Gpul059199.1
Basic Information
- Insect
- Gastracanthus pulcherrimus
- Gene Symbol
- bab1
- Assembly
- GCA_949152435.1
- Location
- OX424575.1:4251946-4255174[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9e-05 0.28 13.3 0.1 2 38 214 250 213 256 0.85 2 4 5.6e-12 1.8e-08 36.4 0.0 3 38 265 299 263 302 0.94 3 4 0.0029 8.8 8.5 0.0 7 34 321 347 317 353 0.84 4 4 2.4e-11 7.5e-08 34.3 0.0 4 39 378 413 375 417 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAGCCGGCCGTGGCCGCTGTTGTCgagcagcagctgcagcagaCGGAGGTCGACACCTCCTACTGCTTCAAGTGGAGCAACTACCAGAGTCACCTGTCCGAGGTCGTGCGCCAGCTGCTCGAGGAGGAATGCATGGTCGACGTGACCCTCTACGCCGCGGGCGAGAGGATACAGGCGCATCGGCTCGTGCTCTGCGCCTGCAGCACGCTCTTCCAAgaTATACTCAGCCAGGTTAATGAAGAACATGCAACAATAATTCTGAGTGATATATCTCCACAAGATGTTAGATCAATTGTGGAGTTCAGTTATAATGGAGAAGTTAGAATTCCTGTCGAgaacatcaataatttattgGATGCTGCACATTCTCTGAAAATATGCGGGTTGATGGAGatcgAAGGTCTCGATGAGTCTGAAATAACTCAAGATAAAGATATAAACAGTGAAGAAACATACATTCTTAATGAATTAAGTCAGGCAGATGAAGACGAAAtagaaacttttgaaaaaacaattactGACAAAAGTAATgaatacaaaagaataaattcaaCAAATGACGAGGAAGATGATTCAGATTTTCCAAGTCTTAAACGAAAGCGCAGAAAGAGTGTTTGTAAAAGAGAGTACAGCGATGAGATGTTGGCAGCTGCTATTACCGATATACGTGCAGGGCGTTCATTACTAGAATCAGCTGCAAAAAATCACATTCCCAGATCCACCCTTTACATGCGTGCAAAAACTTTAGGCCTAACTTTGAACCCTTCTCGAAGTGAATATACAATCGAAGACATGAGACAAGCTATACAGGCAGTAGTAGCTGGATCTAGTTTGCAACAAGCTGCAGATTGTTTTGGAATTCCAAAAACAGTTTTGTGGCGAAGGATTCAAAAAGAAGGCTGTCAACCACCTAGACATGTGACAAGACAAAATTATGGATCTGAGAAAAGAGAAGCTGCTGTAAAGGCATTAGCAAGAGGAGAGGCTCTTACAAAAGTTGCAAATGAATACAAAATACCAAAAACAACATTGTTTCGAGACAAAGCACGCTTAGTCGATCAAGGAAAATTGCCAACATCATTTTGGAAAAAGCGGAAATCCGATGGAGAAGACCTAAAACAATCTCGTCTGCAGGAAGCAGTAACTGCATGCAAAGATGGTAAGATGTCACAAGCAACAGCTTCTGTAACTTATCAAATTCCTAAAACTACTATATGGAGGCGACTCCAAAAAGATGTTAAGAAGCCGAGTTTAGTGACACCAGGTAGGAAACAACTAAGGGGATATTCGTCTTCCAATCGACATAGTGTAGAAATTGCCAAAGCAGAAATTGCCAAAGAGGAACTCAATGAAACTGATTTCGAGGCATATTGTCCAGAGGATACAGATATAGATATAACATATATTGACGAAAGTAATATGTCAGATGATCCAGTTATAATTCTTGCTACTGGAAGCGTAGATGaactaaatttacaaaacaGTAGATCCTTAGTAGTTGTACACGAAggctctaatgaaaattttatatcatGCGGATTAGAGTTAGACGAGAACTCTACATTTGTTTCGAAAAGTTAA
- Protein Sequence
- MSEPAVAAVVEQQLQQTEVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAAGERIQAHRLVLCACSTLFQDILSQVNEEHATIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEITQDKDINSEETYILNELSQADEDEIETFEKTITDKSNEYKRINSTNDEEDDSDFPSLKRKRRKSVCKREYSDEMLAAAITDIRAGRSLLESAAKNHIPRSTLYMRAKTLGLTLNPSRSEYTIEDMRQAIQAVVAGSSLQQAADCFGIPKTVLWRRIQKEGCQPPRHVTRQNYGSEKREAAVKALARGEALTKVANEYKIPKTTLFRDKARLVDQGKLPTSFWKKRKSDGEDLKQSRLQEAVTACKDGKMSQATASVTYQIPKTTIWRRLQKDVKKPSLVTPGRKQLRGYSSSNRHSVEIAKAEIAKEELNETDFEAYCPEDTDIDITYIDESNMSDDPVIILATGSVDELNLQNSRSLVVVHEGSNENFISCGLELDENSTFVSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00739221;
- 90% Identity
- iTF_00739221;
- 80% Identity
- iTF_00739221;