Gpul078116.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424576.1:14206958-14212204[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.9e-07 0.00012 24.7 0.7 1 23 324 346 324 346 0.98 2 14 2.5e-06 0.00073 22.2 2.9 1 23 352 375 352 375 0.96 3 14 0.00066 0.2 14.6 0.4 1 23 381 403 381 403 0.97 4 14 1.5e-06 0.00043 22.9 1.8 1 23 409 431 409 431 0.98 5 14 0.00013 0.037 16.8 2.3 1 23 437 459 437 459 0.97 6 14 0.00015 0.044 16.6 1.1 1 23 465 487 465 487 0.98 7 14 0.012 3.4 10.7 5.9 1 23 493 516 493 516 0.96 8 14 0.00018 0.053 16.3 0.9 1 23 639 661 639 661 0.99 9 14 3.6e-05 0.011 18.6 0.6 2 23 668 690 667 690 0.93 10 14 0.01 3.1 10.8 0.3 1 23 696 718 696 718 0.99 11 14 1.5e-05 0.0043 19.8 2.6 1 23 724 746 724 746 0.96 12 14 0.00031 0.09 15.6 0.7 1 23 752 774 752 774 0.97 13 14 0.00016 0.046 16.5 0.9 3 23 782 802 780 802 0.98 14 14 1.4e-05 0.0042 19.8 2.1 1 23 808 831 808 831 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAGATTCCAAACGATGTAGAGGTTGTAATTAAGACTGTTAGCAATAAGGGAATGATAATTCAAGACACAAAAGAGATCATTGAAAAGGGCGAGGAAATAAAAACAACAGAGTACTACTTGAACGTTGAAGACCACGGCGAAGAAGATGGAATAGAAGGTGCACAGTTTGTGACTGTGGATAATGACTGCGATGGACAGTTTGTAGCCGTTGAAGTTTCAGATTCGGGTCAAATAATTTTACCCGATAAAGATGTGATACTCTGGAACGAGATATGTCGGATTTGTGCAAATGGAAGTGATAAGGAATTTATTTCCATATTCGATGGTGAAGGATTAGAGCACGATCTGGGGAATAAAATTCACACATATTTACCATTAAGGgTTTCTGAGAATGATACTCTGCCTCTCCAAGTATGTTATAATTGTGCAGCAACATTGATAGCATGGCATGAGATATTTAAAGGCTGTCTAGATGCACAGCAACGTCTTGTGGACTtgcaaagtaaattaaatttaaaggaCCAGtaTTACAATGATCCATCAGTGgaagaagaaaatattgaaacagTATTAGAAGTTGAAACTATTAACAACGAAGAATCACAGATTCAACCTAAAGATGAGGATACAGTGGAGATGGTGCAGATTATTGAATCAAACagGTCCGCAAGCATCCAGCCGTCGAAAACAGATATCCCAGACATTCAGATAATAAAACCGAAGGCATCCATCGAAAAACCCACCGCGACGAGCGAAAGAGCCGACGAAAGCTCGGACCGCTGGATGACGGTGGCGGATTTCGCCCGATCACCACCAGATCCTCTAGACTGTACCTCCCAAAGTCTCGACGTcgacagtagcagcagcagcagcattgaCTCCTCGAAGAAACCGAATCCGATACCGAAGCTCAAAACCAAAGCCAAAGGCCGCAAAGCGAAAAAGAATTCGACAATCGAGTCGCACGTGTGCCCCGAGTGCGGCAAGATATTCGGCTTCAAGGACTCGCTGACGCGCCACCTGCGCATCCACAACGACGAGCGGCCCTTCACCTGTCACGTCTGCGGCAAGCAGTTCCGCGACTCGGGCGGCCTGTGTCGCCACCTGCGCGACGTCCACGCTCGCCTCAAGAACTTCACCTGCGACACGTGCGGCAGGAGTTTCGCCTCGAAGGCGACGAGGGACGACCACGAGCGCATACACACGGGCGAGCGGCCCTACGTCTGCGACACCTGTGGCAAGAGCTTCAAGACGAAGGCTTCCTTGTACACGCACTCGAAGACCCATACCGATGCCTTTCCACATCCTTGTGCGTACTGCGAGAGGAGGTTCAGGAGGAGGCAGGAGCTGCTGTCCCACCTGTCCACGCACACGGGGGAGAAGAAGTTCGAGTGCGACGTGTGCTCGAGGAGGTTCAGAGTGAAACTCGAGCTCAGGAGGCACACGCTGAGTCACTCGGAGGAGAAGCCTTTTGCCTGTGACATTTGTGACTTTAGATGCAAGCAGAGGAGGTATCTGAATAATCACGTGAGGCACAAGCACAGCTTGATCGAGAAGAAGGAGGAGACGGATGTATGCGTGAGACTCGAAGACGGCGGGATCATCGCCATCCtcacgacgacgaggacgacaaAAACGTGCTGCCCCTCTCCAGCACCTGTAGTCGTATCGCCATCGgcatcaccaccaccaccaccagcaccaccggcaccaccaccaccgccaccctcgtcgtcgtcgtctcgcAAGCGTAAAAGGCGCTCGAACGATCCACCGAGCGTCTCGCACAAGTCCTCCAAATCCAAATCCTCCCCGACGCCGGCGTCGGCCGACCCCGGCTGCAGCCGCAGCGTGCAGCGTCGCCAGGAGGTCCTGCGCGCCAAGGTCAGCGTGGACGGGGCCACATACTACAAGTGTCGCGACTGTCCCAAGCTCCTCTCCACGCCGTACAACTACTTCGCCCACAAGCGCGTGCACACCCACGAGCGGCCCTGCACCTGCGGCATATGCGGCAAGAGCTTCACCGCTGGCTCCTCCCTGAATCGGCACGTGCGCGACGTCCACGACAAGATCAAGGACTACGAGTGCGACTACTGCGAGCGCAGGCTCGCTTCCAAAGTCGCCCGGGACGAGCACCAGCGCACGCACACGGACGAGAGGCCCCACGTCTGCGACACCTGCGGGAAGAGCTTCAGACAGAGGGCCTCCCTGTCGGTGCACAAGAGGTTCCACTCCAAGATCTTCCTGTTCAATTGCAAGCTGTGCGAGAGGGGCTTTCCCAGGAAGCAGGACATGGAGAGGCACGAGCTCACGCACACCGATCAGAAGCCTTACGGCTGCAAGGTGTGCAGCAAGACTTTCAGGAGCTCGGCCTCGGCCATCAGACACAGGCAGACGCACGAGCCGGAGAACAATCACATGTGCGACGTTTGCGGGGAGAGCTTTAGTCAGGAGAGGTATCTGAAGAATCACAAGAGGAAGGTGCACAAGGACGACTGA
- Protein Sequence
- MEEIPNDVEVVIKTVSNKGMIIQDTKEIIEKGEEIKTTEYYLNVEDHGEEDGIEGAQFVTVDNDCDGQFVAVEVSDSGQIILPDKDVILWNEICRICANGSDKEFISIFDGEGLEHDLGNKIHTYLPLRVSENDTLPLQVCYNCAATLIAWHEIFKGCLDAQQRLVDLQSKLNLKDQYYNDPSVEEENIETVLEVETINNEESQIQPKDEDTVEMVQIIESNRSASIQPSKTDIPDIQIIKPKASIEKPTATSERADESSDRWMTVADFARSPPDPLDCTSQSLDVDSSSSSSIDSSKKPNPIPKLKTKAKGRKAKKNSTIESHVCPECGKIFGFKDSLTRHLRIHNDERPFTCHVCGKQFRDSGGLCRHLRDVHARLKNFTCDTCGRSFASKATRDDHERIHTGERPYVCDTCGKSFKTKASLYTHSKTHTDAFPHPCAYCERRFRRRQELLSHLSTHTGEKKFECDVCSRRFRVKLELRRHTLSHSEEKPFACDICDFRCKQRRYLNNHVRHKHSLIEKKEETDVCVRLEDGGIIAILTTTRTTKTCCPSPAPVVVSPSASPPPPPAPPAPPPPPPSSSSSRKRKRRSNDPPSVSHKSSKSKSSPTPASADPGCSRSVQRRQEVLRAKVSVDGATYYKCRDCPKLLSTPYNYFAHKRVHTHERPCTCGICGKSFTAGSSLNRHVRDVHDKIKDYECDYCERRLASKVARDEHQRTHTDERPHVCDTCGKSFRQRASLSVHKRFHSKIFLFNCKLCERGFPRKQDMERHELTHTDQKPYGCKVCSKTFRSSASAIRHRQTHEPENNHMCDVCGESFSQERYLKNHKRKVHKDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -