Gpyr016086.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- ken
- Assembly
- GCA_947859175.1
- Location
- OX401871.1:5320087-5329335[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.74 10.6 1.8 2 23 63 84 62 84 0.96 2 12 0.021 1.2 9.9 1.0 2 23 91 113 90 113 0.95 3 12 0.057 3.3 8.6 0.2 2 23 121 143 120 143 0.88 4 12 0.0052 0.3 11.8 3.4 1 23 149 171 149 171 0.96 5 12 2.8e-07 1.6e-05 25.3 3.4 1 23 177 199 177 199 0.96 6 12 0.053 3.1 8.7 0.2 1 19 205 223 205 226 0.95 7 12 0.17 9.8 7.1 1.1 3 19 245 261 244 266 0.92 8 12 0.00033 0.019 15.6 4.4 1 23 545 567 545 567 0.98 9 12 0.00023 0.013 16.1 6.2 1 23 574 597 574 597 0.98 10 12 0.0062 0.36 11.6 0.9 1 23 605 628 605 628 0.95 11 12 5.4e-05 0.0031 18.1 2.0 1 23 634 658 634 658 0.98 12 12 0.00014 0.008 16.8 3.0 1 21 664 684 664 685 0.95
Sequence Information
- Coding Sequence
- ATGGATTCCAACTTATCTTATTTCAGTTTACCTTTTGTGGACTCCGCAGACCTTGAGTACGATGACCTACATCCTACACTACCTTCCCATGGGTCTCTACTTGGCGCTGATGACGATGTACTGGCCCAGTTCCTCTCTGAAGACGATCCTTTGGAAGAGCCCGACTTAAATGGGCCCACTACCTTGCACTGTGAGATTTGTAGGAAGCAATTTGACAATGCAAAGAAGTACTATGGCCATTTGAGGGTTCATTCTAAGGACAATCTGTGGACTTGTGATAAATGTCCAAATGAGAAGTTCTCAACAAAGCAGATGCTGATGAAGCACAGTTTGACTCACCAGCCACTCGAGAAAGTGTGGCGCTGTCCTCAATGTGACATGTCTTTTGAAGCGTTGTGGAGACTGCAGCAGCATTTGTTTGCTAAACATTTGGATTATAGGCCTCACAAATGTGATGTATGTTCAAAAGCATTCCACAAATTATCAGACTTGGATAAACATAAGGATATTCACGAAGATAATAAGAAACATGCATGCACTGTCTGCAAAAAAAAGTTCATTGATAAATCGAACCTGAAGAGGCACATGTTAACTCACGGTACTGAGAAGCCATACTCGTGTGCTGGATGTGGTCATTTATTCAAACAGATAGCCTCTATGAGACGTCACAGTTTAAATTGTCCGCTTGTTATAAAGACTGAACAACAAAAGAAATCACACGGTAGTAACTATTGCAGAGTGTGTGGACTACCCTTTCAGTACAAGAGCTCGTTACTAGAACATTGTGTAAGGGAACATTCGAACAATCCATCTCAGCTTCCCCCAGAAAAGCCAAAAGAAGACCAGTCAAACCAACTCCACGTAGACACAAACCGAACCGTCGATAACATAGTCGACGACATTTTATCGGCCGAAGACGACTATTTGACTATGTCTACACAAAACGAACTTGTCTACCCCTCAGAAAATCCAGACAACTTAATGCAGATCGAACTATTAAAAGAAATGAATCAAATGCACATCCTAGATGACGAACTCCTATATAACGACATAGATTTAGACAGCTTTCAAACTATGTGCAACAATATAGATTGCGAACGAAATGAGCTATTCGATTTGAACGATGGACGAATGGATATCATCAATGGAAGAAGTCTAGATCAAGAACTAATGAATGCATTGGTGCGTGGCATAGAAGCGAAAGACGAAATCCCAAAAGATTTCATCGAACCACCAGAAATGGACACTAAAGTCAATGAATTCCTAAACCCACCAGTTACCGTCAACGAGTGCGCAACTATATTCGAAAGTGACGTAGATTTGGAAGCTAGTACGAATCTAGCGGCTAATTTGAACCAACTTATAAGTGAAAATACTCTAAATACTGTACAGTATATTGCTACGGAGAACGACGATACGTTTATTATAAGTTTAAATAGCGAAATAGATACAGAACAACTAACTGATATGTTGAATATTGGCGTTGATAAATCATATCCAATACAAAATGAAGTCAGTCTTCAAGAAGACGAACCTAGAGAGACTGTACATATAGAAGCAAAACCTTCAGATGTAGTAGAACCTAAACAAGAACACACTGAAAAGGTAAAGAATAAAAAAACTAGGATTATGTATGTGTGTTTGAAATGTAAGAAGATTTTTAAGACGAAACATAATTACATATCACATCGAGGAACACACGACTCAGACCTTCAGCAATTCAAGTGCAAAGTGTGTTTCGAGAGATTTAGTTACAAGTCGACATTTAACAAACATACGAGAAAGAAACATACGCCGATTGTTAAAACGCCTCATACTTGCTCATTGTGCGATAAAAATTACGATGCGGCTTGGCAGCTGAAACAACATACAGAACGTGATCACAAATGTATTTTGCCGTATCAATGCGAAGTGAAGGATTGCGGGAAGAAATTTTATAAGAAATATGATCTAGACACGCATTTAAGATTTCACACCGGTGAAAAGCCTTTCAAGTGCGTCACTTGTAGTAAAGGATTCAAGACTAATTCTCATCTCGTGAGGCATGTCAAACATGTTGATTGTTCTAAACGTAAGAAAAATAAAAAAAGCAAGCAAATTCAATACTCTAACGACCTCGTGGCTCCTCAAAATCATACAATAGAAGAAAATGATGGCAAGACCTCCAAAAGCTTGCTCCTATCATCTTATAATTTCAAACTAGAAGGCGATGAAGTCAAAAGTGTGCTTGTATCATCTCATAATTCAAAAATAGAAGAGAAACCAGTCAAAAGATTGCTTGTATCAACTAATTCGAAAATGGAAAACAAACCCAAAAAGGCAAAAAGCTTGCTTGTAAAATCTCTTCCAAAACTGAAAATATAA
- Protein Sequence
- MDSNLSYFSLPFVDSADLEYDDLHPTLPSHGSLLGADDDVLAQFLSEDDPLEEPDLNGPTTLHCEICRKQFDNAKKYYGHLRVHSKDNLWTCDKCPNEKFSTKQMLMKHSLTHQPLEKVWRCPQCDMSFEALWRLQQHLFAKHLDYRPHKCDVCSKAFHKLSDLDKHKDIHEDNKKHACTVCKKKFIDKSNLKRHMLTHGTEKPYSCAGCGHLFKQIASMRRHSLNCPLVIKTEQQKKSHGSNYCRVCGLPFQYKSSLLEHCVREHSNNPSQLPPEKPKEDQSNQLHVDTNRTVDNIVDDILSAEDDYLTMSTQNELVYPSENPDNLMQIELLKEMNQMHILDDELLYNDIDLDSFQTMCNNIDCERNELFDLNDGRMDIINGRSLDQELMNALVRGIEAKDEIPKDFIEPPEMDTKVNEFLNPPVTVNECATIFESDVDLEASTNLAANLNQLISENTLNTVQYIATENDDTFIISLNSEIDTEQLTDMLNIGVDKSYPIQNEVSLQEDEPRETVHIEAKPSDVVEPKQEHTEKVKNKKTRIMYVCLKCKKIFKTKHNYISHRGTHDSDLQQFKCKVCFERFSYKSTFNKHTRKKHTPIVKTPHTCSLCDKNYDAAWQLKQHTERDHKCILPYQCEVKDCGKKFYKKYDLDTHLRFHTGEKPFKCVTCSKGFKTNSHLVRHVKHVDCSKRKKNKKSKQIQYSNDLVAPQNHTIEENDGKTSKSLLLSSYNFKLEGDEVKSVLVSSHNSKIEEKPVKRLLVSTNSKMENKPKKAKSLLVKSLPKLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00633003;
- 90% Identity
- -
- 80% Identity
- -