Gjac014060.1
Basic Information
- Insect
- Gasteruption jaculator
- Gene Symbol
- -
- Assembly
- GCA_949825005.1
- Location
- OX463766.1:16964918-16968813[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.057 6.5 8.0 4.8 1 23 397 419 397 419 0.98 2 10 1.9 2.1e+02 3.3 3.7 1 21 425 445 425 448 0.95 3 10 0.00011 0.012 16.6 0.9 2 19 455 472 454 476 0.89 4 10 0.00011 0.013 16.5 2.8 1 23 482 504 482 504 0.98 5 10 0.0016 0.18 12.9 0.1 3 23 512 533 510 533 0.90 6 10 0.44 50 5.2 1.2 1 23 540 563 540 563 0.97 7 10 3.1e-06 0.00036 21.4 0.6 1 23 567 589 567 589 0.97 8 10 0.00072 0.083 14.0 0.4 1 23 595 617 595 617 0.98 9 10 1.6e-05 0.0018 19.2 3.0 1 23 623 645 623 645 0.97 10 10 1.7e-06 0.00019 22.3 2.1 1 23 650 672 650 672 0.96
Sequence Information
- Coding Sequence
- ATGGAgctggaggaggaagagggcCAGGTCTGTCGCCTTTGCGGCCAGTGCGAGAACATCTTCATAGACGTTTTCGGCGAGGAAGGCACCAAGCGCCTCCTGGGGGTCAAGATCCAGACCAAGGTCAACATTCTTATCGATGAGAGAGACCCTCTGCCCAAAACCATCTGCGTGCAGTGTCTGGGGAAACTTGAATTCGTATGCGACTTCCAAGAGGAGTGTCTTCGCACCCAGCAGGTGTTACACGATCGCTACAACCTGCCACCTCTGGGAGACCTCGAGAAAAGCATTGAAGGTACAGGTGTGCCAGCGACCGGGTCGGAAACCGCAGCAGCGGCGACAACCCCTGGTGGACCGACGTCGACAACGGCGACAGCAACAGCAGTATCGACCTCGAGCCCCGGTCCCACCGAAACCATCGAGGAGCAACCGGAGTACCGAGTGCTGCGAAACAGCAAATCTTCCAGCCAAAGGGTCACTCGGAGCTCCCGAGCTCGCCAGGAACCCTCCGTGCCCACTCCTCCGCCTCCTTCGTCGAGTCTCCTCCCGAACACCGACGGCGACTTGCCGATCTTCCGGGTGACGGAGAACGGAGAGCGCCTGGACCCCATAATCGACGGcacgtcgtcgtcctcgtcgtcctctTCCTCGTCCTCCTCGTCCGCCGGGTCCCCGGAGTTCTCCTGCTCCTCGTCGGAGCGCGACCTGAACGCCAACGTGGTGCAGATCCCCACCCTGGCGCTGAACAAGCTCCTGACGATGGTCTCGAACTCGCCGAACATCGACATCTCCGTGAAGGAGTCGACGAACCGCAGCGGCAACGTCGAGGACATCAGCTTCACGGTGGAGCTCTGCAAGAAGGAGCCGGCGACGGAGGAGGGCGCCGGTGCCACGGGGGCGATCGTCCGGGCCAGGGTCTTCCCCGATCAGGGCTCCTGCCTCGTGGACACCACCATCGTCGGGCTGCTGGAGAAGCAGAGCAGCGTCCTGGTGAACAGCATCATCAACAGCATCGCCAGCGGCGGCAAGGAGGGCGCCGCCGAGGGCGTGGCCAAGTTCGACGAGCTCGAGTTCCTGGAGGAGAGGCTGAGCGGCACGCAGAACCCGGAGGAGCTGTTCCGGGTGGACGGCGAGGAGATACGCGTGGACGAGAACGTGGAGCCGGCGATGCTGGACCAGCAGTCGGGTTACGCCTGCAAATTGTGCAAGAAGTTCTACGAGCGCAAGGACAAGTGCACGGTGCACGTGAAGACCCACCTGGGGATCAAGCAGTACGCCTGCACCCTGTGCACGGCGCGGTTCGTGTGCAAGTCCGACGTGATGAAGCACATCCGGTGCTCGCACACCAACCCGAGGCCCATCCAGTGCCCCAAGTGCCCGAAGCGCTTCCGCTCCAAGTTCTACCTGACCGAGCACGACAACGTGCACAAGGGGGTGAGGCCCTACCGGTGCGGCGACTGCGGGCAGAGCTACCACCACAAGGTCTCGCTGCAGATCCACGCGAAGAGCCACCTGCCGCCGCAGAACCTGGCCTGCGAGTACTGCGGCAAGGTCTTCCCCTTCCGAACGCGGCTGCTGAGCCACGTGGGGAGCGTGCACATGAAGAACCGGCGAAACTTCCGCTGCCGCTTCTGCTACAACCTCTACTCGAGCCTGGCGGTGCTGAACGAGCACATCAAGACCCGGCACGCCACCACCTACACCTGTGATATCTGCGGCAAGACCTTCAAGGTCGCCTCCAAGTACAAGGCCCACGTGTCCCAGCACACCAACCCCAAGCCCTACGTCTGCAACGTTTGCAACAACCGTTACGCCTCCAAGGCCTTCCTCAACGAGCACCTGCTGAAGCATGAGGGCCTGAGGAAGCACAAGTGCCAGAAGTGCGGCGCCAGCTTCGCCCAGGCCAGTCACCTGGCGGCCCACCGGCACGTGCACGGGGAGAAGACCCACGCCTGCCCCGAGTGCGGACGCATGTTCAATCGGCGCGACAACATGAAGGTGCACCGGAAGCGGCACTTCGAGCAGCAGGCGAAGAAGGGGCTCTCGGCGGCCGCGGGTGGACCCGAGCCGGGCAAGGATCTCGTCGCCAAGGACGACCCCGAGACGAAGAGTCTCCTAGGACTCCAGGCTTCCAATGAGAATGAGAAATAG
- Protein Sequence
- MELEEEEGQVCRLCGQCENIFIDVFGEEGTKRLLGVKIQTKVNILIDERDPLPKTICVQCLGKLEFVCDFQEECLRTQQVLHDRYNLPPLGDLEKSIEGTGVPATGSETAAAATTPGGPTSTTATATAVSTSSPGPTETIEEQPEYRVLRNSKSSSQRVTRSSRARQEPSVPTPPPPSSSLLPNTDGDLPIFRVTENGERLDPIIDGTSSSSSSSSSSSSSAGSPEFSCSSSERDLNANVVQIPTLALNKLLTMVSNSPNIDISVKESTNRSGNVEDISFTVELCKKEPATEEGAGATGAIVRARVFPDQGSCLVDTTIVGLLEKQSSVLVNSIINSIASGGKEGAAEGVAKFDELEFLEERLSGTQNPEELFRVDGEEIRVDENVEPAMLDQQSGYACKLCKKFYERKDKCTVHVKTHLGIKQYACTLCTARFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFRSKFYLTEHDNVHKGVRPYRCGDCGQSYHHKVSLQIHAKSHLPPQNLACEYCGKVFPFRTRLLSHVGSVHMKNRRNFRCRFCYNLYSSLAVLNEHIKTRHATTYTCDICGKTFKVASKYKAHVSQHTNPKPYVCNVCNNRYASKAFLNEHLLKHEGLRKHKCQKCGASFAQASHLAAHRHVHGEKTHACPECGRMFNRRDNMKVHRKRHFEQQAKKGLSAAAGGPEPGKDLVAKDDPETKSLLGLQASNENEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -