Basic Information

Insect: Gastracanthus pulcherrimus
Gene Symbol: -
Assembly: GCA_949152435.1
Location: CASCKD010000080.1:27610-36380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0013 0.39 13.6 1.4 2 21 12 31 11 32 0.93

2 13 0.14 42 7.2 4.2 2 23 40 61 39 61 0.96

3 13 0.0012 0.36 13.7 0.9 2 21 111 130 111 131 0.96

4 13 0.029 8.5 9.4 2.5 3 23 140 161 138 161 0.95

5 13 0.095 28 7.8 0.3 2 21 221 240 220 241 0.93

6 13 0.0051 1.5 11.8 1.5 2 21 282 301 281 302 0.93

7 13 0.1 30 7.7 1.9 2 23 310 331 309 331 0.97

8 13 0.011 3.2 10.7 0.5 2 21 403 422 403 423 0.96

9 13 0.025 7.4 9.6 1.9 2 23 431 453 430 453 0.96

10 13 0.077 23 8.1 0.4 1 21 512 532 512 533 0.92

11 13 0.0007 0.21 14.5 0.7 1 23 541 564 541 564 0.94

12 13 0.001 0.31 13.9 2.7 2 22 574 594 573 594 0.94

13 13 0.0036 1.1 12.2 1.7 2 23 602 624 601 624 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0013	0.39	13.6	1.4	2	21	12	31	11	32	0.93
2	13	0.14	42	7.2	4.2	2	23	40	61	39	61	0.96
3	13	0.0012	0.36	13.7	0.9	2	21	111	130	111	131	0.96
4	13	0.029	8.5	9.4	2.5	3	23	140	161	138	161	0.95
5	13	0.095	28	7.8	0.3	2	21	221	240	220	241	0.93
6	13	0.0051	1.5	11.8	1.5	2	21	282	301	281	302	0.93
7	13	0.1	30	7.7	1.9	2	23	310	331	309	331	0.97
8	13	0.011	3.2	10.7	0.5	2	21	403	422	403	423	0.96
9	13	0.025	7.4	9.6	1.9	2	23	431	453	430	453	0.96
10	13	0.077	23	8.1	0.4	1	21	512	532	512	533	0.92
11	13	0.0007	0.21	14.5	0.7	1	23	541	564	541	564	0.94
12	13	0.001	0.31	13.9	2.7	2	22	574	594	573	594	0.94
13	13	0.0036	1.1	12.2	1.7	2	23	602	624	601	624	0.96

Sequence Information

Coding Sequence: ATGCACATGATTGTGGCACTGGAAGATTACCAGAAGTGCGGCAAATGCGGTAAACGTTTCAAGCTCCGAGCACACGTGCAGAGGCACGAGAAACTTTGCGGTAAAGAGCCCAATTTACAGTGCGAATTTTGTCCATTCAGGGGCAAACATAAACGCAGCTTTAAAAAGCACGTGCAGAATCACATACTGCATCCAGCAAATCAGAATGTAAAGGTTAATGCCGAATGTACAGATCCAACTGGCAATGTTGATGTAGAAATAAACGTTAGTCTTAGTAAAGCTGATGCGACAATATCAAATACCATTAAACTGGATGAAAATGGTTTGGCGAAGTGTACTAAGTGCGGAGCTACGTATAAGAACAGTGGCACGATGTGGCACCACCAGAGACTTTGTGGCTTGGCACCATTTTTGGATTGCGGCTTTTGCGACTTTAAAACCAAGTTTAGAAATAGTCTGAAGAGACACTTACAGAAAAGTCACAAGGTCCTGCAGCCGGAGGAGATCCAGAAGATTAGTAATGCAGCGAAACAGAAAGAACATGAGATGTTAGGTTCGAGAACTTTCGTGAAACTGTACTGTCCAAGGTGcaaaataaactttgaaaagAGCAATATAACTGACCTAAAGTGCCTCCAGTGCTGCAAGTTAGGAGTCTTACAATGTCTTAAGTGCGACAGAAGTTATGCTTCTTTCAACAGCATGTACGTTCACTTGAAAAACAAATGCGGGCCCAACAAGTACTTCCACTGCGCAGACTGTCACTTCCGAAATGGTCTGAAAACCAACTTGATGTATCACATTCAAAGGGTACACATGACTGTGACACCGGAACGTTACAGTAAGTGCGCCAAGTGCGGTACAGGTTTCAAGCACCGATCTAACCGGCTGAGACACGAGAAGCTGTGCCGCTATGAGCCTTATATGCAGTGTGGATTTTGCTCTTTTAGGAGTAAAAacgtaacaaattttaacagaCACGTGCAGAGTCACATACTGCATACGATGAATAAGGATGCAACGGTTGAAGCAGGTTCTAGGGCTGAAACCCATGGCGATGTCGCTGAAATTCTAGaTGATGAGGTATCGAATAGCGATAACAATGTGATACGAAAAGATAATATTTCATCCGGAAATCTAGAAAAGAGCAATAGTCAATTGCCGCCTGAGGCAAATATCGAAACGAGAAATACAACTAAACAACCTAAGTGTGAAAAGTGTGGCAGCAGGTACGGGAGCAAGTACACTATGTGGAGACACCAGAGATTATGTGGCTTGGCAACGTTTTTGAACTGTGAGCTTTGCGACTATAAAACAAAGTATAGGTTTAGACTGAAAGAACACTTGAAGACGATGCACAAGTTTTTGAAGGCAGACATGATCCAGAATATTCTTGATAGAACGAATATGAAAGAAGATAAGACGATCAGTTACAAAGATTTTGTCAAACTGTACTGCACAAAGTGCGAGGTGACCTTTGAAGGAGACAATTTCAAAGACGGCAAGTGTCCCCATTGTCTTGAGATAGCACGCTTCCAATGCCTGAAGTGTGACAGACGTTACATCGATCGCAACCGCATGGACGCTCATGTGAGAAGAAAATGCGGACCCAAAATATACTTCCAGTGTGCAGACTGTGACTACCGAAGCATCAGAAAAGCCCATTTGAGCTCTCACATAGAGGCAAGGCATACGACTGTGGCAGCAGAAGCCAACGTGAAGTGCGGCAATTGCGACAGAAGTTTCAAGCACCGGACGAACCGACAGAGGCACGAGAGGCGCTGCCGCAAAATGTCTGATCTGCAGTGCGAATTTTGTCCCTCCAGAAGCAAGCGCCAAGGATTTCTGAAAAAACATATGATGCGGAATCACGAGCTGCACCTGGAAAGTGAGGATGAATCGGTTAACACAGATTCCGTTGATAGAACGACTAGTGATGACGTTCAAATTCTAAGTTTCTACTGTACGGTGATTGCGACAGACGCGTGCATCAGAATCGCAGCAGACTTGCAGCCGACGAGTGCAACTAAGGTGGATGAAATAATCCAggcgcgagtgcagcagaattgcaccagAATTGAGTCCAACGATTGCGTCAGCCACGTGCGTCAGAATTGCAGCAGACCTGCAGCCGACGAGTGCGACTAA
Protein Sequence: MHMIVALEDYQKCGKCGKRFKLRAHVQRHEKLCGKEPNLQCEFCPFRGKHKRSFKKHVQNHILHPANQNVKVNAECTDPTGNVDVEINVSLSKADATISNTIKLDENGLAKCTKCGATYKNSGTMWHHQRLCGLAPFLDCGFCDFKTKFRNSLKRHLQKSHKVLQPEEIQKISNAAKQKEHEMLGSRTFVKLYCPRCKINFEKSNITDLKCLQCCKLGVLQCLKCDRSYASFNSMYVHLKNKCGPNKYFHCADCHFRNGLKTNLMYHIQRVHMTVTPERYSKCAKCGTGFKHRSNRLRHEKLCRYEPYMQCGFCSFRSKNVTNFNRHVQSHILHTMNKDATVEAGSRAETHGDVAEILDDEVSNSDNNVIRKDNISSGNLEKSNSQLPPEANIETRNTTKQPKCEKCGSRYGSKYTMWRHQRLCGLATFLNCELCDYKTKYRFRLKEHLKTMHKFLKADMIQNILDRTNMKEDKTISYKDFVKLYCTKCEVTFEGDNFKDGKCPHCLEIARFQCLKCDRRYIDRNRMDAHVRRKCGPKIYFQCADCDYRSIRKAHLSSHIEARHTTVAAEANVKCGNCDRSFKHRTNRQRHERRCRKMSDLQCEFCPSRSKRQGFLKKHMMRNHELHLESEDESVNTDSVDRTTSDDVQILSFYCTVIATDACIRIAADLQPTSATKVDEIIQARVQQNCTRIESNDCVSHVRQNCSRPAADECD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00739422;
90% Identity: iTF_00739422;
80% Identity: iTF_00739422;