Gpyr007593.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:7023006-7040763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.053 3.1 8.7 2.7 1 23 471 493 471 493 0.97 2 24 0.44 25 5.8 0.4 1 23 500 523 500 523 0.90 3 24 0.0045 0.26 12.0 1.2 1 23 554 576 554 576 0.98 4 24 3.3 1.9e+02 3.0 0.2 2 23 584 606 583 606 0.95 5 24 1 59 4.6 0.0 2 23 619 641 618 641 0.85 6 24 0.0064 0.37 11.5 0.6 1 20 648 667 648 672 0.94 7 24 3.2 1.9e+02 3.0 0.2 3 10 748 755 747 758 0.93 8 24 3.2 1.9e+02 3.0 0.2 3 10 776 783 775 786 0.93 9 24 3.2 1.9e+02 3.0 0.2 3 10 804 811 803 814 0.93 10 24 3.2 1.9e+02 3.0 0.2 3 10 832 839 831 842 0.93 11 24 3.2 1.9e+02 3.0 0.2 3 10 860 867 859 870 0.93 12 24 3.2 1.9e+02 3.0 0.2 3 10 888 895 887 898 0.93 13 24 3.2 1.9e+02 3.0 0.2 3 10 916 923 915 926 0.93 14 24 3.2 1.9e+02 3.0 0.2 3 10 944 951 943 954 0.93 15 24 3.2 1.9e+02 3.0 0.2 3 10 972 979 971 982 0.93 16 24 3.2 1.9e+02 3.0 0.2 3 10 1000 1007 999 1010 0.93 17 24 3.2 1.9e+02 3.0 0.2 3 10 1028 1035 1027 1038 0.93 18 24 3.2 1.9e+02 3.0 0.2 3 10 1056 1063 1055 1066 0.93 19 24 3.2 1.9e+02 3.0 0.2 3 10 1084 1091 1083 1094 0.93 20 24 3.2 1.9e+02 3.0 0.2 3 10 1112 1119 1111 1122 0.93 21 24 0.006 0.35 11.6 0.1 3 23 1140 1160 1139 1160 0.98 22 24 0.2 12 6.8 0.5 1 23 1166 1188 1166 1188 0.94 23 24 0.058 3.4 8.5 13.1 1 23 1193 1215 1193 1215 0.97 24 24 0.0061 0.36 11.6 1.1 1 23 1221 1244 1221 1245 0.96
Sequence Information
- Coding Sequence
- ATGTCGTCTAAAACCAAAGTAAAAGTGTGTCGGATATGTTTGCGATCCGATGTTTGCGCAAAGGACGTTGACTCTTCTATCAACGATTTTTACGACGAACTATGTGAATATGATACATATGAAAACCAAAGCTTAAAGTACTGCAGGATGTGTGAGTACCAGCTTCGGAAGTGCTTTACGTTCAAGCAGAGGTGTCTACGAGCCAATGCTGTGCTCAAGGCCTGGCGAAAGAAAAAACTCACGGCGACCATCTGCACACCTTTGCTCCCTGACGGTCGACGACTTCGGGGTCGGCCGAGAAAGCGTTGGCGGGACGATCTAGACGCCTTCGAAGGGAGATGGTGGGAGGAGGTTTGGGACAGGGGAGTATTGGAAGTCTTTGAGGGAGACCTTTGCTCAGCAGTGGGGCAGAGGATATTTCCCAAAAACCTCCATGTTCTCCTACCTCTTTCACCGCTCAATATCTGTTCATCTTCCGCTCGTCACAAAGAATCTCACTACAAGTACACAGATCACGGACCGATGCCTGATGATGTGGACAAGGAGACTGTAGAATCAGTGTTGGGGCATACCCTTCTTGAGAACCAGAGCAATGATTCTAATGATGGCCAAGAAGATATCCCACTTAGTAACATACAGGTAACCAGCCTAGATGTAGATTTAAAAGAATTAAATATTGCTTTAAAAGAAGAAAATGATGTTTCTTCTGATGCAGATGGCTTCGACAGCGATGATATTGATAGTGAAATCGAAGACGCTATGGATAGGTACATAAAAACAGAAATAAAAAAACCAAACACCCGAGCCAAAAGCAAAACAAAATCAGAAAAATCAAAATCATTACATAAAGAGAAAAAACATGAATCGAAATTGAATAAAAAAATAGAAAAACAGAAAAAAGTTAAAACTGAAATTGAATTCGCTTACGTTGATGGCACCACTGACGAAAATACTGAAACGGGTACAGAAATGGCAATTACGGAAACGGGCATTTCAGGAACAGAAATGGGCATTGTAGATACAGAATTGGGCATTGATAACACAGAAATTTGCAATGATATAGACGACCAATCACCGCAAGCTAACAAAAAGTACATAAATATAAAGCAGAAAATCATGGAACTATTTGACAAAGGAGAAATACAGGATATTGGTGATAATACGAAAATGACAAAGGAAACATTTTTGAAAATCTATGATAATTTTTTACTGTCTGATATGAGGATGTTATCACTAAAGAAAGATTCACAAGGCCAGTATCACAAATTAAAGAAAGCTCTTTTGCATTTACTCAAGAAATATAATCCAGATTATGAAACTGTATTTGATATTGAATATTTGGACACTGAAGAGAAAAAATTGAATGAGTTTACCCGACGCAAAGATAGTAAGAGCTATGTGAACGCCACATACAAATGCGAGCTGTGCTACCGGGGCTTCGAGAAGAACACGCAGTTTCAGTACCACAATAAATGGCATACGGCCGCGGCCGGTGAGTTTCTGTGCGGTATTTGCGGAATGCGGTTCCAATCTCTCAAAACTCGCGCCAGTCATCGAGCTTCCAGTCATTCAGCCGTCTACTCCTGCAAGATGTGTCCTCTCATCACTTACCACTATCCAGTTATGTTGAATCACTACGAGCAACACAAAGGCGTGGAGTACTCGTGCCCAACATGTCTCAGCGTTTTCGAAAATAAGACGACGTTTATGAATCACCAGCGCGACCACAATGCAGATAAGAAGAAATCCACGTGTGCCTCGTGCGCCATGACCTTCATATCCGACGTGGGCCTGATGCTGCATAGGAAATCCAAACATACGGATGAAGTCGCAGTGAACCCCGGGCCGCACTCGACGTGTCAGGAATGCAACATCGTGTTCGACACCGGAGAAGTGTATCTCAAACACGTGGCGCTCGCGCATACTAAGAAAGTGGAATCCTACCGATGTGCATACTGTCACATTCGATTCGGAACACTTGAAGAGCTCCGAACGCATAAGGTTGAACAAGGTCACCAAAGGGCATCGAAGAAGTACGCACAAAGGTCGCAGAGGTCGAATGACCCTAATCCGGTCAAGAAGATCAAGATAAACACACCGGATAAGCCATTTGTTAAGTGTGAATTGTGTCCGGCGATGGTGTCGACTGCGTTCACGTCGTGCATGTACAAGCACTTCCTGAAGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCTCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGAGCACCCCGACATCCCCTACTCCTCCGTGTACTCGCAGACCGCGCGCCGCCTGCTCTGCGACCTCTGCGGGAAGACATTCATGGATCCCGCGTTCTTCGCTGACCACGCGAACATGCACTCTGGGCTGAAGCCGTACCTGTGCGCGTCGTGCCCCGCGCGCTTCGCGTCGCGCCGCCACCTCGGGCTGCACGCGCAGCGGCACGGCCCCGCGCGCCACCACTGCACGCACTGCCACAAGCGGTTCCACAGCGCCGCCAACCTCTACAACCACACCAAGACACACATCGGCGACCGTCGGTTCAAGTGCGAGATTTGCTCGAAAGGGTTCCTGCACGCCGCCACGCTCAACGAGCACGTGCGCGGCGTGCACCACCACATCCGCAAACAGAAGCAGCCGCGGGACAGGAAGAACTCCTACTGA
- Protein Sequence
- MSSKTKVKVCRICLRSDVCAKDVDSSINDFYDELCEYDTYENQSLKYCRMCEYQLRKCFTFKQRCLRANAVLKAWRKKKLTATICTPLLPDGRRLRGRPRKRWRDDLDAFEGRWWEEVWDRGVLEVFEGDLCSAVGQRIFPKNLHVLLPLSPLNICSSSARHKESHYKYTDHGPMPDDVDKETVESVLGHTLLENQSNDSNDGQEDIPLSNIQVTSLDVDLKELNIALKEENDVSSDADGFDSDDIDSEIEDAMDRYIKTEIKKPNTRAKSKTKSEKSKSLHKEKKHESKLNKKIEKQKKVKTEIEFAYVDGTTDENTETGTEMAITETGISGTEMGIVDTELGIDNTEICNDIDDQSPQANKKYINIKQKIMELFDKGEIQDIGDNTKMTKETFLKIYDNFLLSDMRMLSLKKDSQGQYHKLKKALLHLLKKYNPDYETVFDIEYLDTEEKKLNEFTRRKDSKSYVNATYKCELCYRGFEKNTQFQYHNKWHTAAAGEFLCGICGMRFQSLKTRASHRASSHSAVYSCKMCPLITYHYPVMLNHYEQHKGVEYSCPTCLSVFENKTTFMNHQRDHNADKKKSTCASCAMTFISDVGLMLHRKSKHTDEVAVNPGPHSTCQECNIVFDTGEVYLKHVALAHTKKVESYRCAYCHIRFGTLEELRTHKVEQGHQRASKKYAQRSQRSNDPNPVKKIKINTPDKPFVKCELCPAMVSTAFTSCMYKHFLKEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHLDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMDPAFFADHANMHSGLKPYLCASCPARFASRRHLGLHAQRHGPARHHCTHCHKRFHSAANLYNHTKTHIGDRRFKCEICSKGFLHAATLNEHVRGVHHHIRKQKQPRDRKNSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -