Gpyr003493.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401879.1:3134670-3140946[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5 2.9e+02 2.4 4.6 2 23 83 104 82 104 0.94 2 20 0.0095 0.55 11.0 0.6 1 23 110 133 110 133 0.95 3 20 0.0026 0.15 12.7 2.6 1 23 146 168 146 168 0.99 4 20 0.051 2.9 8.7 8.8 1 23 174 196 174 196 0.98 5 20 0.028 1.6 9.5 1.1 1 23 204 227 204 227 0.96 6 20 3.3 1.9e+02 3.0 1.8 2 21 236 255 235 256 0.91 7 20 4.2 2.4e+02 2.7 4.7 2 23 264 285 263 285 0.97 8 20 0.041 2.4 9.0 0.7 2 23 445 466 444 466 0.95 9 20 0.0024 0.14 12.9 0.8 2 23 473 495 472 495 0.92 10 20 0.062 3.6 8.4 6.5 1 23 506 528 506 528 0.99 11 20 0.0012 0.07 13.8 3.8 1 23 534 556 534 556 0.99 12 20 0.02 1.2 10.0 1.7 1 23 578 601 578 601 0.96 13 20 2 1.2e+02 3.7 3.4 2 23 610 632 609 632 0.96 14 20 1.4 82 4.2 3.8 2 23 638 659 637 659 0.94 15 20 0.009 0.53 11.1 5.0 1 23 783 805 783 806 0.96 16 20 0.42 24 5.8 2.1 1 20 813 832 813 834 0.91 17 20 0.23 13 6.7 1.8 2 23 842 863 841 863 0.94 18 20 2.3 1.3e+02 3.5 4.1 1 23 866 889 866 889 0.93 19 20 1.4 81 4.2 2.3 2 23 895 916 894 916 0.86 20 20 0.0016 0.093 13.4 3.3 1 23 922 945 922 945 0.97
Sequence Information
- Coding Sequence
- ATGTCAGGAGATGAATCTGGAGAACAATCATCATCAACCCAAAAAAATCCCAATTCTTTAATACAAGACAACTTGGGAATTGAAGAAGACAATCATAACTCAAATCTATTTACTAGTGTGTGGGTCAAGATAGAGATAAATGATGATGATGATGATGAGACTACAGTTCAGATAACAGAAAAAGAATTAAAGAAAAATGATAAAAAGAGGGGACCATACAAAAAGTGCGATAACTTGCAAGATCTCAATTGTGAACAATGTGATTACAAAACGAAACACAAAAACTGTTTAGCCTTTCACATTTTAAGTCACACGAATTCCAAACCTTTCATTTGCACCCAATGTGACTACAAAACTATGTACCCCGTATCGCTTAAACGTCATGTTTCTGTAAAACATGGAGATTTAGATCTCATAAAACCAGGACTACAGACTTACAAATGTAGCGACTGCTCATACGAAACCCAATTTAAATGGAATTTAAGCTCGCATCAGAGGAAACATGACACATCGAAGCAACATAAATGCCCTCATTGCAGTTATTCTACAGTTTATAAGCATAGCTTTGTAAAACACAGCCGGACACATAAAAAACCTGAAGAGTTTACTTATTACTGCGATAAATGTCCCTTCGCCACCAAATACGAAGGACACATAACCAGGCACTTGGCTAAAATACATTTTGTGGTATCTGAAAAGGCAAGCAAATGCGAGCACTGCTCTTTTTCAACTAAAACTGGATGGAGATTGAATGTCCACAAAAAACGAAGTCGCCAAGATAATCCCGTGAAGTGTGCACATTGTGAGTACCAGACTATCTATCGGTGTGCTTTTAAACAGCATAAACTAACTCATGTTGGAGGAAATCGAAATGACCAGCAATGGTTAGACTCTCTCTTTACAACCGATACCAACTTACATAGTATACAAAACACACAAAACCCAAGAGAAGAACAAGCATTGGAGATTATGAAAATGTGCGAAATCCGATCTAAGATAGAGATTGATGCAGGCACCAACCTCAACGAAAGTACAAAGATTTTCGACGAACTCAAAAGCAAATTGAATAATGATCCTACTTATTACACCTTGAACTACAATAATAGCAATAATATGTCTGATACTCAGCCTGAGGATCAATATATTGATCCCCATTACGATATGGACGAGAACAGTGTTACTGAAAACTACTTTGCTAGTGTTTATGTAAAAGTTGAAGTCAATGAGGATTATGAAGAAGAAAATGAAATGCCAACTGGAAATGAACGATTCATGAACTTACACCAAAAGAAAAAACCCAAGAAACCATATAAACGCATTCTAAAGGATCTGAGCTGTGACCAATGTGATTACAAAACTCCCTACAAGAACTGCCTGGAAATCCATATCCTAGGCCACTCCGATGCTAAGCCTCTGACCTGCAACCTCTGTGACTACAAAACCAGATTCCCTGCATCTCTAAAACGCCATATTATCTTCAAACATGAAGATCCAGGTACCAAAGACCTACCAACTTATAAATGTAACATGTGCTCGTACCAAACCTACATAAAATGTAATTTGAAATCACATCAAAGGAAACATGATCTCTCTAAGCAGTTTAAATGCCCTGAATGCAGCTATTCTACCTCATACAAGCATAACATCGTAAAACACAGTCGGACACACAACAAAAATGAAAATAACCAAACCGTAATTAATAAAGTCCACAAACCTAAAGAAGATGCGACTTACTATTGTGACAAATGTCCATTTACTACCAAGTATGAAGGGCACATAACCAGGCACCTGGCTAAAATACATTTTGAGGTATCGGAGAAAGCCAGTCGGTGTGAGCACTGCTCATTCTCAACAAGAACCGGGTGGCGGTTGAATGTCCATAAGAAACGAAGCCATCAAGACAATGCCTTGAAGTGTCCTCATTGTGATTTCCAGACTGTCTATCGGTGTGCTTTTAAGGAGCATAAACTGGCTCACACCGAGGGTTATAGGAATAGTCAGCACCAGTGGCTTGACACTCTCTTCAGCAACAGTTCAAAACTAAACGAACAAAACACAAAAGAGGAACAAGCTTCGGAGCTCATGAAAATGTGCGAAATCCGATCTAAAATAGAGAATGATGCGGGCATCGACAAAGTTGAATCTACAAGTATTTATAACGAGCTCAAAATCAAATCGGACGATCCGATTTATTACACCTTTGATCAGGAAAGTGTTGACCAAACTCCATCGAACAATCAACACCAGTTTCATTATACTAAAAACAATGAGTACCTTGTCGACGCAGAAGTTGAATCTGCATTGGGTACTGTAAAAGTCATTGAGTCACCGAATGTAGACCGCCCGTTCCAATGTCCTACATGCAAATATACTTCCAAATTCAAGGCTTCTGTACAAAGACATTATCAACGACACCACACCAGTCTAAACCGACCATACAAATGTGTCAACTGTGATTTCTGTACTAAAACTAAAGACCAAATCGCATTACACAATAAAAGGAGTAAGTCTGAAGAGATACTTATATGCAAAATCTGTGGATATACATCTGTTTTCAAATGTCAATTCCTAATGCACGAAAAAGAGCATTATCCATTCAAATGTGTGCGCTGTGAGTTTCGATGCAAAAAGAAACCGGACATGCAAAAGCACTTTACAATCGTACATCTCGGTAATGGCTTAAAATGCAGCCATTGCGATTACCAAGCAAGTAGAAAGGAGAGCTTGTTATGCCATGAAGCTATACATACAGGAAAAAAACCGTTTCAGTGCCAGTTTTGCGATTACACCTCGGTTCGTCGGTCACTGCTCGAGAATCATGTAAATAAATGTCACAAAAAAACTATAGTGGAGACAATTATTGATGATTCTAAAATTAAGGCGTTAAAAATGAAAAGTGTTGAAGGGAAAGATGATAAGATAGTGATAAAATTGAACTCTGTGTAA
- Protein Sequence
- MSGDESGEQSSSTQKNPNSLIQDNLGIEEDNHNSNLFTSVWVKIEINDDDDDETTVQITEKELKKNDKKRGPYKKCDNLQDLNCEQCDYKTKHKNCLAFHILSHTNSKPFICTQCDYKTMYPVSLKRHVSVKHGDLDLIKPGLQTYKCSDCSYETQFKWNLSSHQRKHDTSKQHKCPHCSYSTVYKHSFVKHSRTHKKPEEFTYYCDKCPFATKYEGHITRHLAKIHFVVSEKASKCEHCSFSTKTGWRLNVHKKRSRQDNPVKCAHCEYQTIYRCAFKQHKLTHVGGNRNDQQWLDSLFTTDTNLHSIQNTQNPREEQALEIMKMCEIRSKIEIDAGTNLNESTKIFDELKSKLNNDPTYYTLNYNNSNNMSDTQPEDQYIDPHYDMDENSVTENYFASVYVKVEVNEDYEEENEMPTGNERFMNLHQKKKPKKPYKRILKDLSCDQCDYKTPYKNCLEIHILGHSDAKPLTCNLCDYKTRFPASLKRHIIFKHEDPGTKDLPTYKCNMCSYQTYIKCNLKSHQRKHDLSKQFKCPECSYSTSYKHNIVKHSRTHNKNENNQTVINKVHKPKEDATYYCDKCPFTTKYEGHITRHLAKIHFEVSEKASRCEHCSFSTRTGWRLNVHKKRSHQDNALKCPHCDFQTVYRCAFKEHKLAHTEGYRNSQHQWLDTLFSNSSKLNEQNTKEEQASELMKMCEIRSKIENDAGIDKVESTSIYNELKIKSDDPIYYTFDQESVDQTPSNNQHQFHYTKNNEYLVDAEVESALGTVKVIESPNVDRPFQCPTCKYTSKFKASVQRHYQRHHTSLNRPYKCVNCDFCTKTKDQIALHNKRSKSEEILICKICGYTSVFKCQFLMHEKEHYPFKCVRCEFRCKKKPDMQKHFTIVHLGNGLKCSHCDYQASRKESLLCHEAIHTGKKPFQCQFCDYTSVRRSLLENHVNKCHKKTIVETIIDDSKIKALKMKSVEGKDDKIVIKLNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -