Gpul093620.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424576.1:171276686-171300949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0071 2.1 11.3 0.8 2 21 64 83 63 84 0.92 2 12 9.6e-05 0.028 17.2 0.8 2 19 148 165 147 168 0.94 3 12 0.012 3.7 10.6 1.8 2 23 176 197 175 197 0.96 4 12 0.00019 0.057 16.2 0.7 1 21 226 246 226 247 0.96 5 12 2.2 6.5e+02 3.5 9.3 2 23 255 277 254 277 0.96 6 12 0.0024 0.72 12.8 0.9 2 21 329 348 328 349 0.93 7 12 0.0015 0.45 13.4 1.7 2 23 357 379 356 379 0.97 8 12 0.72 2.1e+02 5.0 2.5 2 22 431 451 430 451 0.92 9 12 0.0089 2.6 11.0 4.4 2 23 459 481 458 481 0.95 10 12 0.00063 0.18 14.6 1.0 1 23 518 541 518 541 0.98 11 12 0.0016 0.48 13.3 0.2 2 19 551 568 550 570 0.96 12 12 0.012 3.6 10.6 3.2 2 21 579 598 578 599 0.94
Sequence Information
- Coding Sequence
- ATGGAGTATAAATTGGTGGAAGTTAAAGTTGAAAATGATTTGATCAAATCGAAAAAGAAGCGCATTAAAGAAGAAGTTACGACTTTGGAATTTCCCGATTACACTGAAGGTGAAGATATAGACGTTGTTAGTATTAGGAAAGCTGCTACTACCCGCAATGACGTTGAATTGGACGAAAATTATTTGTCCAAGTGCACCAAGTGCGGTAAAAGGTTGAAGGACAAGTACAGTCTACCGAAACATGAGAGACTATGTGGCTTGGCGCCATTTTTAATGTGCAAGTTCTGCGACTATAAGGCCAAAGAGAGCTGCAAACTAAAATTTCACTTAATGAGACTGCACAAGGACTTAAAGGCAGAAGAGATCCAGAAGATTGttgatacagcaaagatgaaaGAACATAAGAGAAGGCATGTCACTGTAGCACGAGAAGATTACAGTAAGTGCAGCAAGTGCGATAGAGTTTTTAAGTACCAATCGTCCCTCAAATTGCACGAGAGTCTGTGCGGCAAGAAGGCCCATCTTCAGTGCGAATTTTGCCCCTTTAGAGGAAAGCGAAAATACTCTTTCAAGAGACACGTGTTGAATCATATACTGCAACTAAAAGATGCGGGTGCAACTATTAGTGACATCAAAATTGCAGATAACATCAAAACGAAATCTACAACTGAACAATATCAGTGTACCAAGTGCGATGGCACATACAAAAGCAGACGCAATCTGCAGGGCCACCAGAGAATTTGTGGCTTGGCGCCGTACGTAAAGTGCGAATTTTGCCACCACAAGACAAGGTTCAGATGTAATTTGAAGAATCACTTGATAAGGAGACACAAGGACTTATCGGCAGAGCAGATGCAGAAAACTCTTGATGCAGCAAGggtgaaagaacataaaatgtTTGaaaGTGAAGATATAGACGTTGTCAGTATTAGTCAAGCCGTTACCACCCACAATGACGTTGAATTGGACAAGAATAGTTTTTTGAAGTGCACCAAGTGCGGTGACACTTTCAAGCGCAGAATTAGTCTGCGAAACCACAACAGACTGTGTGGCTTCGCGTCGTTTTTGAAATGCGAATTTTGCGACTTGAAAACTATGTACAGAGAAAATTTGAAGCGACACTTGCAGACGACGCATAAGAAGTTGAAGGCAATTGAGATTCAGGAGATTCTTGATAGAGCGAAGACGAATCAACAGAAGATGCTTGaTGACGGGGAAATAAACGTTGTTAATATTAATGAAGCTCTTACCGTTCGTGATGACGTTAAACAAAACCATGATGGTGCGGTCAAGTGTACCAAGTGCGACTGTACGTTCCAGGCCAAACGCATACTGCGGAGGCACGAGAGAACATGTGGTTTGGCGCCATTTTTGAATTGTGAGTCCTGCAACTATAAGACAAAGCAAAGATGTAATCTGAAGAGACACTTGCAGAGGGTGCACAAGCATTTGAAGACAGAAGAGATCAAGAGGATTATTGAGACAGCAATGATAAAAGAACGTGAGATGTTAGTCTCTCACTTGAGAGGCAAATGCCAGCCACCAGCGTGCTTCCAGTGCTCATTTTGTGACTACCAAAGCTCTTCGAAACCTCTATTGGCCCGTCACATACAGAGAAGACACGTGCCTGTGGCGCCGGAGGATTACGTGAAGTGCGGTAAGTGCGCTAAGGTTTTCAAGAAGCAAGTGTACCTGCAGAGGCACGAGGTACTCTGCGGCAAGGAGCTGGATTTACAGTGCGAATATTGCCACTTCAGAAGCAAACGCAATTACACTTTCCAAAAGCACGTAAGGAATTATATACTACGGCTAGCAGATGAGGATGCAACGATTGATGAAAATTCTACTGTTGGAACAACTAAAGGTGACGTTGATATTCCAGAAGAGGAAAGGATCCACCACCGAAAATCGATAGGAAAGGGGAGGAGGGGTGGCTCGAAAGAGGGTCAAAAGGCCGTCGCCTTCTCTTTGGCTGTTGAAGAGCCAATCAAGGGTACGCTTCTCCGAGTCACTAATGACAGCGCACGCCAACTCTTAGTACTACACCGCAAGAGTATCGGAGAAGCTTCGACCGGAGGGCAGCCGCCTCTCGATTCACCCTTCATCAGTCACTCTCTCGTTAGCAGTCCAACGAGCAACAACTATTTCAGCTTAGCTCCGCAAAGTCAGCAAACTTCAAAATTCAGACGCTATCTACAAACGCCAGAGGCCAACGTCAGCATCATTCTTCAGGTCCTACCGACGCCAAACTTGTTTAGCCGAGGCCAAATCCGTTCTTCAAGTTCTACTAGTATAGCTCCGTTCGTCGGGTTTATACAGCCTAGTCTCGGATCTTAA
- Protein Sequence
- MEYKLVEVKVENDLIKSKKKRIKEEVTTLEFPDYTEGEDIDVVSIRKAATTRNDVELDENYLSKCTKCGKRLKDKYSLPKHERLCGLAPFLMCKFCDYKAKESCKLKFHLMRLHKDLKAEEIQKIVDTAKMKEHKRRHVTVAREDYSKCSKCDRVFKYQSSLKLHESLCGKKAHLQCEFCPFRGKRKYSFKRHVLNHILQLKDAGATISDIKIADNIKTKSTTEQYQCTKCDGTYKSRRNLQGHQRICGLAPYVKCEFCHHKTRFRCNLKNHLIRRHKDLSAEQMQKTLDAARVKEHKMFESEDIDVVSISQAVTTHNDVELDKNSFLKCTKCGDTFKRRISLRNHNRLCGFASFLKCEFCDLKTMYRENLKRHLQTTHKKLKAIEIQEILDRAKTNQQKMLDDGEINVVNINEALTVRDDVKQNHDGAVKCTKCDCTFQAKRILRRHERTCGLAPFLNCESCNYKTKQRCNLKRHLQRVHKHLKTEEIKRIIETAMIKEREMLVSHLRGKCQPPACFQCSFCDYQSSSKPLLARHIQRRHVPVAPEDYVKCGKCAKVFKKQVYLQRHEVLCGKELDLQCEYCHFRSKRNYTFQKHVRNYILRLADEDATIDENSTVGTTKGDVDIPEEERIHHRKSIGKGRRGGSKEGQKAVAFSLAVEEPIKGTLLRVTNDSARQLLVLHRKSIGEASTGGQPPLDSPFISHSLVSSPTSNNYFSLAPQSQQTSKFRRYLQTPEANVSIILQVLPTPNLFSRGQIRSSSSTSIAPFVGFIQPSLGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -