Gpyr007644.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:7490077-7494823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0092 0.54 11.0 0.6 1 20 174 193 174 198 0.92 2 12 0.3 17 6.3 0.4 3 11 256 264 254 265 0.89 3 12 0.00093 0.054 14.2 0.8 1 23 306 328 306 328 0.97 4 12 0.0021 0.12 13.1 0.6 1 21 333 353 333 354 0.93 5 12 0.0027 0.16 12.7 0.3 1 20 467 486 467 488 0.92 6 12 0.0015 0.085 13.6 0.7 1 22 511 532 511 536 0.92 7 12 0.0027 0.16 12.7 0.3 1 20 731 750 731 752 0.92 8 12 0.0013 0.078 13.7 0.3 1 21 775 795 775 796 0.93 9 12 0.0013 0.078 13.7 0.3 1 21 899 919 899 920 0.93 10 12 0.0013 0.078 13.7 0.3 1 21 990 1010 990 1011 0.93 11 12 0.00028 0.016 15.8 2.0 1 23 1071 1093 1071 1093 0.97 12 12 0.0026 0.15 12.8 0.3 1 23 1099 1122 1099 1122 0.96
Sequence Information
- Coding Sequence
- ATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGATCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATGTGCCCCATTCCAACGTGCATTACTCCCTCGACCACACAGCATCCACAAATGCGGGTTCTGCCAAGCCAAGTTCACGAGTCCGGAAGCCCTGGAGTCCCACCGCGCGGCGTACAGCCACCACCGCAAGGCGCGCCACGTGCGCCAGCAGCGCGCCCGGGCCTCCGCCCCCGCCCCCGACACCCGGCTCAAGTGCAACGACCCCGAGCGACCCTTCGAGAAGTGTCAGCTGGCGCGTCACCCCGACACGCCGTACGCGGCCGTGTACTCGCAGCCGCACAACCGCCACCTCTGCCATCTCTGCGGGAAGACATTCAAGGTAGTACTTACACCTCGCCTTGTACCGCACGCGAGGACGCACATCGCACATCTATATTATGGAAGCCATATTGACCTGACGTTCTTCGTGGACCACGCGAACCTGCACTCGGGCGCGAAGCCCTACAAGTGCGGCGCCTGCCCCCGCGCCTTCGGCACGCGGCGCCACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGATACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACACCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACACTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACCAGAGTGAGTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCTCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACACTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGATACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACACCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACACTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACACCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACACTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACCAGAGTGAGTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCTCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACAGTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCTCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGATACACCTGCGCCAGCACGCGGCGCGCCACGCTCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACACTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACAGTACACTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACACTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGTGAGTACAGTACAGTACACTACAGTACAGTACAGTACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACGCCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGATACACCTGCGCCAGCACGCGGCGCGCCACGCCCCGCCCACGCACACCTGCGCGCGCTGCGGCAAGATGTTCCACAGCGCGGCCAACCTGTACGCACACACCAGAGGGCACATCGGCGACCGTCGCTTCAAGTGCGAGATCTGTTCGAAAGGGTTCCTGCACAGCGCGGCGCTCAACGAGCACGTGCGCGGCGTGCACAACCACATCCGACGTGCACGCAAGTGCGCAGACAAGTGA
- Protein Sequence
- MCPIPTCITPSTTQHVPHSNVHYSLDHTACAPFQRALLPRPHSMCPIPTCITPSTTQHVPHSNVHYSLDHTACAPFQRALLPRPHSMCPIPTCITPSTTQHVPHSNVHYSLDHTACAPFQRALLPRSHSMCPIPTCITPSTTQHVPHSNVHYSLDHTACAPFQRALLPRPHSIHKCGFCQAKFTSPEALESHRAAYSHHRKARHVRQQRARASAPAPDTRLKCNDPERPFEKCQLARHPDTPYAAVYSQPHNRHLCHLCGKTFKVVLTPRLVPHARTHIAHLYYGSHIDLTFFVDHANLHSGAKPYKCGACPRAFGTRRHLRQHAARHAPPTHACARCGKMFHSAANLYAHTRYSTVQYSTPAPARGAPRPAHAHLRALRQDVPQRGQPVRTHQSEYSTLQYSTVQYSTPAPARGAPRPAHARLRALRQDVPQRGQPVRTHQSEYSTVQYSTVHLRQHAARHAPPTHACARCGKMFHSAANLYAHQSEYSTVQYSTVHLRQHAARHAPPTHACARCGKMFHSAANLYAHTRVSTVHYSTVQYTCASTRRATPRPRTPARAAARCSTARPTCTHTPDTPAPARGAPRPAHAHLRALRQDVPQRGQPVRTHQSEYSTLQYSTVQYSTPAPARGAPRPAHAHLRALRQDVPQRGQPVRTHQSEYSTLQYSTVQYSTPAPARGAPRPAHARLRALRQDVPQRGQPVRTHQSEYSTVQYSTVHLRQHAARHAPPTHACARCGKMFHSAANLYAHQSEYSTVQYSTVHLRQHAARHAPPTHACARCGKMFHSAANLYAHTRVSTVQYSTVQYTCASTRRATLRPRTPARAAARCSTARPTCTHTPDTPAPARGAPRSAHARLRALRQDVPQRGQPVRTHQSEYSTLQYSTVHLRQHAARHAPPTHACARCGKMFHSAANLYAHTRVSTVQYTTVQYSTPAPARGAPRPAHARLRALRQDVPQRGQPVRTHQSEYSTLQYSTVHLRQHAARHAPPTHACARCGKMFHSAANLYAHTRVSTVQYTTVQYSTPAPARGAPRPAHARLRALRQDVPQRGQPVRTHQIHLRQHAARHAPPTHTCARCGKMFHSAANLYAHTRGHIGDRRFKCEICSKGFLHSAALNEHVRGVHNHIRRARKCADK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -