Basic Information

Gene Symbol
-
Assembly
GCA_949825005.1
Location
OX463776.1:4436285-4449645[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 8e-06 0.00091 20.2 1.0 1 23 233 255 233 255 0.98
2 28 0.0034 0.39 11.9 1.9 1 23 280 303 280 303 0.96
3 28 0.00017 0.02 16.0 0.5 2 23 310 332 309 332 0.96
4 28 0.0013 0.15 13.2 0.5 1 21 358 378 358 379 0.95
5 28 0.24 28 6.1 0.1 2 23 485 506 484 506 0.94
6 28 0.011 1.3 10.3 0.5 1 23 512 535 512 535 0.93
7 28 0.00015 0.017 16.1 0.1 1 23 618 641 618 641 0.96
8 28 0.01 1.2 10.4 0.4 1 23 647 670 647 670 0.96
9 28 0.15 18 6.7 1.5 1 23 683 705 683 705 0.97
10 28 4.5e-05 0.0052 17.8 0.9 3 23 768 789 767 789 0.96
11 28 0.0079 0.91 10.7 0.7 2 23 853 876 852 876 0.93
12 28 4 4.5e+02 2.2 0.0 2 23 885 907 885 907 0.83
13 28 0.063 7.2 7.9 0.1 2 23 914 936 913 936 0.96
14 28 1.7e-05 0.0019 19.2 1.2 1 23 944 966 944 966 0.98
15 28 0.048 5.5 8.3 1.0 1 23 990 1013 990 1013 0.95
16 28 0.19 22 6.4 3.7 1 23 1016 1039 1016 1039 0.96
17 28 0.037 4.3 8.6 0.7 2 23 1046 1068 1045 1068 0.96
18 28 0.0015 0.17 13.0 4.8 1 21 1097 1117 1097 1118 0.96
19 28 0.028 3.2 9.0 2.2 2 23 1132 1153 1131 1154 0.93
20 28 0.047 5.4 8.3 0.9 2 23 1188 1211 1187 1211 0.90
21 28 3.9 4.5e+02 2.3 0.2 2 23 1219 1241 1219 1241 0.94
22 28 4.6 5.3e+02 2.0 0.0 2 23 1248 1270 1247 1270 0.87
23 28 1 1.2e+02 4.1 2.7 2 23 1279 1301 1279 1301 0.95
24 28 0.059 6.8 8.0 0.1 1 23 1361 1384 1361 1384 0.97
25 28 0.0002 0.023 15.8 1.0 1 21 1423 1443 1423 1444 0.95
26 28 0.45 51 5.2 1.0 2 23 1511 1533 1510 1533 0.94
27 28 0.78 90 4.5 0.9 2 23 1540 1562 1539 1562 0.95
28 28 6.1 7e+02 1.7 2.6 1 23 1573 1595 1573 1595 0.92

Sequence Information

Coding Sequence
ATGGATTTGACCATTTGCCATCATCGTCTTGGTAAAATTCCTGGATGGATGTGCACCTCGATAGCAGAAGACGATCGTCTACCAAAATGTCTGTGTTATCGGTGTATGTACAACTTGGAGAATTTCTACGACTTCCGAACGGCTTGTGTCAATGCCGTTGCTATTCTGGAGAGGCGACTCATGATGGAAGACgcgtcATACGGAAGGTTGCAGAATCACATTGCGAGTCGCACATCATCCGAAATTCCAGAGGATATCTTGAAGGGAAAGGAAATCATGTTACCATCGTGTCTTATACCAGAAGCACCCGTTGTTAATCCAAACGCTGCCCTTGGTACACCCCCAAGGCTCAATTCGGATGGCGAAGCTTGTCACGAGATCGAAGAGATTTTGGACCACAGTGGTACCGACGAAGCCGAGAACGAAGTGGACGATCGTAAATCCGACGAATACGAAATGGACATGGAGACAAACCCCAGCGATTTCCTTGAAATGCCACCAATGGTGACCGAAGATAACGAGGAAAGTGACGGTGGTGGTGCTGGAAATCGGCAACAGAATCAGGATCGATCGGATCCAACTCCAATTCGTTTAAAGGATCAACaccagcagcaacagcagcaacaacaacaacagcaacaacagcaacaaccaCAACAGAATGTTTTTCAACGCACATCGGAACAACATGAAGTTTACGTATGTTCGTTGTGTAATAAGGCCTTCAGTTCGAAAGGACATTTGTCTCTTCACGCACGAATTCATGTGGGTGCAGCTGCTGGCGATGTCATCGGTGAGAAAGTTATCACTGATGATCATACATCGTATAAACGTCCATACCAATGTGACCTTTGCAACAAATCATATTCTACTGCCAAACATCGATGGGGACATGTTTCCACTACTCATAGaggACATCCAGCAGTTACTTGTGGCTATTGCTCGCGTATTTATTCGACAAGAACGAACTTGGAGGAACACATTAAATCGCGACACGCAGGATTACCGATTCCACAAGAGATAACGAACAACCAAGCTCTTCAATCGTACAGTCAGGCTAAAAGTCGGCAATTCCAGTGCAAAACCTGTCCAAAAATATACACGAGTGTCACGGAATTGAACAAACACAGCAGATTATGTTTGGGCGAAAGACAGCAGCAAATCAACAGAATACGTAacatgaacattttgcaaaaggGTCAAAACGATCAGATGAACCAAATGATGGTGGACACCACGCTGTCGGACCTTTCCAGTATAGATTCCGATGAGGAGAGTAAGGATTACAGAACAGCCGAAGCTAAACTGGCTAAGAATCCTCAACTGACTATTTTGAAACAAGCTCTTACCAAAAGCGATGTAAAAAGAGATTACGATGACAAAAGTCGAAGTAAACATAAGAAATTGCCCAGAATTGGAGATGGCTGTGAAACCGAAGTGGAGAAACGATGGTACTGCGAAATGTGTCCGCAAAGTTTCTTATCCGTTGAACAGTTGAAAGAACATGAAATTTCGCACGATGCCGATAAGCCGTTTGTTTGTATATTATGCAAAAAAGATTTCGTATTAAAGTCTTCGTTAAGTCGGCATATTTTATCTTCGCACGGTGTCGATCCGAGTCCTATTTTAGACAGTGACAAATGTATGAAACGGAGTGTATTAGCGTCAACAGGAATTCCGCAGTTACAAAGTTGGAACGATCAAATGGAAATCACCagaatcaaagacgaaaattttACCAAAGAAAACATCGACTCGCCTTTATCTCCAAATGagaATCCAATGGACACAaatgacgacgacgaggatCCTGGAAGGAACACGGAAAATATGATCGAGATTGAAACAGTTTTCGTTTGTGAAATCTGCACGCGAGATTTCAACGATCGCGCTTCTCTTTGGCTTCATATACGCGCCACCCATAAAGAATTTGCCGCTTTTGCCTGTGGCGTTTGCTTAAAGATATGTTCGGATAACGCGCAATTGTTGAATCATGTAAATATGTATCACGGAGGATCGAAACTTTTGGTTTCCGAACAAAGAAgGTACAGTTGTACAATCTGTGGCCGTCAGCATGACTctcgtaaaaaattaataactcatGTATCCATACACAATGTTGACCCTAGTTACGATCCAGCAAGTTTCGTACAGTTAAACACAAACtattacaatgaaaatttcaataacagtGACGTGAATGAACAGCAACAGCTGTCGCAGCACCAATCCTTACCCGAACAGCTACAGATACAACcacaaattattgattttgatgCTGAGGATGGCGAAAAAGTTGATTGTTATATCTGCTATAAGTCATTCCCTAATGAGGATCATTTAATAAGACATCAAAGAAACGCCCATAAAtCTGAACAGATGCTCGCTCCATTGGATCCAACAAATAATGGCAATGGTAACTCATCAAACCCTGGACAGATAAATCGTGCGCAGTATCATTTGTTCTTCGTTTGCGAACTTTGTGGTAGCTCGCATCCAAGCAAATGGGAACGTTGGCTGCACGTTAGCAGTGCTCATAGTGAAGAGCCTTCTATTAAGTGCGAGCGGCCTGACTGTGGAAAAATATTCGCAACCAAATCTCTCCGCAACGACCACGCTCAGCATCACCAGCTGCAAGGTCCGTCACCGAACACGTGCGAAATTTGCGGAAAGTTATGGGGCAGTCGCGTGGATTATTGGAAACACGTGATGGGAGTCCACTCCGACACCGTTCCACTGATCTGCGGTGTTTGCTTGAAGGTCTTCCCGGACGTGTTGAAATTATCACAACACGTCCGCACGAATCACTGGCCTTTGACGAACGGCGACTTCAGCTGCGACATTTGCGGGCGCCCTTACTCCAACAAGTCCAAAATGTCCCGCCATCGTAAGATCCACGGTCTCGAAAACCTGGAGTACCAGCACGATTCCATGAAGAACCACTTGGAGCCACCCGAGAACCAACGCTTCATCTGCGAGATGTGTCAGGAGAAATTCACGAGCTTCCAGGACATCTCCAACCATCGCAAAAACGTTCACAAACTGTTCCCCTGCGACCTCTGCTGCAAATTCTACGGCAGGACCTCGCATCTGTGGAAACACGTGAACCGCGTTCACAAGGGGCACGAGGACGTAACTTGTCGGTTCTGCCTGAAAACCAGTGCTTCTAGGGAACATTTGGCGGCGCACATTCTCAAGATCCATCGGTACGAGAGTCAGTCCAACAGCATTTCCAACGAGAACGACTACGAGCTGGAGGAAGCCGAGGAGAACGTCACCCCGACGTCGCACACTTGCGACCGGTGCAAGAAGTCCTTCCACAAACGATACCTGCTGCGACGTCACATGAAAGGCTGCCAGAATTACCGCAAGGATCCCTCGGCTCTGCTGACCCGCTGTCGAGCTTGCGAGCGGATATTCAAGGACCGCTTGAGTCTCCAGAAACACATCGAGAACCACCACAGCGTCTACAAGTGTCATCTCTGCGAGGACACGACGATCGTGTCGAAACTCGGGATCATGACGCACAATCGCATCCATCACATGAACCATCCGGACTTGACTTGCCAAGTGTCGAGTTGCAAGAAGCTGTTCCGGACGCTGGAGGACCTGGAGAACCACCGGAAGGACCACAAGTACACGGCGTCGCCGAACGTGTGCGACTTCTGCGGCGATACCGTGGAGAACAAGCTGAAGCTGAAAATGCACGTTTTGTCACTGCACCGAAACGAAATCGGCGTGTCCTGCGGCGTGTGCCTCATCCCCATGAAGGATCCGAAGGATCTCAAGAAACACGTGGAGGACGTGCACAAGAGCATCCTCACCAAGGTCAACACCTGCCGAGTTTGCGGGAAACAGTACGCTTCCAAATGGAAGGCTTACGATCATACGAAGAAATGCCACGGGAAGGTCTTCAAGACCTGCAAGCAGTGCTTGGACGTGTTCACGAGCGATATCGAGATCCTGAAGCACTACGAGAAGGTGCACAACGTGATCACCAAGGACCGAGTGGCTACTTTGAAACATCCCGACAGAAACAACGCCGCCGGCACGAACGACAGGAAACGGAAGAAGGAGACGTACGACTGCGAGGTCTGCCCGGAAATCTTCCTGACGGAGTCCATGTTGTCGGAGCATTACAAGAAGATGCACAGCGACTGCAAAAGGTACAAACGGAAGAAACACGACAAGAAGCCCCTGGAAAATACGTCGGCGAGTTTCGCCACGACCGCGGCGACGACGTCGTCGTCTTCAACGTCGGCGACCTTCGTCTGCAAGAACTGCAACAAGGAGTTCTCGACGAAGACGCTCTTCTGGAACCACTTGAACTCCTGCAAGAAGAGGAACATTTCCACCTCGTCCTCCTCGGCTTCGGCTTCCACGACCATGAGTAACCAGTTCACGCCGGATTTCAACCTCTTCGAGAAGATCAACCTGAACCTGCAGCAGCAGTTCGAGAAGAGCTACAGCAAGAATCACCATAGGAAGGACTCCCGGAAGGTTTACGACGAGAGCACGAACACCGAGTGCGCGTGCGAGGTTTGCGGCAAGGAGTGGCCGGCCAAGAAGCACCTGTGGCAGCATTTGATACGATTCCATCGCAGCGAAGCCGCGGTGACTTGCGGGGTTTGTCTGAAGTTGTGCAAGGATTACGAGGACCTGAGCTTGCACTTGAAGAACATGCACGAGGCTATCTTGTCCTGCGAGGGCAACAACTTCACCTGCAAAACCTGCGGCAGGTACCACAACGCTCGCAGCAAGTTGCTGCTGCACACGAGCATACATATCGGCAAGGACACCGATGGCGACAAGAAGGTGAACGAAGTGGCGTCGAAGGTGGCGGACAACGACGAGGATAATAAGAACCAGGAAgacgaggaggaagaggaggaggacgaagacgaagacgaggTGGCTATCAAGGTGGAGAATATTAAAATGGAGGACGAGCTCAATATCGAAGAGGATATCGAGAAGGAGAGCAACCTCGACGAAGAGGAGAGTCACTTCGACGAAGAGACCTCGACCCACGATTCCTCATCGAACATCGACTCGAGCGAAGAGGAAGGTGtcgaagaggaggaagaggaagaggaagaagaaagggAAGGGGAtgacgaggacgaggaggaggaggaagtcGAGGAAATGGAGGACGAGGAGATGTCGGATATCGAGGATACCAAGAGTGGAATTGGTAAAAGGGAGGATGACTTCGACAAGTTTCTGAGCTCCTCCGAAGGCGAGGACGGGGAGGAGAATGAAaacgaggaagaagaggacgaCGAAGTGGAGAACGAGAGGCACGAAATGAGTATGAGCAAGGAGAACGAGGAGAGAAAGGGAAATTTGAATGAGAATAATGTGGAAAAGATGGAAATGGGGCAAAGCAATCACAGGAAGAACGAGCCCGATGTCGGAAATGAGATGAATTGGAACGAGAGCGAGatgaaagaagaggaaagcGAGGTCGAATCTGCGGAAGATGAGtgcgatgatgatgatgatgatgatgatgatgatgatcagcCTCCGGTGTTGAGTCCGATGATACCCTTCGGAAAGGAGGATGAACATAAGGGAGAAGTCGACGAAGAGGAGTCTTCGAATTTCCTCGCGAGGAATATGCAAGAAATGCAGATGGAAGTGGACAATATGATGAAGACCGAGAATGGAATCGCCTGCGAAGAGGATGACTCGTGCACGGAAGATAATgtggagaagaagaaacggAAGAAAGGAGGTCATCAGAAAGAGAGATCATCAGCGAGGTCTTCGAAGATGCGAAACCTTTCGCATGAAAAGGAAGGATCAGACTCGAGCTCCGAGAAGagcgaaaagaagaaaagtcgGAGCGAGTCGAGAGATTCCAAGTCGAGTATCAAAATGGAAGATGAGGATGCTGTCGAAAGTGTGAGAGACCGAATGGGAAAGTCTCGAGTCGAAGAGGTCATTTTTGGAGCGAAGAGTGACCGGAAGCCAAGGGGAGAGGAGAAGAAACTGGAGGTCGACCGAGCTAATACTACGAATTCCAATGATAATTGTCCTAAAGATGCTCGAGTGTCGAAGAATAACCGAGACCCGGAGAAAGACTCGCAGGTTCGAAGGAACGAGAGGGTTCCGAAGAGTTCGGAAGAGGAGGACGAAGAGAGAAGAGGAGCCGATGCGAACAGATACAAACTGGAAAATAATGATACGAAATCGATGGCAAAGGGTAAAATAAAGGTTCGAGGTGGAATGGGAGAGAGCGAAGAGGATATGGAAGAGTCGAAAGACGAGCTCGTATCGCATGAAACCGAGAATAAATTAGATCGACAACAATTTTTGGATGACGACAGTGAGAACGAGTCGAACAATGATGAAAAGCAGGACTACGACTCCTCCGACAGTGATATCGAGGAGGTTCGAGTAGGGAACGAAGCGGAGGAGCAGGTCGAGGATCACGAGGAAGTTCTACTCGGTCGAGAAAACGAAGAAGATGAGAATGATGAGGAGGAAAATGATGGTGTCGAACAAGCAGGGGAAATCCACACGGTTTTGATGTTGACGAAGGACTCGGATGGAAATGAGATTTTGATCGAACAGAATGTTTTAGGAATGGTCGAGGAAGACGACGAGGAGAATGAATTGTTGTATCAGCACGAAGGCAACTCGTATTTTAATGAGGAGGAAGCAGGGGGCGAGAGACAAGAGGAAAATGGTGGAAACGGTGACGGTGATGATGGAAATGATCGCGAGGATGAGGAAGTGGAAGAAGAATCCGAAGACATTCCTCAAAATAATCATGATAACGAAGTTGAGGAGAGGACTAATAATTAG
Protein Sequence
MDLTICHHRLGKIPGWMCTSIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVAILERRLMMEDASYGRLQNHIASRTSSEIPEDILKGKEIMLPSCLIPEAPVVNPNAALGTPPRLNSDGEACHEIEEILDHSGTDEAENEVDDRKSDEYEMDMETNPSDFLEMPPMVTEDNEESDGGGAGNRQQNQDRSDPTPIRLKDQHQQQQQQQQQQQQQQQPQQNVFQRTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAAAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPIPQEITNNQALQSYSQAKSRQFQCKTCPKIYTSVTELNKHSRLCLGERQQQINRIRNMNILQKGQNDQMNQMMVDTTLSDLSSIDSDEESKDYRTAEAKLAKNPQLTILKQALTKSDVKRDYDDKSRSKHKKLPRIGDGCETEVEKRWYCEMCPQSFLSVEQLKEHEISHDADKPFVCILCKKDFVLKSSLSRHILSSHGVDPSPILDSDKCMKRSVLASTGIPQLQSWNDQMEITRIKDENFTKENIDSPLSPNENPMDTNDDDEDPGRNTENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNTNYYNENFNNSDVNEQQQLSQHQSLPEQLQIQPQIIDFDAEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQMLAPLDPTNNGNGNSSNPGQINRAQYHLFFVCELCGSSHPSKWERWLHVSSAHSEEPSIKCERPDCGKIFATKSLRNDHAQHHQLQGPSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVLKLSQHVRTNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLENLEYQHDSMKNHLEPPENQRFICEMCQEKFTSFQDISNHRKNVHKLFPCDLCCKFYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASREHLAAHILKIHRYESQSNSISNENDYELEEAEENVTPTSHTCDRCKKSFHKRYLLRRHMKGCQNYRKDPSALLTRCRACERIFKDRLSLQKHIENHHSVYKCHLCEDTTIVSKLGIMTHNRIHHMNHPDLTCQVSSCKKLFRTLEDLENHRKDHKYTASPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHKSILTKVNTCRVCGKQYASKWKAYDHTKKCHGKVFKTCKQCLDVFTSDIEILKHYEKVHNVITKDRVATLKHPDRNNAAGTNDRKRKKETYDCEVCPEIFLTESMLSEHYKKMHSDCKRYKRKKHDKKPLENTSASFATTAATTSSSSTSATFVCKNCNKEFSTKTLFWNHLNSCKKRNISTSSSSASASTTMSNQFTPDFNLFEKINLNLQQQFEKSYSKNHHRKDSRKVYDESTNTECACEVCGKEWPAKKHLWQHLIRFHRSEAAVTCGVCLKLCKDYEDLSLHLKNMHEAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHIGKDTDGDKKVNEVASKVADNDEDNKNQEDEEEEEEDEDEDEVAIKVENIKMEDELNIEEDIEKESNLDEEESHFDEETSTHDSSSNIDSSEEEGVEEEEEEEEEEREGDDEDEEEEEVEEMEDEEMSDIEDTKSGIGKREDDFDKFLSSSEGEDGEENENEEEEDDEVENERHEMSMSKENEERKGNLNENNVEKMEMGQSNHRKNEPDVGNEMNWNESEMKEEESEVESAEDECDDDDDDDDDDDQPPVLSPMIPFGKEDEHKGEVDEEESSNFLARNMQEMQMEVDNMMKTENGIACEEDDSCTEDNVEKKKRKKGGHQKERSSARSSKMRNLSHEKEGSDSSSEKSEKKKSRSESRDSKSSIKMEDEDAVESVRDRMGKSRVEEVIFGAKSDRKPRGEEKKLEVDRANTTNSNDNCPKDARVSKNNRDPEKDSQVRRNERVPKSSEEEDEERRGADANRYKLENNDTKSMAKGKIKVRGGMGESEEDMEESKDELVSHETENKLDRQQFLDDDSENESNNDEKQDYDSSDSDIEEVRVGNEAEEQVEDHEEVLLGRENEEDENDEEENDGVEQAGEIHTVLMLTKDSDGNEILIEQNVLGMVEEDDEENELLYQHEGNSYFNEEEAGGERQEENGGNGDGDDGNDREDEEVEEESEDIPQNNHDNEVEERTNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-