Gjac021673.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gasteruption jaculator
Gene Symbol
-
Assembly
GCA_949825005.1
Location
OX463772.1:12275681-12277999[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0005 0.058 14.5 3.9 2 23 241 262 240 262 0.97
2 15 2.6e-05 0.003 18.5 1.9 1 23 270 293 270 293 0.97
3 15 3.1e-05 0.0035 18.3 1.3 2 23 373 394 372 394 0.97
4 15 5.4e-06 0.00062 20.7 2.3 1 23 400 422 400 422 0.98
5 15 5.8e-05 0.0066 17.5 0.4 1 23 428 450 428 450 0.98
6 15 2.6e-07 2.9e-05 24.9 0.9 1 23 467 489 467 489 0.98
7 15 3.8e-07 4.4e-05 24.3 1.0 1 23 495 517 495 517 0.98
8 15 5.7e-06 0.00065 20.6 2.4 1 23 523 545 523 545 0.98
9 15 0.0019 0.22 12.7 0.4 1 23 551 573 551 573 0.99
10 15 6.4e-06 0.00073 20.5 0.3 1 23 579 602 579 602 0.94
11 15 1.7e-05 0.0019 19.1 1.3 1 23 608 630 608 630 0.98
12 15 0.00011 0.012 16.6 4.7 1 23 636 658 636 658 0.98
13 15 8.3e-06 0.00094 20.1 0.4 1 23 664 687 664 687 0.96
14 15 1.2e-05 0.0013 19.7 1.1 1 23 693 715 693 715 0.96
15 15 2.1e-06 0.00024 22.0 4.3 1 23 721 743 721 743 0.99

Sequence Information

Coding Sequence
ATGAAGGAGGACTCgcataaaaattacaagtaCTTGTTGGTGTACGAGGACAAATTATCAACCTATGTAATTCTCAAACCTCTCAAAAGCAATTCGGTTCGAGAAATCGCAGGGAAATTGCTAAAGCTCTTTTTAATAATCGGAGTGCCCCGGGTACTCCAGAGTCAAAATGGACGAAATTTCATCGCTGAGGTTGTAAAAGAGTTACGAAACTTGTGGGGAAATTTGACAATCGTACACGGAAATGTTTTCAGTAATagcgaaaagaaaagggatttCAAGAGTTTGTTGGAATCGTGGAAGGATCAAAATCCATCGAAAACTTGGTACGAGGGCTTGAAGTTCATACAGATCCTGGAAAATACCAggataaaatttcagaatgaGAAATCGCCACAGGAATTGTTGTTCGGGAAGCACGTTCGCCAGAATTTTCAGGAGATCATTGGCGAGACGATAAAAAGGGAGAAGGAGGTTTTCACGGAGGAGGATTTGATGGAACTTTGTAATataaaagaggaaaatggGGAAATCGAGGATAATTTAAACCTGAACGTGTCCAGAAACGAAGAAATTTTGGATCGAGATTTCaacctACGTTTCGAGGCTTCTTCCGATAAATCTTGGTCACCCGAGAGCGAACCGAGGGAATCAAATTGTACCGAACCGCCGAGAAAAACGAGGCAAAGCGCGAGACagaaagaggaagaatttCATTTACGTTGTAAAATTTGTCAGAAGACGTACTTGAAATTAGGGCACTTGAAGAATCACATGAAGACTCacagaaaaattaagaaactaaAATTCGAGTGCAATATTTGCTCGAAATCCTTTCGAACCGAAGAGTCGCAGAAGAATCACATGGAAAAATTTCACGAAGAGAAAAGCTCGGTAGGTTCccagagagagacagaaatcAAAGAGAGGATTTTCCCCAATACGAGAAGTTCGTgtcaaaaagaaggaaagagattTTTCTATGGCGACGAAATAGACTCGATGGAtgcaaataattcattaaatgaGAAATCAAAGACTGAAGATCcgagtttcgaaaaaactCCGACGAAGAGATCGAAACGCTCTTCCAGAGTATCCGAGGAGTCCCTGTTGGAATGTACCTTCTGTAACCAGAAGTTCGACTTTCCCAGTGTCTTGAAACGACACATGAGGTCTCACACCAACGAAAGACCTTACGTTTGTCAAATTTGTAACAAGAGTTTCAAGCAATTGGGGCACTTGAGTCAACACTCGCTGACCCACCTGGACTATCGATCGTTCCAGTGCACGATCTGCGATATCAAGTTCGAGTCGCTGGATCTCCTGAAAGTCCACTCGCAGTCTCACGGAAGTATGGTTTCGTCTTACTACCGATCGAAGGAGATTCACCGACTGTTCGAGTGCGACAATTGCAAGAAAGTGTTTACCACGAAAAGTGTACTCGAAAGGCACATTTTGACTCACACTCACGAGAGACACTTCGAGTGCAGTATTTGTGGCAAACGGTTCAAACAAGCCGGTCATGTGAAATCCCATATGCTTGTTCACACCGGAGAGAGGAAATTCCAATGTTCAATTTGCTCGAAAAGGTTCACTTTATCGAATTCCCTGAAAAAGCACATGTACGTCCACAACGGGGAGAAACCTTACCAATGCGATATTTGTGGCTCGAGGTTCCTGGAGCGAAGGAATTTGAATGGACATTTGATGACTCACACCAACGAGAGACCCTTTTCGTGCAAAATCTGTGGGAAGAAATACACCCTCGCGGATACTTTGAGGAGACACATAAGTGCGGCTCACGAGGATGGAAGGACTTATCAGTGCGAGATTTGTGCCAAGATGTTCAAGCAATTGGCGCACTTGTCGGTGCATAAAAAGGTGCATAACGACGAACGGCCCTTTCAGTGCCACCTTTGCGACAAGAACTTCAAGCACAAGAACGTGCTGAAGTCCCATTTGGCCATTCATGCGAATGTTCGCCCGTTCGAGTGCGATACCTGCAAGGCCACCTTCGTGAGGAAGACCAACTTGCAGACACATATCGCTTCGGCTCACATGAACGAGAGACCTTATGTCTGCAAGATTTGCAACAAAAGGTTCAAGCAAATCAGTCATTTGAATGGGCACGTGGTGGTCCACAGCAATTCGATGCCCTACCAGTGCGAATACTGCGAGCGAAGGTGTAACCGACTGGACAATTTGAAGAAACATATGAGGCTTCATAtgagaaacaaagaaaattaa
Protein Sequence
MKEDSHKNYKYLLVYEDKLSTYVILKPLKSNSVREIAGKLLKLFLIIGVPRVLQSQNGRNFIAEVVKELRNLWGNLTIVHGNVFSNSEKKRDFKSLLESWKDQNPSKTWYEGLKFIQILENTRIKFQNEKSPQELLFGKHVRQNFQEIIGETIKREKEVFTEEDLMELCNIKEENGEIEDNLNLNVSRNEEILDRDFNLRFEASSDKSWSPESEPRESNCTEPPRKTRQSARQKEEEFHLRCKICQKTYLKLGHLKNHMKTHRKIKKLKFECNICSKSFRTEESQKNHMEKFHEEKSSVGSQRETEIKERIFPNTRSSCQKEGKRFFYGDEIDSMDANNSLNEKSKTEDPSFEKTPTKRSKRSSRVSEESLLECTFCNQKFDFPSVLKRHMRSHTNERPYVCQICNKSFKQLGHLSQHSLTHLDYRSFQCTICDIKFESLDLLKVHSQSHGSMVSSYYRSKEIHRLFECDNCKKVFTTKSVLERHILTHTHERHFECSICGKRFKQAGHVKSHMLVHTGERKFQCSICSKRFTLSNSLKKHMYVHNGEKPYQCDICGSRFLERRNLNGHLMTHTNERPFSCKICGKKYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDTCKATFVRKTNLQTHIASAHMNERPYVCKICNKRFKQISHLNGHVVVHSNSMPYQCEYCERRCNRLDNLKKHMRLHMRNKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-