Gjac013971.1
Basic Information
- Insect
- Gasteruption jaculator
- Gene Symbol
- -
- Assembly
- GCA_949825005.1
- Location
- OX463766.1:16367373-16371194[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 1.4 10.2 2.5 1 23 350 372 350 372 0.95 2 11 2.2e-05 0.0025 18.8 1.0 1 23 380 403 380 403 0.96 3 11 0.00029 0.033 15.3 4.9 1 23 441 463 441 463 0.98 4 11 3.7e-06 0.00042 21.2 2.2 1 23 516 538 516 538 0.98 5 11 3.5e-05 0.004 18.1 1.1 1 23 543 566 543 566 0.96 6 11 3.4e-05 0.0038 18.2 0.7 1 23 602 624 602 624 0.98 7 11 1e-06 0.00012 23.0 0.9 1 23 634 656 634 656 0.96 8 11 2.9e-06 0.00033 21.5 1.2 1 23 662 684 662 684 0.99 9 11 1.5e-05 0.0017 19.3 0.2 1 23 690 712 690 712 0.98 10 11 0.0045 0.51 11.5 4.2 1 23 718 740 718 740 0.98 11 11 0.00054 0.062 14.4 0.3 1 21 746 766 746 767 0.94
Sequence Information
- Coding Sequence
- atggaagtgTCGTCGAACGTCGAAGAGAATCTCAGTATCGTTTTGAATTTGTCGGAAATTCCGGAGGATTTGTGTCgcatttgtttgaaaaaatgcagCGACAACGAACAATGGCAGCTTTTTCGGAACGGAGAAGACATCGCGAGGAAAATTATGGCCTTCGCTGCCGTCGAGATCAAAGAAGGAGACGGATTGCCTGCACTCGTTTGTTGCCCCTGTCGAGAACTGATAGACACATcctataatttcaaaaatcaagtGGAGACTTCGGACAAAGAGTTACGAAGAATATTAACACCTCCGAGTCTGAAATCCGGTTCGATAGGATTATCGAAATCGATAGATGTGGTCATCACGGAGGCCATAAGGGACGAACTGCACAGAAAAGAAGATGGTGTCGATATTCGGAATCCAGAGAATATGGGGAAATCGACCCTCGAAGAGTCGATGGACAAATTAACCCAGGAGAGCATCGATCATCAAAACGACATCTTCGACATTACCAAAGCTACGATACTGCAGGACGAACAGGAAACGGAACCTATCGAGGTACAGGACTTCGAGGAGTCCATGTCCCGGAAACTGAACGAATACTCGGAAAGCTACGAGGAAGTGAAAGACATCAAGGAGGAGATTTTACCGTACCCTGAAGCTACGGTCACCTGCGACAAGGCCAGTATTTTCGAGGAGTCGAGTAAAATCCAGGGTATCAAAATGGAAATGGGGGTACAAAACCATTGTAATAATTTAGGAAGTGCCGAAATTAGGAAAACCGTGgtggaggaagaggaagacgaagaggaagaggaggaagaccAGGACCAGGATGAAgatgaggaggaagaggaagacgaagacgaggaagaggaggaggaggaggaggacaaTGATaacgacaatgacaatgaagTCGACAATCGCAATGACTTCGAAGTCGAGGATGACAATAATGGGAGGAATAATTTCCAGGACATTCGAGTAAAATCCTTGTCCTCGAGGGAACCCGAGGACGAGGAAGAGAAACCCCTGATCTCCAGGACTCGGAGGCACAGCTGCGAGCACTGCATCAAGACTTTCGCCTCCAAGTTGGCACTGCAGAGGCACTCGGAGGTGCACAAGGGCAAGACGAAGCTACTTTACGTCTGCCACGTGTGCGATAAGCAGTTCTCCACGATAACGAAGCTGAAAAACCACGTACTGGTGGGCCACTCGTCCTTCGGCTCCACCGAAGGATCGACCGAGGAGCCCAAGCTCCCGGGCCACCCCGAGTCGAACACCAGCCCCTCGGAGAGTCCGTCGAAGGGCTCCTCCGACAAAAGGTTCAACTGCAAGTTCTGCGGCAGGAGGTTCACGTACCAGAAGTCCTTCTTCTCGCACGCGAAGACCCACCCCGAGTACAAGGGTGCCTTTTTGAACGGGAGTCCGGAGTCCCTGGGTGCTCCCGGAGAGGAGATACGCCGCAACAGCGAGGATCCTTTGAAGAGGACCGAGAACTCCGAGGACGAGGATCCCAGTCAGCTCTTGGACGACGAATCCATGAACCGGTTCCAGTGCACCCAGTGCGGGAAGCTGTTCGGGACCAAGAGGAACCTGAAACGCCACGTCACCACGCACAGTGGGTTGAAGTTCACCTGTTCCACCTGCGGGAAGGGCTTCTCCAGGGTGGACAAGCTCAAGGAGCACGAGCAGTCCAAGCACAAGGAGGAGATCTTCTCCAACagcgaggacgaggacgaggacacCGAGGACAGGCCCGGCGACGGCTCGGAGCAGAGTCGCAAGAAGGAGAAAAAGAGTCGACCGCACAAGTGCGCGCAGTGCACGAAGGCCTTCGCCCAGGCCCAGTCGCTGGCCAACCACATGGAGAGGCACAAACGGGTGAAGGACACGCAGAAGAGGTTCCTCTGCGAGGTGTGCAGCAAGTGTTTCGCCCAGAGCGGCTCGCTGGTGGCCCACATGAGGACCCACACGGGCGTGAAGCCCTACGTGTGCAACGTCTGCAGCCGGGCCTTCACCAAGAGCACTTACTTGCAGCTGCACCTGCGGACCCACAGCGGCGAGAAGCCGTACATCTGCCAGTACTGCAGCAGGGCGTTCGCGAGGGCCAACACCCTGGCCAGGCACATCACCATGCACACCGGCGAGGCCAAGTACCACTGCCAGGTGTGCATGAAGTCCTTCAGGAGGCTCACGTCCCTCAACGAGCACACGTACACGCACACGGGCCAGAGGCCCTACGCCTGCAAGATCTGCACCAAGAGGTACAACAACGCGGGCTCGCTCTACGCCCACACGAAGAAGTGCAAGGCCCAGCATTTGACGGCGAATATCGCCCTGGCCGCGGCTACGGCCGCAGCCGCTACCGCGACGACGACGGTGGTGGTTCCCGCGGGCGCGTCGGCCACGACGACGACCACGACCACGAGGACGACGGCGAATGTCAACGCAAAtgcaaatgcaattgcaactgcaacgGCGCCGACGAACTTCGCGGTCTCCGTGGACGCCACGACGGGGGTCTGCCAAAACGGGGTGACGTCGGCGCCGGCGTCGGCGTCCGGTGGCATCCCGCAGATGGTGATATACTCCCAAAGAAAGCTGGTGGAAGACGCCACCGTGGGCCAAATCCAGCCGACCCCGCAGTTCATGGTGGCAAATTTGCACAATCAAAAGCAGCCGACGTCGACGAACGTCGCGGTGGCGGCCAGCAACGTCGTCCTCCAGTCCTTTCCCGGCGTCGAGGAGTCCAACGTTTACGCGATCAACGCCAAGCAGTACAAGACCCCGTATTACACCATTTACCCGAACATGTAA
- Protein Sequence
- MEVSSNVEENLSIVLNLSEIPEDLCRICLKKCSDNEQWQLFRNGEDIARKIMAFAAVEIKEGDGLPALVCCPCRELIDTSYNFKNQVETSDKELRRILTPPSLKSGSIGLSKSIDVVITEAIRDELHRKEDGVDIRNPENMGKSTLEESMDKLTQESIDHQNDIFDITKATILQDEQETEPIEVQDFEESMSRKLNEYSESYEEVKDIKEEILPYPEATVTCDKASIFEESSKIQGIKMEMGVQNHCNNLGSAEIRKTVVEEEEDEEEEEEDQDQDEDEEEEEDEDEEEEEEEEDNDNDNDNEVDNRNDFEVEDDNNGRNNFQDIRVKSLSSREPEDEEEKPLISRTRRHSCEHCIKTFASKLALQRHSEVHKGKTKLLYVCHVCDKQFSTITKLKNHVLVGHSSFGSTEGSTEEPKLPGHPESNTSPSESPSKGSSDKRFNCKFCGRRFTYQKSFFSHAKTHPEYKGAFLNGSPESLGAPGEEIRRNSEDPLKRTENSEDEDPSQLLDDESMNRFQCTQCGKLFGTKRNLKRHVTTHSGLKFTCSTCGKGFSRVDKLKEHEQSKHKEEIFSNSEDEDEDTEDRPGDGSEQSRKKEKKSRPHKCAQCTKAFAQAQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQVCMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQHLTANIALAAATAAAATATTTVVVPAGASATTTTTTTRTTANVNANANAIATATAPTNFAVSVDATTGVCQNGVTSAPASASGGIPQMVIYSQRKLVEDATVGQIQPTPQFMVANLHNQKQPTSTNVAVAASNVVLQSFPGVEESNVYAINAKQYKTPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -