Gjac004185.1
Basic Information
- Insect
- Gasteruption jaculator
- Gene Symbol
- drl
- Assembly
- GCA_949825005.1
- Location
- OX463761.1:24401047-24404475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.51 58 5.0 0.1 2 19 381 398 380 402 0.89 2 15 0.096 11 7.3 2.1 1 16 443 458 443 465 0.81 3 15 0.041 4.7 8.5 2.2 2 23 473 495 472 495 0.94 4 15 2.1e-05 0.0024 18.9 1.6 1 23 501 523 501 523 0.98 5 15 1.3e-05 0.0014 19.5 3.2 1 23 529 551 529 551 0.97 6 15 1e-05 0.0012 19.8 1.7 1 23 557 579 557 579 0.98 7 15 0.0013 0.15 13.2 2.2 1 23 634 656 634 656 0.99 8 15 0.011 1.3 10.2 0.1 1 23 663 685 663 685 0.92 9 15 1.1 1.2e+02 4.0 5.8 1 21 699 719 699 720 0.94 10 15 0.00088 0.1 13.7 0.1 2 20 728 746 728 748 0.94 11 15 4.4e-07 5e-05 24.1 1.2 2 23 797 818 796 818 0.97 12 15 0.027 3.1 9.1 1.8 1 23 824 846 824 846 0.96 13 15 0.00016 0.018 16.1 0.6 1 23 852 874 852 874 0.94 14 15 2.7e-05 0.0031 18.5 0.1 1 23 880 902 880 902 0.98 15 15 2.1e-05 0.0024 18.9 1.4 1 23 908 931 908 931 0.98
Sequence Information
- Coding Sequence
- ATGGAACCACCGTCACACCAAAGTACAAAACTGGAACAGCCGCTCGGAAACTCGGAACAAACACTGGACACGAAAGATACGAACAAGGACAAAATCCTGAACTTCGTAGAAAATGCGAAAGGAACGACCAACGaaaccaacaatttttatccccTGCAGAATCTGTCGGAGTATCTGAAAAAAACCCATAAACAGATCGTAACGGTACCGAAAGGGAGTCGTGTTGTTCCCTTAGTATTCAAACCGATGCTTCGACCCGTTCAGGTTCCACTGGTAACCCAGGGGAAGGATACCGGAAAGATTATCCTGAATGTCAATACGAAACCTTTGCTGGTGTTAAAACTTCCCTCGAATCCGACTCCTCGGTTGGATGCAAATAATTACTGTCGACTCTGCgctcaaaaatttgaaagcatGTTACCTCTGCTGGGATCGAGCGACATTCAGAAGGAGATgttgtcaaaaatcaaaaattgtctacCAATTTCGGTGCAGGCAATGGACACGTTCCCCAAACAAGCATGTTTCACGTGTCTGAGGAAACTGAATTTTTGCTACGACTTCCAAGAGACCGTACTTCGAGCTCAAAACGACTTTGTGAAAATGGGCTTTTTGAACACGAACACGACCGTTCGGAACgtgtattttcaacaaattcggACGGAATCCAACTTGGTCTCCGAAACCTCCAGTAGCGAGTCTACGAGTGTCAAGTTCATGTCCCCATCGGAGGAATCGAAAGCCGAGGAGAACTTATCCGCTATGGAAAACCCGAGTTTGATTCTCGACGAGCATCTACCCACCGAATCTTCTCTCTCGGTAGAGATTTCAACGAGCGAAGATCCTCCACCATCGCCGTTGAATAACTGTACCGACAACAAAAATTCCTGGATAAAGGAAAAACAGTCACCCGATACCGATAAAACCGATGATCCTTCGATGGATACGTCCCAGTTCGAGGATGTAACTTTCTCCGAAATGGAAGAAGAGGGAACCGAGATCGCTCGAGAGGAAGAAACTCCGATTGTATTTGCTCCCCCTCCGCTGGACCACACTTACAGCGGAACCTGCGCGAAAAGTTATACACAGGAAACTCGAAACTCGAGTAAGTCGAAAACCGAGAAGGAGTCGAAGTGCCTGAAGTGTCGAATCTGCCAAGAGAAATTCCAAACGGCCAAGGAGGCTCGAGAGCACGCCCCGATTCACGCCGAACCGAACTACCACCCCTGTTGCCTCTGCACCAGGTTCTACGACACTCGCGAGAAGTGCGACACTCACGGTTTGATTCACACCGATGGCAAGAAGTGCCAGCGAAGGGCAGCCGTACATGCCTGCGACAAGTGCGACAAGAAGTTCGTGACCAAGGAAAGGCTGGACTTCCACTTGACCTTCCACAGACCCGATGCGAGACCGTGCTACTGCGAGAAGTGCGACAAGTACATCGTCTCCGAGTCGTCGCTCTACCACCACGTGCTGATGGTTCATCAGCAGTTCAAGGAATTCTGCTGCGACATCTGCGGAAAGCAGTTTCGGGCGCAGGTGCAGCTGGACGCGCATCAGCGGAAACACAAGAACGAGCGTCCTTTCGTCTGCTCGTTCTGCGACAAGTCCTTTTACTCCAACGAGACCCTGAAACGACACAAGAAGCTGCACCTTCCGGAGAAGCCGTATTCCTGCAACCAGTGCGGTCGAAAGTTCGACAGGACGAACGCCCTCACCAAACATCTGCTGAAGCACCAGGTGGAAGCGGGGAGAGTGTCCGAGTGTCTCTCGTGCGTTCGCTGCGGCGAAGTCTTCCTGGATCCGCAGCAAGTGGACTCGCACGTCGGTCGATGCGAGTTCCCGGACGAATCCGCTCCGGAGGAGCTCCGATTCGAGAGACAGGAGCTGCGGATGGTTTATCGGTGTGAGTTCtgcgacaaatatttttcccagGAGAAACGGGTCAAGGAACACGGTAGAACTCACCAGGATGGGCCGACGCCCTACGTTTGCCTGATCTGTAATATCAGTTTCGCGACCTTCAACCAAGTGACCGCGCACAAAGTGGCCCACAGGAAGTCCAACTCCCAGGAAGCGACCATCCCTAGATACTTTTGCTGCCAGTACTGCTCCAAGACGTTCCTGCACTTCACGAACATGAACATCCACCGGAGGAATTGCTCTCGTCGGAAGGCCAACACCTGCCGATACTGTCGGAAGGTCTTCGACACCCCCAACGACCTGGCCAACCACCAAAGCGGCATCGACTCCCAATCCCTGGAGATCTGTTACTGCTACGAGTGCAACCTGGCCTTCGGCTCGGTGTGCGCTCGGGAGAAGCACCGATACCTGCAGCACAGGGGGGAGACCAAGGGCTCCGAGAAGAAGGAGTGCGAGAAAACCAGCGTTTGTCCCCATTGCGGAAAGGCCTTCGGCCAGAAAACCCACCTCGCGGTGCACATCAGGAGTCATACCGGAGAACGACCTTATTCGTGCGACCAGTGCGagaaaactttcaaaatcaaGATGGAGCGAGACTACCATCGCAGGGTGCACACCGGCGAGAGACCGTTTCAGTGCAAAGTGTGCGCGAAGACCTTCACCAGACCGGCTCGGTTGCGAGAGCACGCCTTGTTCCACACGAACGTGAGACCCTACGAGTGCAGCATCTGCGGGAGAGCTTTTAAAAAAGCCGATGCCCGTAACGTTCACATGACCATCCACACCGGGTCGAAGCCCTACCGTTGCTCGATCTGCCAGACGAGCTTCCGCAGGACAGGAGACATGAGGAAACACGCGAAAACTGTGCACGACTGCGAGCTGATTTTGAGTTCCCCGGTGGTGAGTTCACCAGGAAATGGTGGCACGGAGTGA
- Protein Sequence
- MEPPSHQSTKLEQPLGNSEQTLDTKDTNKDKILNFVENAKGTTNETNNFYPLQNLSEYLKKTHKQIVTVPKGSRVVPLVFKPMLRPVQVPLVTQGKDTGKIILNVNTKPLLVLKLPSNPTPRLDANNYCRLCAQKFESMLPLLGSSDIQKEMLSKIKNCLPISVQAMDTFPKQACFTCLRKLNFCYDFQETVLRAQNDFVKMGFLNTNTTVRNVYFQQIRTESNLVSETSSSESTSVKFMSPSEESKAEENLSAMENPSLILDEHLPTESSLSVEISTSEDPPPSPLNNCTDNKNSWIKEKQSPDTDKTDDPSMDTSQFEDVTFSEMEEEGTEIAREEETPIVFAPPPLDHTYSGTCAKSYTQETRNSSKSKTEKESKCLKCRICQEKFQTAKEAREHAPIHAEPNYHPCCLCTRFYDTREKCDTHGLIHTDGKKCQRRAAVHACDKCDKKFVTKERLDFHLTFHRPDARPCYCEKCDKYIVSESSLYHHVLMVHQQFKEFCCDICGKQFRAQVQLDAHQRKHKNERPFVCSFCDKSFYSNETLKRHKKLHLPEKPYSCNQCGRKFDRTNALTKHLLKHQVEAGRVSECLSCVRCGEVFLDPQQVDSHVGRCEFPDESAPEELRFERQELRMVYRCEFCDKYFSQEKRVKEHGRTHQDGPTPYVCLICNISFATFNQVTAHKVAHRKSNSQEATIPRYFCCQYCSKTFLHFTNMNIHRRNCSRRKANTCRYCRKVFDTPNDLANHQSGIDSQSLEICYCYECNLAFGSVCAREKHRYLQHRGETKGSEKKECEKTSVCPHCGKAFGQKTHLAVHIRSHTGERPYSCDQCEKTFKIKMERDYHRRVHTGERPFQCKVCAKTFTRPARLREHALFHTNVRPYECSICGRAFKKADARNVHMTIHTGSKPYRCSICQTSFRRTGDMRKHAKTVHDCELILSSPVVSSPGNGGTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -