Gpul056638.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424574.1:166576987-166588479[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 4.6 10.2 0.5 6 21 12 27 8 28 0.90 2 14 1.6 4.7e+02 3.9 0.0 2 20 34 52 33 53 0.93 3 14 0.28 82 6.3 0.2 1 12 235 246 235 255 0.89 4 14 0.17 50 7.0 0.7 1 20 384 403 384 405 0.94 5 14 0.00013 0.037 16.8 0.5 2 23 410 431 410 431 0.97 6 14 0.044 13 8.8 2.4 1 23 442 464 442 464 0.95 7 14 0.24 70 6.5 0.6 1 23 483 504 483 504 0.89 8 14 0.0011 0.33 13.8 0.1 2 23 510 531 509 531 0.95 9 14 7.9e-05 0.023 17.5 4.8 1 23 614 636 614 636 0.99 10 14 9.6e-06 0.0028 20.3 5.0 1 23 642 664 642 664 0.98 11 14 0.00021 0.061 16.1 4.6 1 23 670 692 670 692 0.98 12 14 2.4e-06 0.0007 22.2 0.8 1 23 698 720 698 720 0.98 13 14 0.00015 0.045 16.6 0.2 1 23 724 746 724 746 0.99 14 14 0.00031 0.093 15.6 0.1 1 23 754 776 754 776 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCGATGAGTCTGCTGTGTCCCATGTGCTGCGGTGAGACTTTCAGCAACTCCGAGTCTCTCAAGTACCACTTGCTCAGTATAACGGACAATTTGTACTGTCCCGGATGCTCGCTGAGGACTTACTCCATGGCTGCGTTGATCCAGCACCTGGACTGTTGCGGCAAGGAAACGGAGATGAGCGAGCAGATAAAGGAGACCGACGTGATTGTTAACGACATAGGTAACGGGGACAACGACAAGGAAGGACCTGATATTTTAATGGATGAGAGTGACGATATTAACGATAGCTTTTTGGCTACTGTGAACGAAGAAGGAATAATGATTGTTGGCGAGGGTAGGACTATCCAAGTGGATGAAAATGGTGATATTCAAGTTCTGGAAAAAATGAATTCATTAAGCCATGAAAAATCTGCACCtctaacaaataataatacagaATGTAGCGCAACAGaaggagaaaataaaaattctgagTCTTCTAATAACTTACAAAGTGAAACTACAGTTGTCAATTCAGAAAGAAAAGATTGTATGTCAAGCATGCCTGACACTTCTGAATTATTGACTGAACATGATGGTGAATTAATGAGCATAGAGGGAAATCCTTCTATTGAATTTGAAGATTGCGAActgcttaaaattaaaaaagaatctgACCAAACAACAGAAAAAGTGCAAGATGAAGCCGATGTAATGTACAGTTGTAGTACATGTGGTATGAGTTTTAACTCAGTGTTAGAGCACATAAAAGAATACCACGATGGACAAGAAGTCGTATTAGAAATGGCTGAGCAGCAAATTGATCAAATACAAGCAAACACAGGCGAAACAATCGCCGAATCTCCTGCCGTTACAAATACACCCACAGAAACAACAAATAGCGTTGTTTCCGCAAATAGAGCTGCGCCAGCTACCACAGTTCCAGCCAAACAAAGACAATCTATGAATACGCTGAGAACCGAGGAATGTATCGACAGCGACGGTAGATTGTACACTCGAAAGGTTGTGCAAATCGAGAGGTTCTGGGACAGAACTCCGGTCACTCTATCGGCGACGAAAGCTCCAATGATAGAAAAGTTTTTCTCCAACGTCGAGGGTGTCAAGGTTAGAGACAAGAGCGTGACGGTCGCGCCTACGAAGATGTACCGCTGCAACCAGTGCCTGGAGCAGTTCGCCAAGTTGGGTGACTTTCGCGTGCACGCCTGTCTGCAGGGCAGCAATCGTTGCGATCATTGCGAGCAGAGCTTCGCCACGGCCAAGGCGCTGCAGGTTCACGCCAAGGTCCACGAGTCGAGCGACTTCCCGTCCCAGAAGATCTTTTTGTGCACGGTCTGTGGCACCGAGTTCCTCACGCACAAGAGCCTCAGGCTGCACTCGAGAATGCACGCGCCGGTCAGGGCAAGACACGTCGAGGCGCCCGAGGGCACGGACGAGGAGACCTTCGATTGCCACGAGTGCGGCACGACCCTCTCGGAGTCCTACCGCAGCGCGCACATGGCCCTGCACGCCGGCGACACGATCACCTGTTCGATCTGCAATCGGAAGTTCGACTCTGCCGAGAGCCTGTCGATGCACGCCGCCGTCCACACCGAGCCCACCATGAACTCCACCTCGGCGAACGCCGCCGCAGCCGCGGTTGCCGCGGccacggcggcggcggctgcggcggcgaACGACCTCGCGTCTCAGGACCCGAGCGAACCGATCTTCGTCAGTACCGGCACGACGACGAGCACCGGCTCCTACCTGACGACGAACACCGCGATGACCACGGCCGCGGCCATCAGCGCACTGGGCGCCCTCGACTCGGCCGAGGTCCAGAGCCAAAAGCCCTACCAGTGCCAGCACTGCGGCAGGAGGTTCACCAGGCCACACGAGAAGGTCAAGCACGAGAGGATACACACGGGGGAGAAGCCGCACTCGTGTGAGGTCTGCGGCAAGAAGTTCCGCGTCTCCTACTGCCTGACCCTCCACATGCGCACCCACACGGGTGTCCGTCCCTACGAGTGCCAGCACTGCGGCAAGCGCTTCAAGGCCTCCTCAGTCTACAACCACCACCTCCTGACCCACGGCGACGAGCGGGCCTACACCTGTCCCTACTGTCCGAAGACCTTCAAGACCCGGGTCCAGCTTGCCGGCCACAAGAACAGCCACACCAAGCCCTTTCGCTGCACCGAGTGCTCCAGGCCCTTCGCCTCCCTCTACGCGGCGCGCGCCCACATCCAGACCCACAAGAAGGACAACAATCTCAAGTTCAGCTGCAACATATGCGGCGCCTCGTACGGGAGGGCCTTCGCTCTCAAGGACCACGTTAAGCAGCACGAGAAGGAGGAGGACGCGCTCGTGCCCCCGGAGGCCGCCAGGGAGGAGGAGGTGCACGAGGTCGAGAGCTTCCTCATGCCAGAGGTGGAGGAGGTCGAGGAGGACGAGTTGATCGTCCCGTCGCCACCGCCCACGCATTGCGAGGATCCGATACAGATTGAATTGGTGGAGGAGGTCTTCCCGAGAAGTTCAAAGCCGGTCGCGCGCTACTCGGCTCGAGAGCAGGGCAAACAGATCGACCGGCCGGCCGCTAATGCATCATCTGCCGCGGAGATTGTGCGCGAGGCCCTATAG
- Protein Sequence
- MGSMSLLCPMCCGETFSNSESLKYHLLSITDNLYCPGCSLRTYSMAALIQHLDCCGKETEMSEQIKETDVIVNDIGNGDNDKEGPDILMDESDDINDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKMNSLSHEKSAPLTNNNTECSATEGENKNSESSNNLQSETTVVNSERKDCMSSMPDTSELLTEHDGELMSIEGNPSIEFEDCELLKIKKESDQTTEKVQDEADVMYSCSTCGMSFNSVLEHIKEYHDGQEVVLEMAEQQIDQIQANTGETIAESPAVTNTPTETTNSVVSANRAAPATTVPAKQRQSMNTLRTEECIDSDGRLYTRKVVQIERFWDRTPVTLSATKAPMIEKFFSNVEGVKVRDKSVTVAPTKMYRCNQCLEQFAKLGDFRVHACLQGSNRCDHCEQSFATAKALQVHAKVHESSDFPSQKIFLCTVCGTEFLTHKSLRLHSRMHAPVRARHVEAPEGTDEETFDCHECGTTLSESYRSAHMALHAGDTITCSICNRKFDSAESLSMHAAVHTEPTMNSTSANAAAAAVAAATAAAAAAANDLASQDPSEPIFVSTGTTTSTGSYLTTNTAMTTAAAISALGALDSAEVQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHVKQHEKEEDALVPPEAAREEEVHEVESFLMPEVEEVEEDELIVPSPPPTHCEDPIQIELVEEVFPRSSKPVARYSAREQGKQIDRPAANASSAAEIVREAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -