Gpul093370.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424576.1:167587252-167608898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4 4.2e+02 4.1 0.1 2 21 2 21 1 22 0.92 2 19 0.65 1.9e+02 5.1 3.1 2 23 30 52 29 52 0.95 3 19 6.2 1.8e+03 2.1 0.7 2 21 112 131 111 132 0.88 4 19 0.011 3.4 10.7 0.7 1 23 140 163 140 163 0.97 5 19 0.00071 0.21 14.5 0.8 2 19 173 190 172 193 0.94 6 19 0.02 6 9.9 2.9 2 23 201 222 200 222 0.97 7 19 0.0026 0.78 12.7 0.0 1 20 280 299 280 300 0.97 8 19 1 3.1e+02 4.5 1.7 1 21 312 332 312 333 0.93 9 19 0.00031 0.091 15.6 7.1 2 23 341 363 340 363 0.96 10 19 0.00055 0.16 14.8 0.7 2 21 380 399 379 400 0.93 11 19 7.2 2.1e+03 1.9 0.3 2 11 459 468 458 470 0.87 12 19 0.065 19 8.3 0.6 2 21 487 506 486 507 0.93 13 19 0.00074 0.22 14.4 1.7 2 21 548 567 547 568 0.93 14 19 0.0011 0.32 13.9 1.5 2 23 576 597 575 597 0.96 15 19 0.0022 0.66 12.9 0.7 1 23 643 666 643 666 0.95 16 19 0.056 16 8.5 0.3 2 21 676 695 675 696 0.89 17 19 0.0011 0.32 13.9 3.0 1 23 703 726 703 726 0.97 18 19 0.0001 0.03 17.1 0.0 2 20 741 759 740 761 0.93 19 19 0.76 2.3e+02 4.9 1.4 3 23 771 792 769 792 0.91
Sequence Information
- Coding Sequence
- ATGGAATGCACCAAATGTGGTGGCGGGTACAGAGACATCCGCATTTTGCAAAGGCACCAGAAACTCTGTGGTATGAAGCCGCTCTTGGAGTGCGACTTTTGCGATTTTAAGGCCAAGTTCAGATGCGCTCTCAAAAAACACTTGGAGAAAACGCACAAGAAATTAAAGGCAATAGAAATCCAGAAGAATATTGATAAAGCGATAGAGAAAAAACATAAGTTGATTGACACCAAAGACTTTGCCAAACTCTACTGCTCAAAGTGCGATATGACCGTGGAAAAAGTCATTTGGAAAGATCGCAATTGTACCGAATGCGGCACGTTGACGCATTTGCAGTGTCTGACATGCGATAGACGCTATTTGAGCCATACCAGTATGTACGCACACTTGAAGAGCAAATGTGGACCCAAAGCGTTCTTCAAGTGCGCCAACTGCGACTACCAAGTTTCTACGAAAACGCGTTTGCTCATCCACATAGAGAGAAGACACATAACCGTGGCACCGGAAGATTACGTGAAATGTCGGAATTGCGGCAAAGGCTTCAAGCATCGATTGAGTTTGCAGAGACACGAGGAGCTGTGTGGCAAAAAGGCCCACATGCAGTGCGAACTTTGCCCCTATAAGAGTAAACACATAACCTATTTCCAGAGGCACATGCAGAATCACATGTTGCATCCGAAGAATAACGATGCGACGGTTAGAAATGGTTCTATCGATAATGGCGTTAAAATTCTAAAGGTGCAAGCACTGATCGAGGCCTATTGCTCAAAGTGCAATAGAAAGACGAATCCCAGCTCCAGCAGAAGTAAATGCGACGAATGCGCGGGCAAGCTGAGCTACCAGTGCGTGGAATGCAACAAGAGATACTCCGCCCCTTGGGAGCTTCGGGAGCACATCGTGTGCGAGCACCTCGTCGACGAGCTGGAGAAGCGCTACAAGTGCTGGAGATGCGCCAAGAGCTTCGTCCTCCACCTCAAACTATACGATCATCAGAAGTTCTGCGGCAAGGAGGCTGATCTGCAGTGCCATTATTGTCCCTTCAAGTCCAAGTACAAGAGTCACCTCACAAGGCACATGAGGCAACGTCACCTCGGAGTAGTGGCGAAGATCCAAAGTCCCGGCGATCGAGAGATGTGCGTTTGCGAGAAGTGTGGAAAGTCGTACAAGGGTGTGGACAATCTGGCCAATCACAAGCGGTCGTTCTGCGGCAAGGAGCCGACCCTAGAGTGCGACCATTGCGCCTTCAAGTCGTGCACGAAGCAAGGGATGGTCAATCACTTTCATCGGGTTCACGTGAGGATTTTATCCGGGAAGGAGCTTAAGTGCAAGATGTGCGCGAAGGAGAGCTCCAATTTCAAAGGTCTTGTCAAACTGTACTGCTCGAAGTGCGACGTCAGCTTTGAGAAGATCAATCGAAAAGACCGAAAATGTCGCCATTGCAGCACGACGCCGCACTTGCAATGCCGGAAATGTGGCAGACGTTACATGGGCACCAGCAGCATGAACCAACACTTGAAAAGCAAATGCGGGCCTAAGAAGTACTTTCGGTGCGCGGAATGCGACCACCAAAGCCTCATGAAGAAAAGTTTATTGTTTCACATACAGGTGAAGCACACGATTGTGGCTCCGGAGGATTACGTGAAGTGCAGAAAGTGCGGCAAAGGATTCAAGCATCGATCGTACATGCAGAGCCACGAGAAGCTGTGCGGCAAAGAGCCCGATTTGCAGTGCGAATACTGCCCCTACAAGAGCAACAAGAAGGCGAATTTCAAGAGGCACGTGCAGAATCACATACTGCATCCGAAGAATGACGTTGAGACTCCAGAAGTACAGAACCTGGCGAAGGCGTACTGCTCAAAatgcgagagagagacggaAGCCATTCTGGGCAAAATAAGATGCACCGAGTGCACCACGAAGCTCACCTACCACTGCGACAAATGTGGTATAAAGTACGAGATGCAGGCCGAGCTTCGCGAGCACATCGTGCGCAAGCACCTTATCGACGAGCTGAAGAAGCGCCAGAGCTGCCCCAAGTGCGGCCAGAGCTTTGTCCTCTACCGGAGTATGTATCAGCACTGGAAGTACTGCAGCGGGGAGCCGAAATTCCGCTGTCCCCACTGTCCTTTCAAGTCCAAGTACAAGGCCAACCTCGGCAAACACATGTACAGGCTTCATCCCGAAGCCACGAGCGCAGAgaatccggctcgaaggaccagcGTCTGTCCCGAGTGCGGCAAGGTGTACAGAGGCCCCGACTCTCTGGCCAGGCACAGGCTGTTGTACTGCGGTAAGAAGCCCAGTATCGCGTGCGCTCACTGCGAGTTCAAGTCGTACACGAAGCAGCAGCTGATAGAACACTTGCACGCGCTGCATCCGCGACTGTTCACCGAGGAGGCGCTGAAGTGCAAAGCGTGCGGCAGACGCCATGTAACAGAGCTTGGGGTCGTGAATTATGGATTCCTCGTGTGCAGGCGTATGACGAGCATTCAAAGACAGGAACGTTCGGGTACTGCAGTTTCTTTTACATCTGCTCTGTCGTTACGTCACTCCCTCTCATTGGCTGAGTACCCACGCATGCGCGAACTGCTGCGCTGTTGTTGGCTAGCTGGTGGGTTATAG
- Protein Sequence
- MECTKCGGGYRDIRILQRHQKLCGMKPLLECDFCDFKAKFRCALKKHLEKTHKKLKAIEIQKNIDKAIEKKHKLIDTKDFAKLYCSKCDMTVEKVIWKDRNCTECGTLTHLQCLTCDRRYLSHTSMYAHLKSKCGPKAFFKCANCDYQVSTKTRLLIHIERRHITVAPEDYVKCRNCGKGFKHRLSLQRHEELCGKKAHMQCELCPYKSKHITYFQRHMQNHMLHPKNNDATVRNGSIDNGVKILKVQALIEAYCSKCNRKTNPSSSRSKCDECAGKLSYQCVECNKRYSAPWELREHIVCEHLVDELEKRYKCWRCAKSFVLHLKLYDHQKFCGKEADLQCHYCPFKSKYKSHLTRHMRQRHLGVVAKIQSPGDREMCVCEKCGKSYKGVDNLANHKRSFCGKEPTLECDHCAFKSCTKQGMVNHFHRVHVRILSGKELKCKMCAKESSNFKGLVKLYCSKCDVSFEKINRKDRKCRHCSTTPHLQCRKCGRRYMGTSSMNQHLKSKCGPKKYFRCAECDHQSLMKKSLLFHIQVKHTIVAPEDYVKCRKCGKGFKHRSYMQSHEKLCGKEPDLQCEYCPYKSNKKANFKRHVQNHILHPKNDVETPEVQNLAKAYCSKCERETEAILGKIRCTECTTKLTYHCDKCGIKYEMQAELREHIVRKHLIDELKKRQSCPKCGQSFVLYRSMYQHWKYCSGEPKFRCPHCPFKSKYKANLGKHMYRLHPEATSAENPARRTSVCPECGKVYRGPDSLARHRLLYCGKKPSIACAHCEFKSYTKQQLIEHLHALHPRLFTEEALKCKACGRRHVTELGVVNYGFLVCRRMTSIQRQERSGTAVSFTSALSLRHSLSLAEYPRMRELLRCCWLAGGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -