Gpyr007423.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:5061461-5081953[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.88 51 4.8 0.5 1 23 228 250 228 250 0.88 2 13 1 61 4.6 3.2 1 23 340 363 340 363 0.96 3 13 2.4 1.4e+02 3.4 1.9 2 21 401 420 400 421 0.92 4 13 2.5 1.5e+02 3.4 1.1 1 19 830 847 830 850 0.75 5 13 0.042 2.4 9.0 1.9 1 23 861 883 861 883 0.96 6 13 0.012 0.71 10.7 0.2 2 23 889 910 888 910 0.97 7 13 0.008 0.47 11.2 0.4 2 23 1015 1036 1014 1036 0.93 8 13 2.4 1.4e+02 3.5 5.0 1 23 1051 1073 1051 1073 0.98 9 13 8.4e-07 4.9e-05 23.8 2.3 1 23 1079 1101 1079 1101 0.99 10 13 0.0015 0.088 13.5 0.5 3 23 1108 1128 1106 1128 0.95 11 13 0.17 9.7 7.1 1.0 2 23 1135 1157 1134 1157 0.90 12 13 0.0018 0.1 13.3 0.4 3 23 1194 1215 1193 1215 0.97 13 13 0.012 0.72 10.6 1.2 2 23 1235 1257 1235 1257 0.95
Sequence Information
- Coding Sequence
- ATGACTGAAAGCAGGAAACGAAGCAGAAAGTCAAAATTGGAAATTCGAGATGATGATTGTGATTATGAGATAGTGAGTGAAACCTATGACGAAACGACAGCTCCACCGAAATTGCAGAAACTCGAACCTAAAATTGAATTCACTCGAGTCCCTCTGCTGTTTGACCATGATTACTGCAAGCCCGGGTATCAAGACTTTGCTTCTCCATACTACCTTGTTAGAGGCTTGAGTGGCAAAGCTGCGGTCAAGCAAGCTGCCAGCAACATGGAAGACTCCACTACCATGAAGTTCGCTCATGATGCCGTTGAAGATGGAACCTTAACTAATACCGAAGAAAACACTCTACACAACTCGGAGCTTACTACAAAAGCTGTGTCAAAAACAAATCGTCGGTTAGTAAAGAAGCAACTTCGGATCCGGAGAAAGAGTACAAACAAAATTCAAAGTATGAAAATGTTGAAATACAACCCGGAGAGACTATTCGATGTTTCTGCTGAGATATCATCAAGATCCAGTAACCCCGCAGACAAGGTTCTGGACATCGAGATGAGGAATTTATGGGGGAATATATTGCAGACTCCGGATACAATCAATGCGCATGAATCGATGGTGCAAATGGCCTTAAACTCTTGGCAGGTGTGGGTGTATGCCAGTAAAGGGACCCGAGACTGCCCCCTGTTCTATCAGTGTCACATCTGCGATCTAGCGTGGTGGAGACTGCAACAGTTCAGGGAACACTTGCAAATCCACGAGATTAGAACAATGAAGGTGGTTTTGAAAGAAAATTTGCACCAGTGTATGCTTGTGGCAAGCTTTAAAGCAGTCAGTATGATGAAGTTTATAGAAATAGAAGAGGATTGCTGGAGATGTGGCAATGATGTGAACTTCCACAAGATTACGAATAGTGTGTATAAATGCGCGCGATGTTTGCATCCCATGCCCAGTTGCCAGGCTTGGAGTGAGCATGATGCTATCTGCATGTACTCTAACGAAAACGACTTAAAGAAAGATATCAAGCACCAGTGCACAGTTTGCAAACGGTTTATGGATTCTGAAGAAAAACTACATGAGCACATGATGTTGTCTCACATGGTTCGGTCCGATCAACCCGTTATGGTCTTATTCAAGGAATGCACTCACTGTGACGGCAAATACTTCACCTACAGCGCTCACAACTGTCCTAAAAGTGCAAAGAATTCATCCTGCGAGCATTGCTGTAGGAAATTTGCAACAAAATCCCTTGCGTTGTCACATATTCTGTCTCAGTACAACCGGCCGTTGCTCTGTAGGTTTTGTGGCAAGCAGATCAACACAAAGTGTCAGGAAATGGAGCATATAGCGGCGAAGCATTCAAACAACTACAAACTAGCTTACCGATGTACTATTTGCTCGAACCAGAACATACTGTATATTGATGAGGATTCTGTTCGAAAGCACAAGATCATCTGTCATAATAAAAAAATCGATAGACGTAGATGCTTCTATGAATTGATGCTGGTCCCGAAAATTTGCTTGGAAACAGATGGCATGGAAGTACTCATCCAATCTGATGTGGATTTGACTGAAACTGAACAATCGTCATTGCCTGTGAAAAAAACTAAAACTGTCAAAGATATTAAGGCTGTCGCGCGTGACACTACCAGTAAGCAAACATCTCAACAGTTTCCACACATACTGACAGTTGACGTCAATGTGACAGTCGATGAGGTCGATATTAAAAAAGAACCCATAGAATACGGTGAAAATGGGGAAGTGGACTACGAAGAAATGCTTTTTAATATGTTTAGGCAAGACAAGCCACAACAAAGTACTGAAACGGGACAAGATAAGCCACGACAGAGTAAAGAATTTGACCAAGATAAGCTACGACAGAGTAAAGAAAAGAGACAAGTTAATCCACGGCAGTATAAAATAGCAGGACAAGACAAGCCACGTCAGAGTAAAAAAACAGAACAAGACAAGCCACGACAGAGTAAAGAATTTGACCAAGATAAGCAACAAAAGAGTAAAAAAACTCAATCTCCTGACAAAATGGCCGCAACCATGACAGAAGAGTTTGACTTTAAAGTGATGATAAAAACTGAACCGGTCGATGACATTGATATAGTTGAACACCCAGTAGAAGTCATTCAAATTAAATCAGAACCGATCGATGAATCAGAAGAATACTTTAAGTATCTATGCCAGAGTTCCATAGAACAAAATCAAATGGACCAAACTGAGGATCCGGAAACTTTAACAGTGAAAGTGGAACCGGACATCAATATAGATGAAATGCACCCCGAAGATATCATCATCAAAAATGAAATTGATAGCAGTCTTGATAATATATCACCGGAACCAACACCATTCGACAAACTATTCGATTTCAGTCACTTAAACTCAAGCGCTGCCAGCATGAATTTGATACCGGATGAAGTTTTAAACCCGGATGAGAGTTTTATAGAAGTTACAAACCCCAGCGGGATGTATAAAAGGAAAAAGGTTTATGCTTGTCATAAGTGTGGATATACAGCGGAACACAAGCAATACAAGGTTCATATAACATCTAATTGCTCCGTCTCACCAGGCGTAGAGAGTCATCCATGCACTAAATGCGGTTTAAAATTCATTATGTTTAGTAATTATGTGTTACATTTCGATACGCATGGATATGAAGCGATGACTTGTCCGCAATGCAGAGAGCCCTTCGAGTCGTTAGTGAAGCTTTTATCGCATGTTCAGAAGCATATAAAGGGCAGTTTCGTTGGATTGCATCTGCTGAATAAAGGTGGTGAAGAATCTACTAAATCAAAGCAACAAGTTAAATGTCAACAATGTCGCGAAGTGTTGAATAAGAATAAAATGTTTATACATTGGGAAAACCATTTAGAACTTAAAAAGTCCCTTTCAAAACCAGCGCCGCCTGTGGAGGAGACAAGTCATGAAGAACCCGAATTAGTAGTGGACTGCGAGCGTGTCACCATGAACAACAAGAAACTAGACAAAATGGCGCTGAAGATCGCTATAGAGCACTTACAGTCTTCGACTATGAACGACAAGGAATGCGTGGTTTGCTACCGCGCGTTCAATCGCCGGTACGACGTCAAACGACATCTAGTAGAACATCTACTGATGGACGCACACATGAACAAAGCTAAACACAAATCGTTCCGTTGTCAAATATGCTTCGAGGACTTCCACACGACAGACAAGTACAAGTTCCACATGCGCGAGCATGCATCTATGCCGATATTTAAATGTGAACTGTGTAATAAGGCTTTCAGTGATTCAAGCAACTTTGCAAAGCATAAGAAGACTCACAACGTGCGTGTAATGATTTGCGACATCTGTCGGAAGAAGTTCCATTCTCGTGCAGCTCTCGTCAAACACATAGCGGAGCACAGCAGCGCATTGGAGACGCAATGCGCGTTTTGCGACGCGAAGTTCGTCGACAAACTAACGTACAAACGACACAAGTACCAAGCTCATACTAAACACAAATTCAAGTGTATACTGTGCGATCTTAGCTTCACGTGTTTACAACAGAAGTGGGACCATGATTGGGAGGTGCACAAGGAGAGGAAACAGAATGCAGATTGCCCGATATGTTTGAAGTCGTTCCGCAAACTGCAGGATGTTAGAACTCACGCGAGAACCGAGCACGCGGCCGACCTGGTCACCTTCAAGTCACCGCCACAGgtacGCAGCCGTAGGACTGCGGAGTGCCCCGCCTGCCACACCATGTTCGTCAAACTACAGGACTTGAGAGCGCACGTGAGACATGTTCACCGTTCCGACATACGCATTGTTAACCGAAACCATAGACGGTACGAAGTCAAAATAATACCAGACTAG
- Protein Sequence
- MTESRKRSRKSKLEIRDDDCDYEIVSETYDETTAPPKLQKLEPKIEFTRVPLLFDHDYCKPGYQDFASPYYLVRGLSGKAAVKQAASNMEDSTTMKFAHDAVEDGTLTNTEENTLHNSELTTKAVSKTNRRLVKKQLRIRRKSTNKIQSMKMLKYNPERLFDVSAEISSRSSNPADKVLDIEMRNLWGNILQTPDTINAHESMVQMALNSWQVWVYASKGTRDCPLFYQCHICDLAWWRLQQFREHLQIHEIRTMKVVLKENLHQCMLVASFKAVSMMKFIEIEEDCWRCGNDVNFHKITNSVYKCARCLHPMPSCQAWSEHDAICMYSNENDLKKDIKHQCTVCKRFMDSEEKLHEHMMLSHMVRSDQPVMVLFKECTHCDGKYFTYSAHNCPKSAKNSSCEHCCRKFATKSLALSHILSQYNRPLLCRFCGKQINTKCQEMEHIAAKHSNNYKLAYRCTICSNQNILYIDEDSVRKHKIICHNKKIDRRRCFYELMLVPKICLETDGMEVLIQSDVDLTETEQSSLPVKKTKTVKDIKAVARDTTSKQTSQQFPHILTVDVNVTVDEVDIKKEPIEYGENGEVDYEEMLFNMFRQDKPQQSTETGQDKPRQSKEFDQDKLRQSKEKRQVNPRQYKIAGQDKPRQSKKTEQDKPRQSKEFDQDKQQKSKKTQSPDKMAATMTEEFDFKVMIKTEPVDDIDIVEHPVEVIQIKSEPIDESEEYFKYLCQSSIEQNQMDQTEDPETLTVKVEPDINIDEMHPEDIIIKNEIDSSLDNISPEPTPFDKLFDFSHLNSSAASMNLIPDEVLNPDESFIEVTNPSGMYKRKKVYACHKCGYTAEHKQYKVHITSNCSVSPGVESHPCTKCGLKFIMFSNYVLHFDTHGYEAMTCPQCREPFESLVKLLSHVQKHIKGSFVGLHLLNKGGEESTKSKQQVKCQQCREVLNKNKMFIHWENHLELKKSLSKPAPPVEETSHEEPELVVDCERVTMNNKKLDKMALKIAIEHLQSSTMNDKECVVCYRAFNRRYDVKRHLVEHLLMDAHMNKAKHKSFRCQICFEDFHTTDKYKFHMREHASMPIFKCELCNKAFSDSSNFAKHKKTHNVRVMICDICRKKFHSRAALVKHIAEHSSALETQCAFCDAKFVDKLTYKRHKYQAHTKHKFKCILCDLSFTCLQQKWDHDWEVHKERKQNADCPICLKSFRKLQDVRTHARTEHAADLVTFKSPPQVRSRRTAECPACHTMFVKLQDLRAHVRHVHRSDIRIVNRNHRRYEVKIIPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -