Gjac024523.1
Basic Information
- Insect
- Gasteruption jaculator
- Gene Symbol
- -
- Assembly
- GCA_949825005.1
- Location
- OX463775.1:7461232-7465309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 1.6 10.0 0.3 6 21 12 27 6 28 0.86 2 13 0.59 68 4.8 0.3 1 12 213 224 213 233 0.89 3 13 0.26 30 5.9 1.5 1 19 358 376 358 380 0.92 4 13 9.2e-06 0.001 20.0 0.6 2 23 384 405 383 405 0.98 5 13 2.4e-05 0.0028 18.7 2.3 1 23 416 438 416 438 0.98 6 13 0.16 18 6.6 0.2 1 23 459 480 459 480 0.80 7 13 0.0028 0.32 12.2 0.0 2 23 486 507 485 507 0.95 8 13 0.0001 0.012 16.6 3.9 1 23 574 596 574 596 0.98 9 13 2.2e-06 0.00025 21.9 3.7 1 23 602 624 602 624 0.96 10 13 0.00026 0.029 15.4 4.1 1 23 630 652 630 652 0.97 11 13 7.3e-06 0.00084 20.3 0.8 1 23 658 680 658 680 0.98 12 13 0.00015 0.018 16.1 0.3 1 23 684 706 684 706 0.99 13 13 0.00019 0.022 15.8 0.2 1 23 714 736 714 736 0.98
Sequence Information
- Coding Sequence
- ATGGGGACGTTGAACCTCATCTGCCCTATGTGCTGTGGCGAAACTTTCAGTGACTCTCAATCCCTAAAGTACCATTTGCTGTCCATGGTGGACAATTTGTACTGTCCAGAATGTTCCCACCAGGAAGACTCGGTCCTGGGACTCATCGAGCACTTAGACAAGTGCCACAATAATAACGATATGGTCGTGAAGAAAGACGAACCCAGGAACGCACCCACGGAAGAACCCAAAGAAGAGTCGACGAAGATCTTGATGGAAAGAAACGGACGAGGTTTCTTAACCGCCCCAAATGGGGAAATTATGATTGTCGGAAGAACGCAAGGAATCCAGCTTAATGaaaatgGCGAAATCAAAGTTATGGAAAAGATGGAAATGGACGAGGAAAGTCAGACATGTTCGGTGGACGTTCAAGACTTTTCTCTCGCCAGGATGAAAAAAGGTACCTCTTTGAAGTCGATCGACAGGAGCGACGATCAAACCGAAGATAATTCTGTGATTTCCTTGATATCGAATACCGAGACTCTAGTCGACGAAAGCGATCAGTCGTTAATAAACATTGATCAAGGCGATCAAGATGATTCTGGCTTACTGCGAGTGAAACAAGAACTCTGCGAGACAGAGGCATCGGATTCCCTCTACAGCTGCAGCAGCTGTGGAATGAGTTTTAACTCGGTCTTGGAACACATCAAACAGTTTCACGAAGGACAGGAAGTGGTACTGGAAATGGCCGAACAACAGGCAATGCCCGAAAGTCCTCCTCCGAGTCAACCCGCAGTCGCTGCTGTGGTTCCTGGGGTGAATGCAACTGCAGCTTCGCAGGGAAACGTCGTGACTTTGCGACAACGACAAACGATGAACACTCTGCGCACCGAAGAGTGTGTCGACAGCGAAGGGCGACTTTACACGAGGAAAGTCGTACAAATCGAACGTTTTTGGGATCAGCGAAATCATCCTGAACACAATTCACGTTCGAAAGCTTCGCCCATGATCGAAAAGTTTTTTTCCAACGTTCAAGGAGTCAAAGTGAGAGAGAAGAGTAGCGGTGGAGCCGCAAATCCCCAGGCTAAAGTGTACCAATGCACGCAATGTTTGgagaaattcccaaaactGGGGGAATTTCGAATGCACCCGTGTATTCACGGGATGAACCAATGCGACCACTGCGATCAAGCTTTCGCAACTCCGAAAGCTCTGCAATTGCACGTAAAAACGCACGAGGAGAGTGGGACGATTCCCAAGCAAAATTTTACATGCGGTATCTGCGGAACGGAGTTCTCGACCCATAAAAGTTTACGACTGCACTCGAGGATGCACGCACCGGTTCGGGCGAGACACGTCGATGCACCTGAAGGTGCACCAGCCAGTACCGGACATTTCACGTGTCTGGAATGTGGTAAAACCCTGTCGGAATCGTACAAAGATGCGCACATGGCGCTGCATACCAGTGGCGCGGTGACTTGTGCCGTGTGCAACCGCAAATTCGACACCGCCGAAAGCTTGGCGATGCACGCGGCGGTGCACAATGAACTGCAACAAGTCCGAGTTTCCTCGCCACTCACGCTCAACAATTGTACCGTGACGAACGTCACCTCGGCGCTGACGGCTGCCGAAAATACGTCGCAATTGAACCCGTCCTCGACCGATACGTCGATGAACGTGGCTCAAGAAGAAACTGCAGGTGGTGCAGCGGCTGCTACTAGCGCCGACAGTCAGAAACCCTATCGCTGCCAGCACTGCGGACGAAGGTTCGCGCGACCTCACGAAAAAGTCAAACACGAGAGAATCCACACCGGGGAGAAGCCGCACGCTTGCGAAgtcTGTGGAAAAACTTTCCGGGTCTCCTACTGCCTGACGTTGCATATGAGGACGCATACCGGCGTGAGACCGTACGCGTGTCAACATTGCGGCAAGAGATTCAAGGCGTCTTCGGTCTACAACCACCATTTGCTGACGCACGGTGACGAACGTGCGTACACTTGTCCCTTTTGCCCGAAAACGTTCAAGACCCGGGTGCAGTTGGCGGGGCACAAGAACAGTCACACGAAGCCGTTCCGTTGCACGGAATGCTCCAGGCCCTTCGCCTCTCTCTATGCAGCCCGGTCGCATATTCAAACGCATAAGAAGGACAATAACTTGAAGTTCAGCTGTTACATTTGCGGTGCCTCCTACGGGCGAGCCTTCGCTTTAAAGGATCATCTGAGACAACACGGCCAGGACGGTCAGGTGTCCCAGGAGCCGACGCAGGTCCAGGAGATCATCATCCATCACACCCCCGATGACTTCCTGCTGGCCGAGGAGGAGGTGGAAGATGATGAATTGGTCGTGCCTTCGCCGGTGGATCCGCCTATGCAGTCGTCGGAGCCGGAAGAGTCCGAGTAA
- Protein Sequence
- MGTLNLICPMCCGETFSDSQSLKYHLLSMVDNLYCPECSHQEDSVLGLIEHLDKCHNNNDMVVKKDEPRNAPTEEPKEESTKILMERNGRGFLTAPNGEIMIVGRTQGIQLNENGEIKVMEKMEMDEESQTCSVDVQDFSLARMKKGTSLKSIDRSDDQTEDNSVISLISNTETLVDESDQSLINIDQGDQDDSGLLRVKQELCETEASDSLYSCSSCGMSFNSVLEHIKQFHEGQEVVLEMAEQQAMPESPPPSQPAVAAVVPGVNATAASQGNVVTLRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDQRNHPEHNSRSKASPMIEKFFSNVQGVKVREKSSGGAANPQAKVYQCTQCLEKFPKLGEFRMHPCIHGMNQCDHCDQAFATPKALQLHVKTHEESGTIPKQNFTCGICGTEFSTHKSLRLHSRMHAPVRARHVDAPEGAPASTGHFTCLECGKTLSESYKDAHMALHTSGAVTCAVCNRKFDTAESLAMHAAVHNELQQVRVSSPLTLNNCTVTNVTSALTAAENTSQLNPSSTDTSMNVAQEETAGGAAAATSADSQKPYRCQHCGRRFARPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDERAYTCPFCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARSHIQTHKKDNNLKFSCYICGASYGRAFALKDHLRQHGQDGQVSQEPTQVQEIIIHHTPDDFLLAEEEVEDDELVVPSPVDPPMQSSEPEESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -