Gpyr006670.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- salm
- Assembly
- GCA_947859175.1
- Location
- OX401862.1:6201960-6212046[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00044 0.026 15.2 0.2 2 23 145 166 144 166 0.93 2 11 0.00064 0.037 14.7 2.4 1 23 172 194 172 194 0.96 3 11 6.5e-05 0.0038 17.8 0.2 1 23 305 327 305 327 0.98 4 11 1.7 1e+02 3.9 0.1 2 23 334 356 333 356 0.93 5 11 0.00023 0.013 16.1 0.0 3 23 409 430 407 430 0.90 6 11 0.054 3.1 8.6 0.6 1 23 443 465 443 466 0.93 7 11 1e-05 0.00061 20.3 0.2 1 23 506 528 506 528 0.98 8 11 0.00069 0.04 14.6 0.2 1 23 534 556 534 556 0.97 9 11 0.00039 0.023 15.4 0.3 1 23 562 584 562 585 0.95 10 11 0.31 18 6.2 0.1 1 23 600 622 600 622 0.97 11 11 0.0041 0.24 12.1 0.1 1 20 760 779 760 782 0.94
Sequence Information
- Coding Sequence
- ATGGATGGAGACAGAGAGTTCAACCTCCATTGGGGAGGAGGGGAGGTGGTGGTGAAGCATGACCCTGATCATCAACAAATATGTAGCATCGAAAGTGTGCATAGTGGATTTACAAATATGACTCCCGAAGAAATAATGGCAAACACAGATCAAATGGCTGCTGAGAACCTAATGTTCCTGGCCCAAGATGTGATTGGTTATACTGACACTGCAGAACTGGCAGATGACAGCGTTGAGTGTGTAACAGAGGAAGTCATTGCAGATGATTGGGTGGTGGATGGTGGTCAAGAAGCAATGGATGTGCCTATTGATCACTTAGCAAACACTGTAGAACTGAATGAAAAAGAAGAAAATGATGTTGCTGTTCCATTACCAACAGATCAAGAAATCAACCTACATTCACAAGATGAGTACACAGCGATGCGTCCATGGCCGTGCGATTTCTGCTCGCGTCGTTTCCGCAAAAAAGCAGCACTAATGAACCACATGGTAGCACATCAGAACGATAGGCCTCACGCTTGTAACCTGTGTGGTGTGCGTTATGTACGGAAATGTGACCTTATGAACCATCTCAAGGTGCACGCTTATGTGCCCGACAATGCTGATTCTGTGGACTTTGAAGAATTGCTAGAAAACAACCAAATTGTCAAACCAAAGAAGAAGCGTGGGCGGCGAAAAAAGATACCTGAGCCAGAAGAGGACGAATGGGAGAATATGACATCAGCGCGAACACAGCAATGGTCCCGACGCGGTCGGTCCCCTGCCAAGCCGCCGCCATCGCCACCGCCAATGTCGCCACCGTCACCAGTGACGCCACCATCGCCACAGTCACCGCCGTCGCCACAGTCATCGCCGTCGCCACCGCCACCGTCACCGTCACCGCCGCCAACGCCCGCCGACCCGTCACGCCCCTTCGTCTGTAAGACGTGTGGCATCGGGTTTGCGAGGGAGAAGGCTCTTCAGTCACATTCTAGGGTCCATGGCGGTGATTCCCCGGTAGAATGCGGCGAGTGCGGGGAGCTGTGCTGGTCGCGCGACGCGCTCGCGACGCACGCGCGACAACGCCATCCGCATCTCCCGCCGCGCACCACCCAACCAACCAACTACAATGAATCAGACTCCGGCGACGACATGGATTACCGGTTGTCTCCCGAGTCAGTGCCCAGCAGCGGGCTCCCAGAACGGCCGCCGGTCTACGAGAGAATGCGAGGACCCGAGCTGTTCTGTCCGGACTGTGGCGTTGCGTTTCAACGAGCTGATCTGTTGAGGCGACACGTGGCTGCCGCGCATAGTTACAAGCGGGCGGCGAGCGGCGCGTGGGGCGAGCACACGTGCGACGCGTGCGGCGAGGCGTGCAGCGACGCGCTGCAGCTGCTGGCGCACGCCGAGCTGCACCACCACCGGCCGAGCGACGCGGCCGCGCCCAGCCCCGCCTCCGCCTCCGCCTCCGCCTCCAGGTTAAAAAGATCGTCCAAGGGACGTAATAACCCGGGGTTCTCGAGTAATTCAAGGCAATTCCCTTGTAGGGAATGTGGCAAAGTGTTCGGTTCACGCAGTTCACAGCAAATTCACATTCGCATCCACACGGGCGAGCGGCCTTATGCATGCCGGTTCTGTTGGAAAGCCTTCGCCGATGGAGGCACGTTGAGGAAACACGAGAGAATACACACGGGTGAGAAGCCATATGCCTGCGCAGTATGTCCGCGTGCGTTCAACCAACGCGTAGTACTGAGAGAACATGTACGATCGCACCACTCTGCGCCGGATCGACGGCAACAGGTCAATGGTGGCGCGGCGTATTCGTGCGTGGTTTGTGCGCGTGCGCTGCACACCAGTGTGGAGTTAGTACAGCACCTCATTCAGCATTGCGACGCCAACACGGCGCTCACACGACAGCCACAGACCGGCCCGCGGAAATACAAGCGGCGGCGGAAGATCAAGAGCCACGTGACATCGCCCCCCCGCGACTGGACGACGCCCTCCCCCCCGCCGGTGCGCACCCCATCGCCCTCCAGCCCCCCGCGGGTGCGCACCCCCTCCCCCGCGGGGGGTGCGCGCCGTCGCTCTCGCCGCGGGCCCCCTCCCCGGCCCCGCATGATACATACATCGGAGGAGACGAGGGGCAAGACTAAACAGGTCAAGAGCTTACGGCAACGGCGGCCGCCGCGGCACCCGGCCGACGACCTGCGAGCCATCGGCCCACATTCTCCATCCCCGAAGCAAGAGATCGTCTCTCCCCCCGCGTCCCCCCCGCTCCACGAGACCGAAGGCGCTTCCTACAAATGCGAAATGTGCGCGGAAGAATTCCCCCGTCGAAGTGACTTACTGCTACACGTGCCTGTGCATATATGA
- Protein Sequence
- MDGDREFNLHWGGGEVVVKHDPDHQQICSIESVHSGFTNMTPEEIMANTDQMAAENLMFLAQDVIGYTDTAELADDSVECVTEEVIADDWVVDGGQEAMDVPIDHLANTVELNEKEENDVAVPLPTDQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNADSVDFEELLENNQIVKPKKKRGRRKKIPEPEEDEWENMTSARTQQWSRRGRSPAKPPPSPPPMSPPSPVTPPSPQSPPSPQSSPSPPPPSPSPPPTPADPSRPFVCKTCGIGFAREKALQSHSRVHGGDSPVECGECGELCWSRDALATHARQRHPHLPPRTTQPTNYNESDSGDDMDYRLSPESVPSSGLPERPPVYERMRGPELFCPDCGVAFQRADLLRRHVAAAHSYKRAASGAWGEHTCDACGEACSDALQLLAHAELHHHRPSDAAAPSPASASASASRLKRSSKGRNNPGFSSNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRQQVNGGAAYSCVVCARALHTSVELVQHLIQHCDANTALTRQPQTGPRKYKRRRKIKSHVTSPPRDWTTPSPPPVRTPSPSSPPRVRTPSPAGGARRRSRRGPPPRPRMIHTSEETRGKTKQVKSLRQRRPPRHPADDLRAIGPHSPSPKQEIVSPPASPPLHETEGASYKCEMCAEEFPRRSDLLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377360;
- 90% Identity
- -
- 80% Identity
- -