Basic Information

Gene Symbol
JARID2
Assembly
GCA_949825005.1
Location
OX463763.1:3100788-3113108[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.9 2e+04 -3.3 0.3 59 82 192 216 181 217 0.63
2 2 1.4e-22 5.7e-19 68.9 0.0 7 89 1493 1573 1488 1573 0.93

Sequence Information

Coding Sequence
ATGGTGCTGAGTCGGAATGATAAAAGGAAACGCAAGGAAGGAGATCTCGTCGATCTCATGGATCCTTTATCGGAGGCTCCCAAAAGGACGAAAGTGCACGCTCAGAGGAAATTCGCCCAAGGTGCAGCGACGCCAGTGTTCACCACACCCACGCAGACTCCCGttaaagaaaaggagaagcaACAGCCGAATGTCCGACCTGCGGTCATcaaagaattaataacacacaAGAGGCCGAACACAGAGGATTTTTTGACCTTCCTCTGCTTTCGAgGCACTTCGATCTTACCTCCGAGCCTCAACTTCTTCAACACGAACAATCGAAGCCCGAAAGGGGAGGCGAAGCATCACCGGAACTTGAGCAAATCCCTGAACAGCGAACAGCCTTCGAGCAAGAGTCGCACCGGTTCGACCAACTCGAACACGAATTCGAACTCCGCGGAGACGCCGACACCGAAGAATGTCTTGCAACAATCCAAGTCGGAGTCGCAGAAGAATATTGCGAGCAAGAGCAAGTCCTCGCAGCCGACATTGACCACTTCCATCATGAAGAAGAAGCTGTCGAGCAATAGCTTCCAGAAATACAAGAATTCGAGTTCGACCAAGAGCACCTCCAACGCCGTCCACGCCCTGAAGAAAAAGTACCAGGAACAGCGGCTGGCGAAGCAGCGAATCAAGCAAACCTCCTCCACGGCGACACGGGTGGTTTCCGTGATTCGAACGCGGTCCTCGACGATATTGTCGAAGTTGCCCGGGAAGATGGTCCCGCGACCGGTGAAACGAGACGGTTTGCGAAGCGGAGCGCAGCGGAGGATCGGCTCGCATTCGAACAACTCCAAGTTCAGTCCGAGTCGAAGCAGGAAACGAGCGAGGAAATTATCCTCGGAGAAATCGAGTTCCTCCGAGGAAGAGgacgaagaggaagaggaggaggaagacgaggatgacgaggaagaagatgaggaagaagaggaggaagaggaggaagacgaggacgaagacgacgacgacgaggaagaagaggaggagaagCAGCAACAGAAGCGGAAGGTTCCCCCGCAGAAGTGTCCGAAGAAGATGCTGAAACCGGTTCAGAAGAAGATCTGTACGATCGAGAGGAGAGTGACTCGGTCCAGGGCCGTCTTGGTGGACGAGAGGGTTGCGAAAAGGCCTTCGAGGAAGACGAAGGAAGCCGCTGCACTCTACATGGAGATTCTGGGTCGGAAACTAGTCAGTCCCGACCTGGAGAACGATGATATTTTGGGTTATTCGTTCCCGGAGTTGCCAAAGAGGGTCAGCGAGCGCGAGAGTGAGAGGAAAAAGGGAGCCGAGGAAAGCGGGAAGAGGAAAGCGGAGCAAAAGAGGTCGAAGGAGAGCGAAGAGATCGAGAGGAGGAGTAAGTCGAAGGGTAACGAAGAGACCGAGAAGAAGAAAGCGAAGAGCAACGAAGAGACCGATAAGAAGAAGGCGGATGAGAAGAAGTCGAAGGTAGAAGACAAGAGTAAAAAGAAAGACTCGGAGGAGAGCGAGAAGAAGAAACCGAAGGATGCTGAGAAGACGAAGGACAAGAAGACCACGGAGACCGAGTCGGAAAGGCTACGAAAGTCCAAGGAGGCTTCGGAGTCCGACAAGAAAGTTTCAAGGCCGAAGAAAGCTTCGAAGCCGGAGAAGAGGGTTCGAGAGAAGAGGATGGTGGTGAAGAAGTCGCAGAGGCTGAAAACCATCCAGAAGTACTGCGAGAGCGACGACACCGAAGAAGATTTCAGCTCGTCGGCGTCGTCTTACGAGCAACCGAAGAACGTGTCGTCGCAGGCTCAGAAATCCCAGCGAAGCCTTCGGTCGAactcgaaattcgagaaaaccGAAGTCGAGAAGAAACCAGCGGTCCtcaaaaaggaggaaaaaggagCAGGAGGAAGAGCGGAACCTGCGAAGAAACTGCTACGGAGCAAGAAGGTGGCGAAGAGTGGCTCCGATTCCGAGGAGGAGAGTCTCGGAACTTTGTTGAAGCGAATTAAGAAAAAGGACAATTATGAACAATCTTCCAGGACATCCGACGAAGAAGAGTCTTTTCGAGGCTTCTCCCGGAAAGCCATTTCGAAGGTTCTTACTCATATCGAGATTCCCTTGGAAGCggagatcgagaagaagaggaTCGGAAGCGCCGAAGGGAGAAAGACCGTAGTCGAGGGGAAGAAAGTCGATGGAAGCAAGAGTTCGGAGTCGAAGAAGAGTATCGGAGAAGGGAAGAAAGCGACAGTCGAGTCGAAGAAGCCAAATCTGGAGAATAAGAAGACCGCAGCTGGCATCGAGGGGAAGAAGGCAGCTCCAGCGGAGagcaaaaaatttccagatacCAAGAAAAGCTCGGAAGCTCCGAAGAAGGAGGTGAAGAAAGTTCCGGAGACTAAGAAAAGCTGCATCGAGAACAAGGCGAAGAAGTTGACCGCTCTGGAAATCGAGAAATCCTTGGACACCTCGTTCTCGGAGGAGACCAAGAAGAGTTTCGAGGCGAGTAAGGAACCCTCGGAGGACTTTAAGTCCATCAATGATCTGGAGATCGTCGAAAAGGTTACCGATggggaagaggaggaagaggaggaagaggaggagcaGGAAAAGAGGGGTTTCAGCGAAGAGAAGACCTTCGCTCTGCAAGAGACGGAGAAGCTGCAGCCGGAAAACCTGAAATCCCTGGACGAGTTGAAGATCCTGGAGCGGACGGAGATCCTGGAGAAGATCTTGGACCAGGTCGAGGCCAAGAGACTGTTCGAGGAGAAAAAATGTGTTCACGAGAAGAACCTGAATCTCATCGATATACCTCCGACTCACCTGGGTCGGAAGGAGAAGGTGAACATGTCGACGGAGCAGATCGAGAAGTGGTTGAATGAGAGTTCGCTCGCGAAGGAGGAGAGCAAGATCGAGATGGAGAACACGAACTACCTCGAGGAGAAAGCGAACAAGAATTGCTCCCATTTATCGATTTCGACGAAGATCCAGGACCTGTTGCGACCGGTCAATGTGACCTTGTCGAAGCTGAACAAGAGCAAGGATCGGTTCGTGGTTCCGAAGAAGACGACCGTGAAAGTCGTGAAAGCGGAGAAAAAGGCAACAACAACGGCAACGGTGGCGGTGAGCGTGGAGAAAATCGAGACTGTCGTTGAGAAGAAGTTGCCTTCGAAGAAGCTTTTCTCGCCGAAGAGCAAAGAACGGAAGAACTCGGTCCCGAACGTCAACGCCTTCTCCGCCGAAAACGAGAGCTCGGTGTACGCTTTCGAGAGCGACTCGGAAGAGGTCAACACCCCGTTCAGGAGGAAGCGATTAGAGTCCAGTCAAatggaggaggagaagaagaaaggtGGCGAGAGTAACGCGAATTCCAGTTCGAATTCGAACTCCACGAGCTTGATCGAATTGTTACCAAAGAATTTCGCGAATTTGGCGAACGTCCAGGTTTTACCGCTGGATAAGCTCACCACCAACTGGAGCAACGTCAATTGCAGCGCGTCCATTGCCGTGCAAGTGAATTTGGATAATCAGGAGCAGCCGCCGCCCGAGGAGCAGAAAGGCACCGAAATCTCCACTCAAACCGATACGACCGTGGAGACCGACGAGGACAACAACGACAACGGGGGTCAGCTCTTCTACATTCCACTGCAGACCGTCACCAGGAACGGCGCGATGGCACAGGGTCAGCAACTGATCCAGGGAGTCGCGGTCAAACTGGGGACCGAGGGTCCAACCGGACCCAACCAACGGGTTCTCTTGCGAGCGAAGCTGGTGACGAAACCGCCGGTGGCCAGGTGTCTTCCGATCGGAACCGTGCAACCCCTGAGGCCTCCGCAACCCTCGGTCACGACCCCGAAGGAGGACGAACCCGTGTCCACCCCCTCGACTTCCTCGAACACCCCCAGGAGCTTGAACGTGGGGTCCACGACCTCGACGGCTTCGACGACGATGGCTTCCACCTCGGCCAAGGAGATGTTCACGCAGCCGATCTTGAACAAGGGCTTCGTCGGGAACCTGCAGCAGTTCTCCGCCAAGCAGAGCTCCGCGTCGTCGGTCTGCTCCGAGGAGAAGGTCACCAAGTCCCCGAAAGCCTCCAGGGAAAGGAAGACCTCGATCGATTCGAGCAAAAGTGGGAAGAGGACGAGCGTCAAGTCCAAGACGAAGAACACGGACCATAATTACTCGCCGAGCAATAATTTAACGTCGTTTCCGAGCGCCGATTGCAAAATCGACGAGGCGTGTCTGGTAGAAGCCCCCACGTTCCATCCGACCGAGAAGGATTTCCAGGATCCTCTGGAGTACATTGACAAAATCCGCCCGATCGCCGAGAAATTCGGGATCTGCCGTGTAGTCCCACCTGCGAATTTTaagccGGAGTGCAAAGTATCGGACGACATGCGTTTCACGGCGTACAACCAGTACGTGCACCGGATGCTGCACCGCTGGGGCCCGAACGTGAAGGAGGTGATGGCCATTAAGAAGTACCTGGCCACCCAGAGCATCACCCTGACCCACCCACCTTGGATCGGCGGCATGGAGGTGGACCTGCCGCATTTGTACCAGACGGTGCAGAGCCTCGGCGGTTTGAAGGAGGTCatcgagaagaagaagtgGCAGAAGGTCGCGGACGGCATGAAAATCCCGAAATCCGCCCAGGATCGGGTGACGAAACTCGACGACATCTACTGCAAGTACCTGCTGCCGTACGACACCCTGTCGCCGGAGGAACGCGAGAAGCTCTTCGACGAGGTCGAGGCCGAATGGAGAAGGAAGGAGGCGAAGGCCCTGGAAAGGCAAAACGCCCCGTCCTCCTCCAACGACaacgaggacgacgaggaaGAGGACAGCTCCGACGAGATCGAGGAGTGCATCGTCAAGGGGCGCAACATGCCGCTGAACGCCTTCTACCGAATCGCCAGGAACACCCAGAGGATGTGGTTTGGCGAGAACCAGTGCTCGGGTGGCAACGAGACCGACGGTGCGTCCGCCAGCGAGGTGGAAGCCGCTTTCTGGAAGCACGTGGCCGAACGAAAGCGTCACGTATGCGTCCACGCCGCCAGCATCGACTCCGGGGGCAGAGGCTTCGGATTCTCCATCGCCAAGAACAGCCCCTTCGCTAGGCACCCCTGGAACCTGAAGGTTCTTACCAACAACACTGGGTCCGTTTTACGAGCGTTGGGTCCTCTGATGGGAGTGACCGTCCCGACTTTGCACGTGGGCATGCTCTTCAGCGCGTGCTGCTGGTACCGAGACCCGCACGGGCTGCCGTGGATCGAGTACCTGCACACGGGAGCGAAGAAGATCTGGTACGGGATCCCCGACGAGCACAACAACAATTTCCGAGACGCCCTGTCTAAGATGGTACCGAGGTACTGCAAGAACAAAACGATCTGGTTGCCTTCGGACACGGCAATGGTGCCACCGGAGATGCTGGTGAGCAACGGGGTGCCCCTCTGTCATACCGTCCAAGAACCAGGACAGTTCATCGTTGTGTTCCCGAAAGCCTTCACTTCCAGCATTTGTACCGGTTACGTCGTCTCCGAGAGCGTCTATTTCGCGCAGAGCACCTGGCTGGAAACGGCCGAGCAGGTGTTCAAGgATATTCAAGATAGCTGCGAACCTTCTatattttcattcgaaaaacttttatttaacatCATTAACGATTCTCGTTCCCACATTGAAGTACTTAAACAGATTTTACCGAGTGTTCTAAAAATCCGCGAACGAGAATTGGATTATCGGAAACAATTGGAGAACATCGGCTTAACCAACACCGAGAAACTGCCATTACCCGATAACGGACGAGGGAAGAAAGGTAGAAAAGTCAAAGAGGATGATGGAGATTACGAGTGTGAAACTTGTAGAGCGAATCTATTCGTTTCCTTAGTCAGTAATTCACAAGACGAGAGCGTCTACTGTTTGCCACATgctttacaattattaattaggaaGAATCATTTACTTAAGAGCTGTACGTTGATGTACACATATAGCGAGgatGAATTGGACGATTTAATACACAAGCTGGAAGATAGAATCGAAGCCAAATCTAAGAAGACTAATCAAACTAATAGGCAAATTAggtaa
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLSEAPKRTKVHAQRKFAQGAATPVFTTPTQTPVKEKEKQQPNVRPAVIKELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNTNNRSPKGEAKHHRNLSKSLNSEQPSSKSRTGSTNSNTNSNSAETPTPKNVLQQSKSESQKNIASKSKSSQPTLTTSIMKKKLSSNSFQKYKNSSSTKSTSNAVHALKKKYQEQRLAKQRIKQTSSTATRVVSVIRTRSSTILSKLPGKMVPRPVKRDGLRSGAQRRIGSHSNNSKFSPSRSRKRARKLSSEKSSSSEEEDEEEEEEEDEDDEEEDEEEEEEEEEDEDEDDDDEEEEEEKQQQKRKVPPQKCPKKMLKPVQKKICTIERRVTRSRAVLVDERVAKRPSRKTKEAAALYMEILGRKLVSPDLENDDILGYSFPELPKRVSERESERKKGAEESGKRKAEQKRSKESEEIERRSKSKGNEETEKKKAKSNEETDKKKADEKKSKVEDKSKKKDSEESEKKKPKDAEKTKDKKTTETESERLRKSKEASESDKKVSRPKKASKPEKRVREKRMVVKKSQRLKTIQKYCESDDTEEDFSSSASSYEQPKNVSSQAQKSQRSLRSNSKFEKTEVEKKPAVLKKEEKGAGGRAEPAKKLLRSKKVAKSGSDSEEESLGTLLKRIKKKDNYEQSSRTSDEEESFRGFSRKAISKVLTHIEIPLEAEIEKKRIGSAEGRKTVVEGKKVDGSKSSESKKSIGEGKKATVESKKPNLENKKTAAGIEGKKAAPAESKKFPDTKKSSEAPKKEVKKVPETKKSCIENKAKKLTALEIEKSLDTSFSEETKKSFEASKEPSEDFKSINDLEIVEKVTDGEEEEEEEEEEQEKRGFSEEKTFALQETEKLQPENLKSLDELKILERTEILEKILDQVEAKRLFEEKKCVHEKNLNLIDIPPTHLGRKEKVNMSTEQIEKWLNESSLAKEESKIEMENTNYLEEKANKNCSHLSISTKIQDLLRPVNVTLSKLNKSKDRFVVPKKTTVKVVKAEKKATTTATVAVSVEKIETVVEKKLPSKKLFSPKSKERKNSVPNVNAFSAENESSVYAFESDSEEVNTPFRRKRLESSQMEEEKKKGGESNANSSSNSNSTSLIELLPKNFANLANVQVLPLDKLTTNWSNVNCSASIAVQVNLDNQEQPPPEEQKGTEISTQTDTTVETDEDNNDNGGQLFYIPLQTVTRNGAMAQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPVARCLPIGTVQPLRPPQPSVTTPKEDEPVSTPSTSSNTPRSLNVGSTTSTASTTMASTSAKEMFTQPILNKGFVGNLQQFSAKQSSASSVCSEEKVTKSPKASRERKTSIDSSKSGKRTSVKSKTKNTDHNYSPSNNLTSFPSADCKIDEACLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPANFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEVMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEEREKLFDEVEAEWRRKEAKALERQNAPSSSNDNEDDEEEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQCSGGNETDGASASEVEAAFWKHVAERKRHVCVHAASIDSGGRGFGFSIAKNSPFARHPWNLKVLTNNTGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFRDALSKMVPRYCKNKTIWLPSDTAMVPPEMLVSNGVPLCHTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQSTWLETAEQVFKDIQDSCEPSIFSFEKLLFNIINDSRSHIEVLKQILPSVLKIRERELDYRKQLENIGLTNTEKLPLPDNGRGKKGRKVKEDDGDYECETCRANLFVSLVSNSQDESVYCLPHALQLLIRKNHLLKSCTLMYTYSEDELDDLIHKLEDRIEAKSKKTNQTNRQIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-