Gpul006172.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- -
- Assembly
- GCA_949152435.1
- Location
- OX424572.1:50531769-50539868[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-10 2e-06 29.8 0.0 8 38 56 86 54 89 0.91 2 2 3.5 1.1e+04 -1.4 0.1 28 37 261 271 260 273 0.83
Sequence Information
- Coding Sequence
- atggccAAGACACGCTCAAATAATAAGAGGAGCAATAACCGTTCAAAGTCAAACGCTAAGGAGGAAAGTGTACAAGAGAAGGAAAACAATGTCAACAGTGAGACTAAGGTCAAAGAAAAGGAGACTATTGAACCAGCAGTGAGCAAGAAAAAAGTTGTGGAAACaGCTCTTGACGCAGTGAATAAAGGACAAACCATCAGAGAAGCTGCGAATGAATATGGTGTTCCCAAGAGTACATTGTACGATAAGATGAAGAATTATTCTCCCATTAGCTGTACTAAAGGTCCGCCAACTGTATTAAatgAGACTGCTTTCATGCTGGTGCCGAAGGACAACACAGTTATTACTGAAAAGGGTGCAAGATCCGTCTATCAGATTGTAGGATCTAGTGAAAAAGCAAATCTCACAGTTCTTTTTACGGCTGCTGCTTCTGGTGAAATGCCTCCACCGATGATATTCATAGACAACATCCATGTTATGCAAACAGATGATTTTGATTACCACCAAGAAATCTGCTTTCAGGACAATAATTCATTTAGTCAACTTATGGAAGAAACCGAAGTAAATTCACCAACTGGAGAAATAGACTTCTACGATGAATCTGaaGAAATAACTCAATCGCCAGAAGATGAAATTACTCACTCGGTAGCAGATGGAATTATTTGCTCGACAGTAGGTCTAGTCACTCATTTGACAGTTAATAAAGTCACTCCATCGACAGTGGATAAATCATCAGTTAGTGAAGAAAGTAATGTTCCTGTATGGCACAATGATGAAAGTGTTCCTAATACTAGTTTAGAAACTTCATACGTATACAAAGATGAAGTTCTTGATTTATCCGATTACAGTCGTCATTCAAAAATCGATTTGTCTGATATTAACATGGATGTCAGTACGAATGCTAGTATAGATGTTAGTATTGATGAAGCAAGTAACAGTTCCATAGATGTTCATAAGCAATCTGATCAACTTCAATCTGAGAATACTTTTGCAAAGTCCTCGCAGAAATCTTCAATGTCGCCCAAGTTTCCCGAATCACGCAATGCCTCAAGGATTTCTGACTGCGAAAGCGATGGTAGCGGTGCTGGTAGTACCTCGAGAATAAATTCCGAATATGGAATATTGTCCAGCTCAGATGGAGACGTAGAAGAAGTCGGTGAGTATATCGGCGAAGCCGGTAACACGCACGAGGAATCGGCATTCAACGGCGACTACATCGCCGATTCCAATGTTTGA
- Protein Sequence
- MAKTRSNNKRSNNRSKSNAKEESVQEKENNVNSETKVKEKETIEPAVSKKKVVETALDAVNKGQTIREAANEYGVPKSTLYDKMKNYSPISCTKGPPTVLNETAFMLVPKDNTVITEKGARSVYQIVGSSEKANLTVLFTAAASGEMPPPMIFIDNIHVMQTDDFDYHQEICFQDNNSFSQLMEETEVNSPTGEIDFYDESEEITQSPEDEITHSVADGIICSTVGLVTHLTVNKVTPSTVDKSSVSEESNVPVWHNDESVPNTSLETSYVYKDEVLDLSDYSRHSKIDLSDINMDVSTNASIDVSIDEASNSSIDVHKQSDQLQSENTFAKSSQKSSMSPKFPESRNASRISDCESDGSGAGSTSRINSEYGILSSSDGDVEEVGEYIGEAGNTHEESAFNGDYIADSNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -