Gpyr007187.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:2280918-2290962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6 3.5e+02 2.2 0.8 2 23 2 24 1 24 0.91 2 18 1.8 1e+02 3.9 2.5 2 23 49 71 48 72 0.95 3 18 0.0092 0.53 11.0 1.9 2 23 92 113 91 113 0.97 4 18 3e-05 0.0018 18.9 0.2 1 23 117 140 117 140 0.96 5 18 3.5 2e+02 2.9 2.9 1 20 145 164 145 166 0.91 6 18 0.025 1.4 9.7 0.3 1 23 173 196 173 196 0.94 7 18 1.1 63 4.5 0.1 3 20 475 492 473 496 0.86 8 18 0.13 7.8 7.4 0.1 2 23 521 543 520 543 0.90 9 18 0.55 32 5.5 0.6 2 23 598 620 597 620 0.91 10 18 7.7 4.5e+02 1.8 0.6 2 23 645 667 644 667 0.95 11 18 0.011 0.62 10.8 3.2 2 23 690 711 689 711 0.95 12 18 3.3e-06 0.00019 21.9 0.3 1 23 715 738 715 738 0.97 13 18 0.97 56 4.7 0.5 1 21 743 763 743 764 0.91 14 18 0.095 5.5 7.9 0.2 1 23 771 794 771 794 0.92 15 18 0.0014 0.081 13.6 0.1 2 23 802 824 802 824 0.95 16 18 0.035 2.1 9.2 0.6 1 23 829 851 829 851 0.95 17 18 6.6e-06 0.00038 20.9 1.3 1 20 857 876 857 879 0.94 18 18 1.5e-06 8.7e-05 23.0 2.0 1 23 885 908 885 908 0.98
Sequence Information
- Coding Sequence
- ATGGTCTGTGTGTTCTGCTGTGAACATTTCGAGGAACCCGCAGCGTTCAGAACGCACATGGATATCGAACACCAGACGTTCTCGATTAGAACAGCATTCGCGCATTGCTCCGAAGGTTATATTAAAGCTGACTGCTCTGATATCCGATGCCGCATCTGTTTTCAACAGTGTGACACTCTAGAAGAGGTCGCAATACATTTACGAAAAACACACCATAAACCATTGGACTTGGCAGCACCTTTAGGAATACAGCCCTTCAAGCCGGATAAACTAAAATGTGCTATTTGCCAGTCCAAATTCTTTAGTCTCAGACAACTCAGTCGGCACACGCAGACTCATTTTTTGAGATTCACATGCGAGGCTTGCGGAAAGTCTTACGCTACGAACACAGCCTTACAAGTCCACATTAAATATACGCACGTGATAAAGGAACATTTCTGTAGAAAATGTAAAACTAAGTTCGTTTCGTTAGAGGCAAAACGAAATCACTTACACGAATCGCCGAGATGCTGGTCGTACCTGTGCAATTTATGTGGTGAAAGATTTTTGTCGTGGAATAACAAACAGTTGCATATGAAAGAGGCTCACGGGGTTGCAGAAGAGTCGCACGTTTGTCCAGAATGTGATGAAGAATGGATCACGACAGATGCGTCTGATAAAGTGAATACACATTGCACTTCTCCGGATGACCAGTGGATCATTCAAGATTGTATAAATACGACTCAGACTGAAATCAAACTTGATTGTTTAAAGAACCCTGGTCAATATACACATACGTTGAATCTAGAAGACGAATGGAATACTACAGATTTTAAACATGACAATAAGATAAAACTATCTGAAGATATAGATTTGGCTTCGACTGTGATCAAACACAGCAATATAGAGGACAAATCGACTGGTTCGGACAGAAAGTTAAATTTAAAACAAACTAAATTACCTAAAAGAATATCGAGCAGAAACAAATGCGTTCCTGTAAATAACGAGTGGTCCACTACCACAATTATTAGCCAGCCTTCGACTAGTGGCGAACGTAACCGCTCCCTACCACAGATAGACAACAATGCGGCAAAGCACGTAGAAGATGATGAGATGATTTGGGTGTGTATTGACAATATGTGGGTACAAAAAAACACTAGTGACAAAGATTGGCAATTTTCCTTAACCAACGATGATAAATCACAGAACTCCCTAGAGATTAGCAAAATGGACTTAAAACTTGTTCGAGATAAAGGAAATAATCTGTACATCAATATGAATAAACAGACTAAGATAAAAACACTTCCTAACAAAGTATCTGAAAAACCACCATATGTAAGAAGTATTAGTTATGCTAAAAAATGTTTGCCTAATGCTCGGCTAATACTGGAGCACACGACAGCGGTCCCCATTCGAATACAACTCCAGAACATAGAAGTGCCGTGCTTTGCATGCCAAAGTAAATTCATAGATCCATATGATTTAAGGATACACTTCTTTGCAGAACACAAAGACGTTGACAAGACTAAAGGCATGCATTTGTATAACTCAATTCAAACTCGTGTCGATATCACCGACCTTTCCTGCCTGTTATGTGATCAATCATTTGATACTTTAGAGGAAGCAGCGAAACATCTGTTCCAAGAACATGAATTGAATATCGACATGAAAGAGAGATTGGGTCTTGTGCCTATTAAGTTACCTCAAAAGGAAATGAACGGGAATAACAATGCGCCTGCGGCGAGACGCAACGCTGGACTAATCGTGAGACATTCGACAGTGTACCCGTTCAGACTTCCCGTTAACTGTATGGTCTGTGTGTTCTGCTGTGAAAGTTTCGAAGAAGCTTCTGCATTTAGAAAGCATATGGATTTAGAACACAAAACGTTCACACTAAAATATATGTTCGAACATTGTCGTGAAAGCTTTTTAAAAGCTGATTGCTCCGATGTGAAATGCCGCATCTGTTTACAGCCGTGTCAATCTCTCGAAGAAATTGCAATTCATTTAAAAAAGTACCACTTGAAACCATTGGACTTGGCTGTTCCTTTAGGTATAGAACCTTTCGATTTCAAATCGGATAAATTATGTTGCGCGATTTGCAAGAGAAAAGCCTACAATCTACGACAGCTCAGTCGACATATGAAGACTCATTTCCATAGGTTTACATGTGACTCTTGTGGAAAATCGTATGCTACCAATGGATCACTAAAAGTCCATATTAAAGTTTCCCACATCATAAAAGGATATTTATGTCGAAAATGCAAAACTCAATTTGATTCGTTAGATGCAAAGAGAGATCATATACAAAGCTCTCCAAAATGCATGTTATACACATGTAACATCTGTGGCGAAAGATTAATGTCAGTCGTAACGAAACGGCAGCACATGAATGATGTTCACGGGATCGCAAAGAAACCGCGTGTCTGTCCTGAATGTGGTCAGATATTCAAAAGTGAAAATGCTTTCGTAAACCACTTTAAAGTAAGTCACACAGACGATAGTTTCGTTTGCACCTTATGTGGGCTTAAGTTTGCCACTAAATTAATATATGAAAAACACAAAATCACTCATACAAACGAAAAACCTTACTGTTGTACTATTTGTGACAAGGCATATAGTACGAATTCTAATTTAACGCTTCACATGTGGGTACACAAAGAGGAAAAACGATTCGAATGTAACTTGTGTAATAAGACATTTAATCAGAAGGTCAGTTTGCAATCCCATTTAAAAACGAATCATCCTGATTTGAAGTTTAAAGAAAACGATAGAAATGTCTAA
- Protein Sequence
- MVCVFCCEHFEEPAAFRTHMDIEHQTFSIRTAFAHCSEGYIKADCSDIRCRICFQQCDTLEEVAIHLRKTHHKPLDLAAPLGIQPFKPDKLKCAICQSKFFSLRQLSRHTQTHFLRFTCEACGKSYATNTALQVHIKYTHVIKEHFCRKCKTKFVSLEAKRNHLHESPRCWSYLCNLCGERFLSWNNKQLHMKEAHGVAEESHVCPECDEEWITTDASDKVNTHCTSPDDQWIIQDCINTTQTEIKLDCLKNPGQYTHTLNLEDEWNTTDFKHDNKIKLSEDIDLASTVIKHSNIEDKSTGSDRKLNLKQTKLPKRISSRNKCVPVNNEWSTTTIISQPSTSGERNRSLPQIDNNAAKHVEDDEMIWVCIDNMWVQKNTSDKDWQFSLTNDDKSQNSLEISKMDLKLVRDKGNNLYINMNKQTKIKTLPNKVSEKPPYVRSISYAKKCLPNARLILEHTTAVPIRIQLQNIEVPCFACQSKFIDPYDLRIHFFAEHKDVDKTKGMHLYNSIQTRVDITDLSCLLCDQSFDTLEEAAKHLFQEHELNIDMKERLGLVPIKLPQKEMNGNNNAPAARRNAGLIVRHSTVYPFRLPVNCMVCVFCCESFEEASAFRKHMDLEHKTFTLKYMFEHCRESFLKADCSDVKCRICLQPCQSLEEIAIHLKKYHLKPLDLAVPLGIEPFDFKSDKLCCAICKRKAYNLRQLSRHMKTHFHRFTCDSCGKSYATNGSLKVHIKVSHIIKGYLCRKCKTQFDSLDAKRDHIQSSPKCMLYTCNICGERLMSVVTKRQHMNDVHGIAKKPRVCPECGQIFKSENAFVNHFKVSHTDDSFVCTLCGLKFATKLIYEKHKITHTNEKPYCCTICDKAYSTNSNLTLHMWVHKEEKRFECNLCNKTFNQKVSLQSHLKTNHPDLKFKENDRNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -