAGCATTTGTGTGGTGTTGAGTCGTTTTTAATGTGCGAGCTTTGCGATTATAAGACGAAACacagaaaaaatttgaaattacacTTGGAGAGGATGCACGAGAACTTGGAGGCAGGAGGGATCCAGGAGATTCTCGACAGAGCGAAGAAGAAAGAATATAAGCTGATTGATTGGAAACCATTCATCAAATTGTACTGCTCAAAGTGCAACGCAAACTTCAAATTAATCACTTGGAAGGATCGCAAGTGTCCCCAATGCAGCGAGTTAACGCTTCTACAATGCCTGATGTGTGACAAGCGTTACGCGAATCGTCCCGCTCTTTATGCTCACTTGGAAAGAAGATACAAGCCAAAAGTATATAACTTACAGTGTGCAGACTGTGCCTGTCGATTCTTCTCGAAAAGCCAATTGATCTGTCACATAGAGAGAAAACACAAGACCGTGTCGGAAGATTACGAGAAGCGTGTCAAGCGCGGCAAAAGTCATCTGAAGCTATGCGGCGTAGATGCTGAATTTCACGAGAAATGTAGCAAATGCGGTAGAGGTTTTGAATTTCGACATAGCCGGTTGAAACACGAGGAGTCTTGCGACAAGCAGCCCGATATTCAGTGCGAATATTGCcagtataaatgtaaaagtatatacaGTTTGAAGAGACATTTAAATACAATGCCTCTGGAAATTGACGATGTAAAAGTTGATGCAGATTCCACAGATGGAGATGATAGCATTGGCGTTGATATTCCAGGTCCGATAAATTTCATCAAACTGTACTGCTCAAAGTGTAAAGTGAACTTTGACGTTAAAAAGAATAATCTCAATGATCGGAAGTGTCCCCAGTGCTGCGATTTGGCAATCTTCCAATGCCGAAAGTGCGACAAACGTTATGATCAACTCAGCGGTATTCTCAATCACTTGAAAGGCAAATGCAAGCGCAAAAAGTACTTCTACTGCGCAGACTGCGACTACCAAGCTCCTTCCAAAGCTGTTTTGCTCCGTCACATAGAGAGTTTACACATGACTGAGACGCCAAAAGATTACGAGAAATGCGGCAAGTGTGGTAATGATTTCAAGCTCCGAGAAGACCATCAAAGACACGAGAAGATATGTGGCAAAGAACCCGAATTGCAGTGTATACTGGGAAACGAAGTTGCAGCAGTTAATGCGGGTGATGCAGATACAAAAGGAAatggtGAAGAAAACGACATTGTTAGATTTACTAAAATAGGTGTCGCTTGCAATGACGTTGATTTGGACGAGAAAGATTTGAAGTGCACCAAATGTAGCTGTAAATACAAATGCATGCAATCTCTGCAGCAGCATCAAAAAATATGTGGCTTAGTGCAGTTTTTTATGTGCGAGTTTTGCGACCATAAGACGAAATTGAAAGGTAATTTGATGCGACACTTGAAGAAGATGCACAAGAACTTGAAGATAGAAGAGATTCAGCTGATTATTGGTAGGACGAAGGCGAAAGATCTTGAGATGATTGTTTTACAATGCTTAAAGTGCGACAGATGTTACACGAGCACGAGCAGTATGTACACTCACTTGAGAAGCAAATGTGGGCCCAAAGAGTACGTACAGTGTGCAGACTGTCACTACTATAGTTATACCAAGGCACATTTGCGGGCTCACATAGACAGAGTGCACAAAACTTTGGAACCGCAAGATTACGATAAGTGCGGCAAATGCTACAAGGGCTTCAAGCACCGACTGAACCGTCAGTTACACGAGAAGATGTGCGGCAAAGAGCCCCATCTGCAGTGCCAATATTGCCCTTATGTAAGTAAATGGAAACACCATTTCAAGAGACATATGCAGATGCACATACTGCAGCAGAAGAATAAGGATGCAACAAACAATGCAGACTCTGTAGATAGAAAAACTAGCGATGGCGTTGAAATTCCAGaaTACACATCAAAGTCGGGTAAAGAATCCGCTTCAAGTAATCATAAATCAAGATTACAGGAGCTTATCGAGACCCATTGTAAAGAGGCCTATGTTATTTTACACAGGCATGTAAAATTACAGCGGTAA
- Protein Sequence
- MTLHATVAPEDYEKCGVCGKAFKHQYSRLSHERLCNNKPEMQCKFCPFTSKWKNNLNKHMQDHVMDLENVDETIHAVYSDQSIGTKCTKYSVVRRSKSSVWNQQHLCGVESFLMCELCDYKTKHRKNLKLHLERMHENLEAGGIQEILDRAKKKEYKLIDWKPFIKLYCSKCNANFKLITWKDRKCPQCSELTLLQCLMCDKRYANRPALYAHLERRYKPKVYNLQCADCACRFFSKSQLICHIERKHKTVSEDYEKRVKRGKSHLKLCGVDAEFHEKCSKCGRGFEFRHSRLKHEESCDKQPDIQCEYCQYKCKSIYSLKRHLNTMPLEIDDVKVDADSTDGDDSIGVDIPGPINFIKLYCSKCKVNFDVKKNNLNDRKCPQCCDLAIFQCRKCDKRYDQLSGILNHLKGKCKRKKYFYCADCDYQAPSKAVLLRHIESLHMTETPKDYEKCGKCGNDFKLREDHQRHEKICGKEPELQCILGNEVAAVNAGDADTKGNGEENDIVRFTKIGVACNDVDLDEKDLKCTKCSCKYKCMQSLQQHQKICGLVQFFMCEFCDHKTKLKGNLMRHLKKMHKNLKIEEIQLIIGRTKAKDLEMIVLQCLKCDRCYTSTSSMYTHLRSKCGPKEYVQCADCHYYSYTKAHLRAHIDRVHKTLEPQDYDKCGKCYKGFKHRLNRQLHEKMCGKEPHLQCQYCPYVSKWKHHFKRHMQMHILQQKNKDATNNADSVDRKTSDGVEIPEYTSKSGKESASSNHKSRLQELIETHCKEAYVILHRHVKLQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -