Gpyr007224.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:2540450-2543565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.032 1.8 9.4 0.5 1 23 112 134 112 134 0.98 2 16 2.2 1.3e+02 3.5 0.1 2 23 160 182 159 183 0.93 3 16 0.056 3.3 8.6 0.1 2 23 205 227 204 227 0.95 4 16 0.00023 0.013 16.1 0.2 3 23 235 256 234 256 0.98 5 16 0.0011 0.066 13.9 0.6 3 23 263 284 262 284 0.95 6 16 0.013 0.78 10.5 1.6 1 23 290 313 290 313 0.96 7 16 0.00078 0.045 14.4 2.1 2 23 320 342 319 342 0.95 8 16 0.0064 0.37 11.5 0.4 1 23 348 370 348 370 0.97 9 16 0.00039 0.023 15.4 1.2 1 23 376 399 376 399 0.94 10 16 0.00032 0.019 15.6 3.3 1 23 613 635 613 635 0.98 11 16 0.016 0.91 10.3 0.1 3 23 661 682 659 682 0.94 12 16 0.0053 0.31 11.8 1.1 2 23 703 725 702 725 0.96 13 16 0.22 13 6.7 0.6 3 23 733 753 732 753 0.89 14 16 0.14 8 7.3 0.6 2 23 759 780 758 780 0.92 15 16 0.014 0.83 10.4 1.4 1 23 784 807 784 807 0.97 16 16 0.11 6.4 7.6 4.0 2 23 814 836 813 836 0.95
Sequence Information
- Coding Sequence
- ATGAATTATGACTACCAAATAAGCCGTTACTTTTTCGTATACATAGTGCATGTTGCTTTCTGGCTGCCTCATTATCACAATCCTAAAGCCGATCGTGTTTTCCTTTCAGGAGAACCTAGAGGTGGCCAGAAAGTGAGACTATTGATTAGACCTACCCGACAGCAGGTTCCAGTTCCTGTAGTCAGCGCCAGGCGTTCGGCCCCTTCAGCCAGCGCCATCGCGGCGAGACCCAAAGGGTTATCCTCCCGAGAGAAACGGAACATCATGATCAAAAACGTGCTTGAGGTCTTGCTCAAAACAACCGTTATGCCCTTCCGCTGGCTCAAAAGCTCCTATCGCTGCTTCTATTGCTATGATATATTCCAAGAAGCCTCGGAGCTGAAGGCGCATCAAACTATTCACACAGACGATGCTGTCAAGGAGAAGGCTATGAATAACTACTATGAGCCAGTCGTATACGTCGATATTTCCAATCTAAAATGTGTGGTATGTTCCGAAGAAGTGCCGGACCTGTACGATATGGTCAATCATCTTATCAACAAGCACCACGTTGTGTATAATAAAGATGTAGGGACCTGTATGGTAGCATTCAAACTGAATAATTTTGATGTAAGCTGTTTGATTTGCGGAGTTAATTTTTACACCTTCGGGCCGCTGCTGAACCATACTAACAAGGATCACAAGGGCTCATCGGTTATTCTTTGCGAGATCTGCGGACAGAACTATAAAGATCAGAACCTTTTGCGTTTGCACGTCAGATCCGCCCACGATAACAGCGGAGTTCTCTGCCCAGAGTGTGGCGACAAGTTTGAAACTCGATCCAAACTTAAAACTCATCAGATAAACAGTCACGGATTAGAAAGAAAGTTTAAGTGCTTAGTCTGCGAGCTCGTTTTTAACAGTCATTACAAAAGATCGCGGCACATGGCGGTCGATCACAAAAATAGACAACAGATCAAGTGTCTGCACTGTCCGAAGACGTTCGTCTTTAGGAGTATGATGATGACGCATTTACGCGACTCTCACTTGAAAGTGCGCAATTTTGTCTGCGGTGTGTGCGGATGGAGAGCATTTAACAGTAACCGGCTGAAGAATCATATGTATAAGCATAGCGGGGAGAAGAATTTCAAGTGCGATGGTTGTGATAAGACCTTCAGCACTCGGAAAATCATGAAGGCTCACTATGCCAGGATGCATAAGGTCGCACCCATCGTCCCTGTACCAGTCATGCATTACAATGCTTACAAACTTCAATATTTCGACACGAGTTCAGAACTGACACAAGAAAGACTATCAGAATCGACTGAGGATACGAGAGAATTGACGACACAAGAAAGACTATCAGAATCGACTGAGGATACGAGAGAATTGACGACACAAGAAAGGCTATCAGAATCGACTGAGGATACGAGAGAATTGACGACACAAGAAAGACTATCAGAATCGACTGAGGATACGAGAGAATTGACGACACAAGAAAGACTATCAGAATCTACTGAGGATACGATAGAATTGACGACACACGAAAGACTATCAGAATCGACTGAGGATACGAGAGAATTGACGACACAAGAAAGACTATCAGAATCTACTGAGGATACGATAGAATTGACGACACACGAAAGACTATCAGAATCGACTGAGGATACGAGAGAATTGACGACACAAGAAAGACTATCAGAATCTACTGAGGATACGATAGAATTGAGATCGGACATATGCCCAGATGGCCAGAGTGACTATAAGCTATGTGCGAATCTAGAAAAGCTGAGAACGAATGTCAGAAACGTAATTCAAGCATCGTCCGTCATGCCTTTTCGATGGCTCGTCACTTCATACAGATGTTTTTACTGCTACGAAGTCTTCCAACATCAAGACGAACTAAGATCGCACCAAATGCTTCACGATGACTCAGAAATCATCGACGCTATGAGGAAGTTCTGGGATACAGCAGTTTATATAGACGTTTCTGATATAAACTGCAAACTATGCTCTTCAACTTTCTCTTCCGTAGACTCTTTGATTGATCATTTGATAGTCGATCACAAAATACCTTACAACAAAGATGTGACAAGCTTTCAGACTTTTAAATTGGGTGAGAAAGTCTCATGCACAGAATGCAAGTCAAAGTTTAATAATTTCGCAATGCTGCTCTCTCATATGAAATCATATCATCAACATAGTGAGGACCGGCTCTGCTACGTTTGCGGGAAAGCTTTCAAACCGCACCAGATTAGAATGCATCTAGCTAATGAGCATAGAAGTAAAACTATGAAATGCACGGTTTGCAGTAAAATCTTCAGCTTGACCACAATAAGAACTCACATGGTACGAGAGCATAACAAACGGTTCAAATGCAATATGTGTTTAGAGACATTTGAGACAGCGTACAAACGCACTGTACATCGTACGACCGTTCACAAAGAACGTGAAGTAGTGAAGTGTCCACATTGTCCAAACACTTATTACTATAATTGCACTATGAGAAAACATGTGAAACAAGTCCACGAGAAGGAAAAGAAAATTGGATCTAAGAAAACTATCTCAGAAGCAAAAACTTAA
- Protein Sequence
- MNYDYQISRYFFVYIVHVAFWLPHYHNPKADRVFLSGEPRGGQKVRLLIRPTRQQVPVPVVSARRSAPSASAIAARPKGLSSREKRNIMIKNVLEVLLKTTVMPFRWLKSSYRCFYCYDIFQEASELKAHQTIHTDDAVKEKAMNNYYEPVVYVDISNLKCVVCSEEVPDLYDMVNHLINKHHVVYNKDVGTCMVAFKLNNFDVSCLICGVNFYTFGPLLNHTNKDHKGSSVILCEICGQNYKDQNLLRLHVRSAHDNSGVLCPECGDKFETRSKLKTHQINSHGLERKFKCLVCELVFNSHYKRSRHMAVDHKNRQQIKCLHCPKTFVFRSMMMTHLRDSHLKVRNFVCGVCGWRAFNSNRLKNHMYKHSGEKNFKCDGCDKTFSTRKIMKAHYARMHKVAPIVPVPVMHYNAYKLQYFDTSSELTQERLSESTEDTRELTTQERLSESTEDTRELTTQERLSESTEDTRELTTQERLSESTEDTRELTTQERLSESTEDTIELTTHERLSESTEDTRELTTQERLSESTEDTIELTTHERLSESTEDTRELTTQERLSESTEDTIELRSDICPDGQSDYKLCANLEKLRTNVRNVIQASSVMPFRWLVTSYRCFYCYEVFQHQDELRSHQMLHDDSEIIDAMRKFWDTAVYIDVSDINCKLCSSTFSSVDSLIDHLIVDHKIPYNKDVTSFQTFKLGEKVSCTECKSKFNNFAMLLSHMKSYHQHSEDRLCYVCGKAFKPHQIRMHLANEHRSKTMKCTVCSKIFSLTTIRTHMVREHNKRFKCNMCLETFETAYKRTVHRTTVHKEREVVKCPHCPNTYYYNCTMRKHVKQVHEKEKKIGSKKTISEAKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -