Gjac008896.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gasteruption jaculator
Gene Symbol
Rreb1
Assembly
GCA_949825005.1
Location
OX463764.1:5790353-5803437[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00077 0.088 13.9 0.0 1 23 88 110 88 110 0.98
2 16 0.0006 0.069 14.2 1.2 1 23 124 146 124 146 0.97
3 16 2.6e-07 3e-05 24.8 1.3 1 23 152 175 152 175 0.98
4 16 0.022 2.5 9.4 0.4 3 23 334 355 332 356 0.91
5 16 1.7 2e+02 3.4 2.6 2 23 362 384 361 384 0.91
6 16 0.86 98 4.3 0.2 1 19 442 460 442 463 0.94
7 16 0.36 41 5.5 0.1 1 23 604 626 604 626 0.96
8 16 3e-05 0.0034 18.4 1.3 1 23 635 657 635 657 0.98
9 16 0.00071 0.081 14.0 1.8 1 23 663 686 663 686 0.97
10 16 0.00052 0.059 14.5 3.0 1 23 1058 1081 1058 1081 0.97
11 16 0.00074 0.085 14.0 0.1 3 23 1336 1356 1334 1356 0.97
12 16 1 1.2e+02 4.1 6.5 1 23 1362 1385 1362 1385 0.97
13 16 0.0047 0.53 11.5 2.2 1 23 1446 1470 1446 1470 0.97
14 16 0.4 46 5.4 2.4 1 23 1582 1605 1582 1605 0.96
15 16 0.013 1.4 10.1 0.4 2 23 1663 1684 1662 1684 0.94
16 16 1.5 1.7e+02 3.6 8.2 1 23 1690 1712 1690 1712 0.98

Sequence Information

Coding Sequence
ATGGGATGCGATGGAGGGATGGAAGGGGAAGGGATGAGAGATAGAAGGAGGGAGGAAAGGGAGGAGAGCAGTGGGAGAAGAAGAAGTGTTGGAGTACAGTACAAAGAAGGATCTCCGCAGGTAGCGAGAGAGTGTGTGACTCCGGAGACGAGGCCGGAACCGAAGCACCAGCCGAACGAGTCTCAGTCGGATGCTGGATCTTCACCAACGATCGAAACCGCTTTGGAAAAACTAAGCGGCAACGGCACCGTCGGCGGTGTCTATCCATGCCCGGCGTGCCCCACGGTGCTCTCGAGCTCGCGGGACTTGACGAACCACCTGCGCGGGCACAATTCCCCCCGCAGCACCGACTGCAGCGGCGAGGAGGACTACTGCTGCGGCGTCTGCCACAAGGTGCTCAGCTCCGCCAGCTCCCTGGACCGCCACGTCCTGGTGCACTCCGGCGAGCGGCCCTTCAAGTGTAAGTACTGCGACATGGCCTTCACGACCAACGGCAACATGAACCGCCATCTGAGGACGGCCCACCGGGGCGGAGCGTCCTCGCCGAACAGCTGCACCGATTCCGAGGCCAGCAGCGACTCCGAGAGGGGCCACCTCCATCACCTCCACGGTCACCATCACCCTCACCATCGTCTTCACCATAACCATCACCACCATCGACGCCAGAACCTCTCGCCGACCCTGAAACGCACCAACTGCAACGCCGTCGACGAGTACAACAACAACGAGCCCATCGCCGTCAAGCGCAACTCCTCCGGGTCCTCGCCCGACCCGGAGCGGCAGCACCATCAGCAAGGCGACAACCGCCTGTCGCCCGTCATCTCCAAACGCAAGTGCCCCGACTACTCGAACGACCGGGAGGACCCGGAGGGCCAACGCAAACGCAAGATCCTCCTCGGCAACTCCCGCGTGGAGACCTCCAGGACCCGCAACTCCTCGGATACCGCcacgtcgacgacgacgacgtcctcctcctcctgctcCTCCGCGATCCTGAACTGTCCCGTCTGCGAGGGACAAGACTTCGCCACCAGCGACCAGCTGTCGACGCACATGGAACGCCACCATCCGGACTACCCGACCAGGTGCGACCCCTGCGACACCACCTTCAAGAACCACCGGGCGATGAGCCTCCACCGGTACATGTTCCACGTCTCGGAGAACTCCCCCTCGGCGGCGACGACCGCCAGGAATCTGCGCAACTCCATCGTCGGCTTCAACGATCTCACCTTCGTCGACTTCTCCTCGGACAAATTCCCCACCATCGCCCGGGCGGTTTGCGAGCAGTCCCTGCATCGTCCAGCCTCCGGGGAGATCGCCAGGTTCCAGTGCGCCAAGTGCCTTCGAGCCTTCCCCTGTCGATCGGCCCTGGAGGCCCACGAGCTGGATTGCGGGAACCATACCGGCTGCGCCCCGGGCCAAGCGAGGACGAGCGAggaacagcagcaacagcaacagcaacagcaacaactcCAAGGCGAGTGTTCGAGACGGGACGACTTTTTCGCCGGCTTGGACCTGCAGAACAGGTCCGCGATGAACGAGCAGCGCGAGGGCGGCAAGGACCTCGCCGATATACAGAGCATCATCTCCGTGACGTCGGGACCCATCCTCCAGAGCTTCCCCGTGACGCCCGACGCGAGGCTGGCCTCGACCCCGACGCCCACACCCGCGCCCACTCCGACGCCGAGCGTGAGCGCGAGTTTGAACTCATCCGCGTCGTCCGGCACGCCCTCGTCCGAGTACCACGAGGAGGAGGCCCAGGACGCCTTCGCCGCCGAGTTCCGGAAGATGAAGCTCAAGGGTGAATTTCCTTGCCGCCTGTGCTCGGCGGTTTACCCGAACTTGCGCGCACTGAAGGGGCACAATCGAGCTCACATGGGCGTACCTGCGGGGAGGCCGTACCCCTGCAACATGTGCCCGTACAACTGTACGGACAAAGCCACCCTGATACGCCATCTGCGCTCGCACAACGGCGACCGGCCGTACGAGTGCGCGATCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGCCACGTGAGGAACCGGCACGGGAAGCTCACCCGGGAGGACATCAAGAGCGTGCTCATCTATCACCCGAGCGAGGACCCGACGAACGAAGACCGAACCAACGGCTCGTCGAGGGTCAAGGACGACGTCAGGAAGGCCCTGGTGTACCCGGAGGAGTCGAGGGTGCGCCCGGTGGCGCACTGCTCTACCTCGGAACAGGCCGACAGGGAAGAAGCGGCCGCTTTCCAGCCGCTGGAGTTGACGCGCAGGTCGAACTCCACCTCCACGGAAATGCTGGAATCCCGGGGCAGGGAGGTGAAGGTCGAGGAGGAGTCTTCGGAAGATGAGGAGGAGCGGGCGGACGATTCGTCTCTAGTCAACGACACCAAGCGGGATTTGGCGATGCAGGTGAGCCCGATGGACCTGAAGAAGGCGACGGTGACGAGCGTGGAGCCCGAGGACGGGCCCTTGGACCTGTCCATGGACGTCCTGGATTTGAGCAAAAAGTCCAAGAGCGGCACCAGCAACGGAAATGGCCATCCGACGATTTCCGCCAACCGGGAGAAGGACTTCTACGGCGGCGGCATTGGCGGCACCGGCAGCGGCCAGTTGCTGCTGACCCAGGCGCTGCTGAAGACCGGCAGCCCCGGTGCGGTACCCGCGGCGgcgacgacgacaacgaccACCCCACCGGGGACGGCGAACTCCTTGGAAGCCCTCTACGCCAACGCGCATTTGTTGTACCGCAACTTTGGCACTTTCCCGGGCACGGGGATCATCCCACCGTATCTTTTTAATCCCCACGTTTTTGGACAAGACTATTCGATGAAGGACAGGCTCCAGAAGGATCTGGTGCGAGGACTGCAACTGACCAGCGGTGGGACCCTGGTGGAGCCCGGTAGCGGGTTTCCCGCGGGCTTCGCTCAGGAACTGCAGCAGAAACAGCATCAGCAGCATCACCACCATcgtcagcagcagcagcagcagcaacaacagcaacagaaGCAGCCCCAGCAGCACCAACACCAGGACGCGACGACGTCCGCTCTTGTCCGGGACAAGCTCGACACCGGGAACTCCTCGGTGAAGATGGTGATCAAGAACGGGGTGTTGATGCCCAAACAGAAGCAGAGGCGCTACCGCACCGAGAGGCCCTTCACTTGCGAGCACTGCTCCGCCAGGTTCACCCTGAGGAGCAACATGGAGCGTCACATCAAGCAGCAGCACCCGCAGCATTGGAGCCAGCGCCCTCGCGGCACCCACTCCACCCGGGGACGGCCCCCAAACCACCCCACGATGGTGGTCCAGAACGCGAACTCGTTACAGACCGGTTACCCTGGCATTTTACCAAAGAACCCCGACTACAAGCACGCCATCTCCGACCAGGTGAAGTACGCGATCCTGGCGCAGCAGCTGAAAGGCGGTAACTGCGTGGCCAAGCCGGAGGAGGACTCCGACGAGGAGTTGATCATCGACGAGGACAACAAGGAGCCCCAGGAGCAGAGTCAGAGTCAGAGTCTCCTGCGGGAGAAGCTCGAGGAGTCGTCGGTCCAGGAGGCTCCCGAGAGAAGCCGGAGGAGGAGCAGCAGGACCaacgacgaggaggaggaggacgacgacgacgacgaagaggaggacgaggacgacgaggaggaggatCGGGACGACGAGAAGGGACGCGAGAAGCGCGCGAAGCTGGAGGACGAGGAGGAGCGCATGGACCTCGCGAGCGTGGCCGAGCTGCTGGACAACGCGTCGCAACAGTACCGGCAGTTTCGGCCCCAATACTTGAGCGACGAGGAGGGTCTGGTGGCGTCCACCAGCGACTGCAACAACTCCGGGTCGGACGAGAAGTCGGACTCGGTGAATTCGGGCAATTCCGCCAACGCTTCGGAGTCGACGTCGCTGgcgcagaagaagaagaagaaaaaaatgaagaagaagaagaagaagaagtcaGCCTATTCGATGGCCCCCAACCGCGTGATCTGCCCTTACTGCGAGCGGCCCTTCCCGTGGACCTCGTCTTTGCGCCGCCACATCCTGACCCACACGGGCCAGAAGCCGTACCAGTGCATGCACTGCTCCTTGCTCTTCACCACCAAGTCCAACTGCGACCGTCACCTGCTGCGCAAGCACAAAACCAATCCCAACAAGATGCGTCGTATGCGGAACTCGTCCTCGCCGGAGATGACGTCCGCGCCGACGACGATGGCGGCAGCGGCGGCGGAGGCAACGACGATGCCCGCGACGAGCCTGCCGGGGGCCAACGGTGGCACCGGCGCCGGCTTCTCGATGAGAAACGTCCCGGAGAGGCCGTACAAGTGCAATCAGTGCCCCAGCTCGACCTTCTCGACACTaggtaatttgaaaaagcaCCGTTCCACCAAACACTCGTCGCCGAGTAAGAAGTGCAAGTCGCGCTCGGACACGCCGTCGAGCGAGGCCCAGAACAGCGGCCCCGAAACCACGTCCAAACAGAACGACCAAAGCGGTTACGAGAGCCAATCTTCGTATGTTTCAGAGACTCTCGAAAACGCCTCCTCCGCGGCTTTGGCCAAAcctagcaataataataacaataataataccaataataacaacaacaacaacgccAATGTcggtaacaacaacaataacgcGCATAACGCCCCCTCGTCGGCCATCGACACGCCCAAATCGAGAAAAACCTCGCCCCGATCGTCGCCTGGGCCCACGGACGCGCCCTTCAAGTGCCACCTCTGCGACAGCGGGTTCGCGGATAGGCAGGATTGCCTCGAGCACATTAAGATCAACCACAAGAGGTCCTACGAAATGCTGGTGGCCAAGGGCGCCCTGGACATGGATATCGACGTTGCCGAAGAACAACcccagcagcagcaacagtcGCAACAGCCGCAGCAACAACCCCATCCGAGCGACGGCGAAGAGAAGAGAGGACGGTTTCCGGATTACAGCAACCGAAAGGTAGTCTGTGCCTTTTGCATGCGCCGCTTCTGGTCGGCCGAAGACCTGCGCCGCCACATGCGGACCCACACCGGGGAGCGGCCCTTCTCCTGCGACATCTGTTGCCGAAGGTTCACCCTAAAACACAGTATGCTGCGTCACCGCAAGAAACACGAATCCGTCGACTCGGCGATGTACGTCGGCACCAGCGGCGACGAGGAGTCCTTGCCCGTGCTGGCGCAGCCGCCGACGATAGCGCCGCGGTGCCAACAGCTGCAACTGCATCAACAGCAACAGCCtctgtcgtcgtcgtcgtcgtcgacgtcTTCGTCCTCCGGGACCGCGAGCCTGCGGGCCATCTCCTCGCTGCCGACCATCACGAGCGTCGCCACCGGCGACGCCGCGCCAAGCGGCCTGATGCGCTTCAACAACCCTTACGAGAAACTCACCACCTTAACGGGGAAGCTCACCGCCAGtggcagcagcggcagcagcagcggcagcagtgGTATGATGCTGCAGAATAATAGCAACGACAGCAGCAATAACGAGAACACCGACAACGATCTCATCTCCAACCTACTGGGGATTCGCGACAAGAGCTTCATCGACCGGGTGCTGCAGGCCTCGGCCGACGACGCCGCCAAGTTGCTCGGAGTCAATAGAACGCACGATTAA
Protein Sequence
MGCDGGMEGEGMRDRRREEREESSGRRRSVGVQYKEGSPQVARECVTPETRPEPKHQPNESQSDAGSSPTIETALEKLSGNGTVGGVYPCPACPTVLSSSRDLTNHLRGHNSPRSTDCSGEEDYCCGVCHKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHRGGASSPNSCTDSEASSDSERGHLHHLHGHHHPHHRLHHNHHHHRRQNLSPTLKRTNCNAVDEYNNNEPIAVKRNSSGSSPDPERQHHQQGDNRLSPVISKRKCPDYSNDREDPEGQRKRKILLGNSRVETSRTRNSSDTATSTTTTSSSSCSSAILNCPVCEGQDFATSDQLSTHMERHHPDYPTRCDPCDTTFKNHRAMSLHRYMFHVSENSPSAATTARNLRNSIVGFNDLTFVDFSSDKFPTIARAVCEQSLHRPASGEIARFQCAKCLRAFPCRSALEAHELDCGNHTGCAPGQARTSEEQQQQQQQQQQLQGECSRRDDFFAGLDLQNRSAMNEQREGGKDLADIQSIISVTSGPILQSFPVTPDARLASTPTPTPAPTPTPSVSASLNSSASSGTPSSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCSAVYPNLRALKGHNRAHMGVPAGRPYPCNMCPYNCTDKATLIRHLRSHNGDRPYECAICNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPSEDPTNEDRTNGSSRVKDDVRKALVYPEESRVRPVAHCSTSEQADREEAAAFQPLELTRRSNSTSTEMLESRGREVKVEEESSEDEEERADDSSLVNDTKRDLAMQVSPMDLKKATVTSVEPEDGPLDLSMDVLDLSKKSKSGTSNGNGHPTISANREKDFYGGGIGGTGSGQLLLTQALLKTGSPGAVPAAATTTTTTPPGTANSLEALYANAHLLYRNFGTFPGTGIIPPYLFNPHVFGQDYSMKDRLQKDLVRGLQLTSGGTLVEPGSGFPAGFAQELQQKQHQQHHHHRQQQQQQQQQQQKQPQQHQHQDATTSALVRDKLDTGNSSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGTHSTRGRPPNHPTMVVQNANSLQTGYPGILPKNPDYKHAISDQVKYAILAQQLKGGNCVAKPEEDSDEELIIDEDNKEPQEQSQSQSLLREKLEESSVQEAPERSRRRSSRTNDEEEEDDDDDEEEDEDDEEEDRDDEKGREKRAKLEDEEERMDLASVAELLDNASQQYRQFRPQYLSDEEGLVASTSDCNNSGSDEKSDSVNSGNSANASESTSLAQKKKKKKMKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKTNPNKMRRMRNSSSPEMTSAPTTMAAAAAEATTMPATSLPGANGGTGAGFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHSSPSKKCKSRSDTPSSEAQNSGPETTSKQNDQSGYESQSSYVSETLENASSAALAKPSNNNNNNNTNNNNNNNANVGNNNNNAHNAPSSAIDTPKSRKTSPRSSPGPTDAPFKCHLCDSGFADRQDCLEHIKINHKRSYEMLVAKGALDMDIDVAEEQPQQQQQSQQPQQQPHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSAMYVGTSGDEESLPVLAQPPTIAPRCQQLQLHQQQQPLSSSSSSTSSSSGTASLRAISSLPTITSVATGDAAPSGLMRFNNPYEKLTTLTGKLTASGSSGSSSGSSGMMLQNNSNDSSNNENTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVNRTHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-