Gpul093609.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424576.1:171050231-171079108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0093 2.7 11.0 0.6 1 22 48 69 48 69 0.95 2 18 0.025 7.3 9.6 1.9 1 23 77 100 77 100 0.95 3 18 0.66 1.9e+02 5.1 0.4 5 19 112 126 111 127 0.93 4 18 4.1 1.2e+03 2.6 0.4 2 10 162 170 161 173 0.89 5 18 2.3 6.7e+02 3.4 0.8 2 16 190 204 189 210 0.82 6 18 0.00016 0.046 16.5 2.3 1 23 218 241 218 241 0.96 7 18 0.0016 0.48 13.3 0.4 2 20 249 267 249 269 0.92 8 18 0.0025 0.74 12.7 4.5 2 23 277 299 276 299 0.93 9 18 0.00019 0.055 16.3 0.8 1 21 336 356 336 357 0.97 10 18 0.0076 2.2 11.2 1.2 2 23 365 387 364 387 0.91 11 18 0.96 2.8e+02 4.6 1.0 5 23 411 430 408 430 0.95 12 18 7.8 2.3e+03 1.7 0.0 7 19 444 456 438 459 0.84 13 18 0.0035 1 12.3 0.4 1 21 497 517 497 518 0.96 14 18 0.028 8.2 9.5 1.1 2 23 526 548 525 548 0.95 15 18 0.0014 0.4 13.6 0.3 2 21 619 638 618 639 0.95 16 18 0.0031 0.91 12.5 3.1 2 23 648 670 647 670 0.96 17 18 0.0025 0.73 12.8 0.9 2 22 680 700 679 700 0.94 18 18 0.0063 1.8 11.5 3.1 2 23 708 729 707 729 0.97
Sequence Information
- Coding Sequence
- ATGCCCACGAGTGGCGAAGATTTGCCAGTCCGAAGTAATGCTAACGCGGGTCCGGGCTGGCAGTCTTTTCCTTCTGAGAGGAGTGCGAAGGGGAAATGGGGGTTTAACCGGACGTGTCCACAGTGCCGCGAGTTAGCAGTCTATCAATGCCTAAAGTGCGACAAACGCTATGACCAACTCATCGGTATGTACAAACACTTGAGAAGCAAATGTCAGCCCAAAGAGTACTTCCACTGCGCGGACTGTGACTTCCGAGGCTTTAACAAGAGAAGTTTGCGTAATCACATAGAGAGATGGCACAGAACTGTGGCACCAGAAGATTACGAAATAGAAAACTGTGACAAAGGTTTCAGGCACCGAGAGAACCGTCAAAGCCACGACAGGCTGAGCGACACAGAGCGCGATTTACTGCTAAACGAAGTTGCAAAGGTTGATGCGGATTATGcagatacaaaaaaaaATTGGAAAAATTTCGCCAAGCTGTACTGCTCAAAGTGCAAGAAGAACTTCGATTTAGTTACATGGAAAGATCAAAAGTGCCCCCAATGCTGCGAGTTAACACTCCTACAATGCCTTAACTGCGACAGGCGTTACGAGAATCCTGACAAAATGTACTGTCACGTGCGAAACAAATGTGCGCTCAAACCAAACTTCCACTGTGCGGACTGTGACTATCGATTCTTTTCGAGAAGCCAATTGCTCTGGCACATACTGAGAAGACACAAGATCACGGAGAAATATGAGAAATGCGTCAAGTGCGGCAAAGGTTTCGAACACCGACGTAACCTGTTAATGCACGAGATGGTTTGCGTTAAGCAGCCCCATCTTCAGTGCGAATATTGTCCgtttaaatgtaaaagtaaataCGATTTGAAGAGACATTTCAAGGCATTTCATTCGGAAATCGACGAGGTTACGGTTGATGCAGATTCTGCAGATGGAGCAACGAGCAATGATGTTGACATTCCAGGCCGCAACGACATTAAATTAAACGAAAATGGGTCTTTCACGTGTACCAAGTGCGATGTTTCGTTGAAGAACAGACGAAGTCTGCTAAAACACATGAGACTGTGTGGCTTGAAGCCGTTTTTGATGTGCGAGTTTTGCGACTATAAAACGAAAGCCAATCATAATCTGAAGCGGCACTTAGAAGCGATACACAAGAACTTAAAGACAGGAGAGATCGAGTACAATATAGATATAACGAAAGCGAAAGGACAGAATATGATAGACTGTGACTATCGATTCTTTTCGAAAAACCAATTGCTCTGTCACATACAGAGAAGACACGTGATCTTCGCCGAAGATTACAAGAAATGCGACGAGTCCGGCAAAGGTTCCAAGGACCAGTACAACTTGCAGAGTCACGGGAATCTGTGCAACGTAGAGGTTGATTATTGCGAGAAATGTGgCAGTGAAGAAAACGACGTTGTTTCATTTACTAGAGCAGATACCGCTCGCAATGACGTTGAGTTGGACGAGAAAGATTTTGAATGTACCAAATGCGGTGGTAAGTACAAAGTCATAAGATCTCTGCAGAAGCACCAGAGAATATGTGGTTTATCGTCGTTTTTGAAATGCGAGTCTTGCGACTACCAGACAAGATATATTCGTAGTCTGAAGAGGCACTTACAAAATATACACAAGATTTTGAAGGTAGGAGAGTTTCAGCAGATTATTGGTAGAGCACAGGCGAAAGAACATGAGATGATTGGTAGAGCGAAGGCGATAGAACACGAGATGATTGGTTTAAGAAATTTCGTCAAACTGTACTGCTCAAATTGTGAAGTTAACTTCGAAAATTGCCAATTGAGAGACCGGAAGTGCCCCAATTGCTGCGAGCTAACACTTCTACAATGCTTAAAGTGCGACAGACGTTATACGAACCAGAGCGATATGTACGATCACTTGAGAGGCAAATGTGGACCCAAAGAGTACTTACAGTGTGCAGACTGTCACTACTATAGTTATACCAAGGCACATTTGCGGGCTCACATAAAGAGAATGCACAAAACTTTGGAACCGCCAGACTACGATAAGTGCGGGAAATGCGGCAAAGGCTTCAAGCACCAAGTGACCCGTCAGATACACGAGAGGACGTGTGGCAAAAGGCCCAATCTTCAGTGCGAATATTGCCCTTATAAAGGAAAAATGAAATGCAATTTCGAGAGACACATGCAGAATCACATACTGCAACTAGCGAATGCGGATGCAGCGGTTAATACAGATTCTAGAGATAGAACCACTAGCGATGGCGTTGAAGTTCCAGGCTGTCGTCCCGACAATCCAAATCTTGGAAAATGGACCTCTTCTCTAAGCGGGCAGATCCTTGTCTTGGAGTCCAAGTAA
- Protein Sequence
- MPTSGEDLPVRSNANAGPGWQSFPSERSAKGKWGFNRTCPQCRELAVYQCLKCDKRYDQLIGMYKHLRSKCQPKEYFHCADCDFRGFNKRSLRNHIERWHRTVAPEDYEIENCDKGFRHRENRQSHDRLSDTERDLLLNEVAKVDADYADTKKNWKNFAKLYCSKCKKNFDLVTWKDQKCPQCCELTLLQCLNCDRRYENPDKMYCHVRNKCALKPNFHCADCDYRFFSRSQLLWHILRRHKITEKYEKCVKCGKGFEHRRNLLMHEMVCVKQPHLQCEYCPFKCKSKYDLKRHFKAFHSEIDEVTVDADSADGATSNDVDIPGRNDIKLNENGSFTCTKCDVSLKNRRSLLKHMRLCGLKPFLMCEFCDYKTKANHNLKRHLEAIHKNLKTGEIEYNIDITKAKGQNMIDCDYRFFSKNQLLCHIQRRHVIFAEDYKKCDESGKGSKDQYNLQSHGNLCNVEVDYCEKCGSEENDVVSFTRADTARNDVELDEKDFECTKCGGKYKVIRSLQKHQRICGLSSFLKCESCDYQTRYIRSLKRHLQNIHKILKVGEFQQIIGRAQAKEHEMIGRAKAIEHEMIGLRNFVKLYCSNCEVNFENCQLRDRKCPNCCELTLLQCLKCDRRYTNQSDMYDHLRGKCGPKEYLQCADCHYYSYTKAHLRAHIKRMHKTLEPPDYDKCGKCGKGFKHQVTRQIHERTCGKRPNLQCEYCPYKGKMKCNFERHMQNHILQLANADAAVNTDSRDRTTSDGVEVPGCRPDNPNLGKWTSSLSGQILVLESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -