Gpul040641.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424574.1:13205574-13211796[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0063 1.9 11.5 0.4 1 23 199 222 199 222 0.95 2 15 2.4e-06 0.00071 22.2 1.2 1 23 300 323 300 323 0.98 3 15 0.15 43 7.2 2.5 1 23 336 358 336 358 0.95 4 15 0.00096 0.28 14.1 0.8 3 23 384 404 382 404 0.96 5 15 0.01 3 10.8 0.1 1 23 410 432 410 432 0.94 6 15 0.00024 0.072 15.9 0.2 1 23 438 461 438 461 0.95 7 15 0.011 3.4 10.7 6.2 3 23 619 640 617 640 0.97 8 15 0.00012 0.035 16.9 3.8 1 23 646 668 646 668 0.97 9 15 0.22 64 6.6 6.6 1 23 677 700 677 700 0.94 10 15 0.0012 0.36 13.7 3.1 1 23 706 728 706 728 0.96 11 15 9.3e-05 0.027 17.3 1.2 1 23 733 756 733 756 0.96 12 15 0.01 3 10.8 2.2 1 23 762 784 762 784 0.98 13 15 0.0018 0.54 13.2 4.4 1 23 788 811 788 811 0.96 14 15 0.0064 1.9 11.5 0.3 3 23 819 839 818 839 0.98 15 15 4.1e-05 0.012 18.4 1.5 1 23 845 868 845 868 0.97
Sequence Information
- Coding Sequence
- ATGCAACATCCGGAGGCGGATTCGACGTCGTCGGCGCCGGAGAAGGATAAACAGCAGCGCCGCTGTAGCAGCCGCGAGGAGGAGCCGGAGCAAAAGAAGGAGGACGGGGTCCTTGGTAACGAGAGCTGCGACGAAGACGATGCGACGACAATAGCTGTCTCTTCGGCCTCCAGCTCGCCCGTCATCATCCGGATTTTGGATCTTAGCTCCAGAAAAGAATATCTGTTCATTCATTCCAGGGAACCATTGGACTCCATAGATCTCACCATAGGCGACGACAAGGACAAAGAATCACCTGACGAACCATCGACTAAGAGTAAGTCTCCTACAAAGAAAGCAAAAACCCAAAATCCTCGAAATCCATCATCCACCACCACTAGGAAGTATTTCCTGCGCGAGTTGCCCGATAAAACCACCACCACAACCTCTGACTTAGACGAGGAAGATTTGATCACCAAGCTCTGCGTCTACAAGAAACTTCCCAACGGCAGCTACTTCTGTGAGCTCTGCAGCCTGAAGAGCGTCACCACCACCTACAACGAGAAGCCCCAAATAGTGCGTCACCTGCTCCGAGCTCACACTCAATGCCAAACGTACGAGTGCTCGAGCTGCCCACTGACCTTCAACAAAGCATCCTGGTTCGAGGATCACAAAGACAAGGACCATCCAGATCTTAAGAAACAGAATAGCAAGTTCTTCAAGTGCATCAAGTGCAGGCACCAGAGCAAGGAGAAGGATCTGCTGAGGTTGCATGTGCTCAGGAGACACGCTGCAGAGTACAGATATGTTTGTAAATGCTGCGCCAAGTGTTTCAAGACTTGGAAGTCGAAGCACGAGCATGAAAAGGAGGTGGAGAAGACTCAAAAGAAAGTGGTGCAGAGCAAGCCCAGGCCCAAGTATGTGTGTGACAAGTGTAGCAAGGTTTTTAACACTAAGACAGAGCTTGTTAAACATCTGAAGAAGATTCATGAGCAAGACTTCTATAAAAATGGCGTCAAGATCCTCCACAGCTGCAAGCGCTGTCCCAAGTTCTTCCTCACTCGCAAGTCCCTGGGCGCTCACCTGTCCCTCCACAAGGCCAAGTCCACGGGCTTGCCGGCCAGGAGCCGCGTCCCCGCGCGCGCGGAGAACGACGCAACTGGCTACGGCTGCTCGGTGTGCGGCAAGCTCCTCTCGTCCCGTGACCACCTGAAGAAGCACGGCATGGTCCACAGCGGGGAGCGACCCCACGCCTGTCCCGAGTGCGGCCAGGCCTTCGCCCTGCTGACGACCATGAGGATACACGCGCTCTCCCACAGCGGCATCAAGCCCTACAGGTGCGAGGTGTGCGACGTCGGCTACTCCCAGAGGTCGGCACTGATGACGCACTGGAAGGCCAAGCACAAGGGACTGCCGATACCGGGGCCCGTGGAGATAAGACAGTACTTCGATCGAGAGGGCAGAGTCGTGATTCCCTGTGAGCGAGACATCGCGCGCTGGTACAAGAAACAGAACATCGTGACGCGGATAAGAGTGCGCAAGGCCTCGGAGCTGACCGAGGCCAATTCCGCGAAGATCGAGCAGAGCCAGGGCAAGTCAGCCAACAGCCGAGTCATGCCCAAGAAGTGCGTCAAGCCGACCTCCAAGAGGAAACGCTCGGTGCCCTCGAGGATCCCCAAGGACGACTCCGAGAGCGAGAGCGACGCCAAGGACCTCTCGCCCGAGCCTCCCCCAAGAGTCGCGAAGATCGAGTCGAGCGCTCCTCAAGGCGAGAGACCTCGAGGGCGAGAGTCTCCCCCCCTGCCCGTGATGGAGATAAAAGTCGAGCCACCCCAGCCGATCCTCCACACGAAGCTCAAGGGCGGCGGCTTCGGCTGCAAAGTCTGCCACCAGAAGTTCAGCCATCGCTACAAGGTCAAGCAGCACATCAAGATGAAGCACGCGCCCAGGGAGGTCTTCAAGTGCGCCGAGTGCTCCAAGACCTTCAAGTCCAAGTACCAGTTCAAGGTCCACTCGAACCAGCACCTGGAGAACTGCAACGACTATCTGTTCTGCTGCGACAAGTGCGACTACCGCGCCAAGTCCAAGCACTACCTCAAGACCCACGAGATACGCAAACACACGAACGAGTACAACTTCGAGTGCGACCACTGCGGCAAACGCTTCAAAATGAAGATGGACCTGAAGTTCCACCTGGGGACCCACGGGGCCTCCCAGCACATGTGCGACGCCTGTGGCCGCATGTACACCAGTCAGGACTCCCTCTACAAGCACAGGCGCGTCGTCCACTTGAACGACTACAAGTTCCAGTGCGAGATCTGCCACCAGAAGCTCCTCACCCAGGAGAACTTCAACAGCCACATGGAGTCGCACAAGAATCTCCACAGCTGCGACGAGTGCGATCTCAAGTTCACGAAGAAGTACTACGTCACCAGGCACAAGAAGCGAGTCCACAAGGTCGAGAAGACGAATCTCTGTCCGGTCTGTGGCAAGGCCTTCGTCTGCATGGCCACCCTGAGAGTTCACTATTTGACTCACGCCAAGGTCAAGCCGTACATGTGCAACGTTTGCGGGTTCAGCTTCACCCAGAGGTCCTCGATGATGCTGCACTGGAAGAGGAAGCACCCGGACGCGGAGGATCCGCCGCCCCCGGTGATACTGACCAATTTCTTCGATGCCATACAGTCCGAGGTGAACAAGCTGGtcgagacgacgacgacggagTATCCCGTGGGGACGGCCGAGTCCTACCAGTCGGCGACGCCCGCCGACGGCATTGTCAACGTCAACGCCGGCACGGCTGTTTAG
- Protein Sequence
- MQHPEADSTSSAPEKDKQQRRCSSREEEPEQKKEDGVLGNESCDEDDATTIAVSSASSSPVIIRILDLSSRKEYLFIHSREPLDSIDLTIGDDKDKESPDEPSTKSKSPTKKAKTQNPRNPSSTTTRKYFLRELPDKTTTTTSDLDEEDLITKLCVYKKLPNGSYFCELCSLKSVTTTYNEKPQIVRHLLRAHTQCQTYECSSCPLTFNKASWFEDHKDKDHPDLKKQNSKFFKCIKCRHQSKEKDLLRLHVLRRHAAEYRYVCKCCAKCFKTWKSKHEHEKEVEKTQKKVVQSKPRPKYVCDKCSKVFNTKTELVKHLKKIHEQDFYKNGVKILHSCKRCPKFFLTRKSLGAHLSLHKAKSTGLPARSRVPARAENDATGYGCSVCGKLLSSRDHLKKHGMVHSGERPHACPECGQAFALLTTMRIHALSHSGIKPYRCEVCDVGYSQRSALMTHWKAKHKGLPIPGPVEIRQYFDREGRVVIPCERDIARWYKKQNIVTRIRVRKASELTEANSAKIEQSQGKSANSRVMPKKCVKPTSKRKRSVPSRIPKDDSESESDAKDLSPEPPPRVAKIESSAPQGERPRGRESPPLPVMEIKVEPPQPILHTKLKGGGFGCKVCHQKFSHRYKVKQHIKMKHAPREVFKCAECSKTFKSKYQFKVHSNQHLENCNDYLFCCDKCDYRAKSKHYLKTHEIRKHTNEYNFECDHCGKRFKMKMDLKFHLGTHGASQHMCDACGRMYTSQDSLYKHRRVVHLNDYKFQCEICHQKLLTQENFNSHMESHKNLHSCDECDLKFTKKYYVTRHKKRVHKVEKTNLCPVCGKAFVCMATLRVHYLTHAKVKPYMCNVCGFSFTQRSSMMLHWKRKHPDAEDPPPPVILTNFFDAIQSEVNKLVETTTTEYPVGTAESYQSATPADGIVNVNAGTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -