Gpyr007219.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:2519725-2527765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.74 43 5.0 1.3 1 23 243 266 243 266 0.95 2 23 1.5 88 4.1 0.3 3 23 293 313 291 313 0.93 3 23 0.00025 0.015 16.0 0.6 1 23 333 355 333 355 0.98 4 23 0.053 3.1 8.6 1.0 1 23 359 381 359 381 0.93 5 23 0.26 15 6.5 0.2 1 22 385 406 385 408 0.87 6 23 0.00047 0.027 15.1 0.2 1 23 414 437 414 437 0.96 7 23 0.0079 0.46 11.2 1.1 1 20 444 463 444 465 0.85 8 23 0.015 0.89 10.3 2.6 1 23 524 547 524 547 0.95 9 23 0.32 19 6.2 0.8 2 23 573 595 572 595 0.95 10 23 0.0013 0.077 13.7 2.3 2 23 618 639 617 639 0.96 11 23 0.011 0.62 10.8 1.6 1 23 643 665 643 665 0.96 12 23 0.13 7.4 7.5 1.5 1 23 669 692 669 692 0.95 13 23 1.7 1e+02 3.9 7.3 1 23 698 721 698 721 0.96 14 23 0.091 5.3 7.9 1.7 1 11 728 738 728 742 0.88 15 23 0.2 11 6.9 5.2 1 23 790 813 790 813 0.93 16 23 4.8 2.8e+02 2.5 0.1 3 23 840 861 838 861 0.91 17 23 2.2e-05 0.0013 19.3 1.1 1 23 882 904 882 904 0.98 18 23 0.022 1.3 9.8 0.6 1 23 908 930 908 930 0.96 19 23 0.00043 0.025 15.2 2.5 2 23 935 957 934 957 0.97 20 23 0.011 0.65 10.8 1.1 2 23 962 984 961 984 0.96 21 23 0.0093 0.54 11.0 1.9 1 23 990 1013 990 1013 0.93 22 23 0.0012 0.072 13.8 0.7 1 23 1019 1042 1019 1042 0.97 23 23 2.3e-05 0.0013 19.2 0.6 1 23 1048 1070 1048 1070 0.99
Sequence Information
- Coding Sequence
- ATGGAGTTTGCTGAAGTGACTGTGAAGGAGAGCCCTGGGCTCTGCCGGTGCTGTCTCTCCGAGGGATGCTACAAAGACCTCGGCACTGAATATTCATGGATGAACGATACCGAGGTGTATGCCGACATGCTTCTGGACTGCTTTGATATTGGCATTTCCCAGCACAACGATGGCCCCAATGGCCCAAAGAGGCTGATCTGTGAGGTGTGCATCACCCGACTGCGGGATGCCTGTAACTTCAAGAAGCAGGTGGTCGACTCGGAGAAGAAGTTCATCGATATGCTTGGACGAGGAGACTTTCGGCTTACTGAGAAAAATACAGTGCTGCTACCGATATACTCTTGCGAGGCCCCAATGAAGGCGGAAGCTATTGAAGAGGTAACGGTGAGGGACTATGATCACTCTAATGTCGACTTCCTCGATGACAACGACTTCACAGAGGATGAGGAACTGGTGAAGTCTGAACGTGCATCGATCTCTGCCCCTGTTGCATCTACATCCTCTGCAGCAGTGAAACGAGGCCGGCCTAAGAAGAAGGAATCTGAAGTACCGGAGAAGAAACCTAAGATGAAGGCCAAATCGAAGATACCTAAAGGTGTCAAGGCGACTTCTGAGGCGTCGAGTAAGTCCTCACAACCACTCAATGTGAACCGAATCATAAAGCAAAACGTCGCCACAATACTCGAACACTCCACTGTTGTCCCTTTTCGGTGGTACATGCATTTTTACATGTGTTTCTACTGCCACTTATATATACAAACTTTCGAAGCTCTCAAAATCCATATGGACGTTAATCATAAAAACCCAAAAATCAAATCGGTTGTCTCGCTAATAAAAAAGGACGAAAAAGTCAAGGTTGAAATCAGTTGTATGGCTTGCAAGCTGTGCGAGCACCAACCTACCGACCTAAACGCACTCATAGCCCATCTAAAAACCCACAAACTGCTCGAAAACGACACTAAATTGGCGGTGATACCATACAAACTTATAGGAGAGTATCGTTGCGGAATATGTAACGAGAGTttccagtacttcgtcacactgaaccagcatatgaacggtcattacgggcagcacgtttgcgaggtctgcggGAAAATGTTTCTCAGCACGGAGCGGTTGAATTCTCACAAACTTCTCCACACGGCTAAGTTCCGTTGTAGTATGTGCTCGGAAATTTTCGACACTGCCGTGAAACGAACTAATCACGAAGCAGAAATCCACGACAAGGTGAAAAGTTTCAAGTGCTTGTATTGCCCTGAAACGTTTCCAACTAAAGCAGAGAATACAGTGCATCTTAAAGCAGAACATGAAGTTATAATGCCGGTGTATGATTGCCCGGTCTGCAAGAAGGCGTTTACGAATAAGAGCAGAATGCGATTCCATTTGAAAAAGTGTAGGCAGATACTTACAATTCGTGCCACTGGTCCCGACCCTGTGGCGACTGACGAAGCGAAAATATCGCCAATCCCTAACACATGCATTAAAAGAAACCGCTTGATAAAGATGAACACCATTAATATCTTACAATACTCAACTGTTGTCCCCTTTAAATGGCACAGACAATCCTACCTCTGCTTTTATTGTAATTGCTCACTGAACACGTTTGACACTCTCAAAATACACATGGAAACCGAACACAAAACCACAAACATAAAATCAATTGGGATACTGACAAAGAAAAATGATAAAGTCAAAATCGACGTCGCATCCATCAGCTGTAAACTCTGCCACTCGAATCTTAAAGACTTGGAATCTCTTATAGATCACTTAAAGAACGAACACGGAAAAGTGTTTTACGACGAACTAGGTTATGGTGTGATGCCCTATAAGCATCGGGCTGATACCTGCCAATGCGCTATATGCGATGAGACTTTTCAATACTACATTAAGCTCAACCAACATATGAACAAGCACTACGGACAACATGTCTGTGAAGTGTGCGGCAAATCGTTCCTCAACACCAGACGGCTAAAAATCCACACTCTCTCTCACGGCTCTGGGTTTCCTTGCAATCGCTGCTCCGAAACCTTTGACTCTTACGCTAAGAGAAAAAACCACTACGCGAAAATGCATGATATAGCGAAGGTCCACAAGTGTTGTTACTGCTCTGAAACTTTTCCCAACTACGGCGCACGGACGCTTCATCATCGATACACACATAATATAGATACACCGATATTCAATTGTCCTGTTTGCGGGAAGACATTTCGGCTTTGCAGTGGCAAACGCCCCGTACCCGTGAAGTCCCTCAAGGCACCGAGTCACTCAATATCAGCCATAAAGCGCAATCGCTTAGTGAAGCGAAATGCTACTATTATCCTACAAAATAGCAGCGCACTCCCTTTCAAATGGCACAGGCAGCTTTACCTATGTTTCCATTGTCACAAACCATTCCAACTCTTCGACGATCTCAAAAAACACTCCACTACCGAACATGAAACTACAAACGTCAAATCGTCTGTATCGTTTCTTCGGGGAGACTGTCTAGTGAAAATAGATGTCGCGTCATGGTTCTGCAAGATTTGCAACTTTGAACCTAGCGATATCGACGCATTGGTTAATCATTTAAAACTTGAACATAACAAGGTTTTCGAAGATGCTGAATACGGAGTCGTGCCGTACAAGCATCAAACTGACTCGTTCAATTGCGCAATTTGCGACAAAAGCTTTGCTTACTTTATGAAGTTGAATCAACACATGAACACGCATTTCGGAGTATACGTGTGTCACGCATGTGGAAAGTCTTATCTTAGCAGTGACAGGTTACGCGTTCACGCCAATCTCCATACAAACAGCGTACGTTGCGACCACTGTCCAGAAACGTTTCGCTCGCTCTCCACTAAAAAATCTCACATGAACAAAGTGCACGAGTCTAAAGTCAAATGCTTCCAATGTTCCGAAACGTTCACTAACTACAATCAGAGGAAGGTGCATCTTAAGATCGCGCATGACGTGGGTTCTCTGCACGCTTGTCCCGATTGTGGGAAAGAGTTCTCCTGCAATAGCAGAATGGAGCAGCATCTGAAAGAAGTACACTATAAAGAGACTTATTTCAACTGCACCATGTGTGAGCAAAGGTTCTTTGCGAAATGGCAGCTAACGAAACATGTTCGGGTTGCTCACATTAGGGGTAAAGAGTACGAATGTGAAGTCTGTCTGAAGTCTTTTATTAAGTTAAGCACGTTGAATGAACATTTAAAAACGCATAGTGATGATAAAACTCCTGCCAGTATTAGCCACAAACTACTTCCAATAGACTGA
- Protein Sequence
- MEFAEVTVKESPGLCRCCLSEGCYKDLGTEYSWMNDTEVYADMLLDCFDIGISQHNDGPNGPKRLICEVCITRLRDACNFKKQVVDSEKKFIDMLGRGDFRLTEKNTVLLPIYSCEAPMKAEAIEEVTVRDYDHSNVDFLDDNDFTEDEELVKSERASISAPVASTSSAAVKRGRPKKKESEVPEKKPKMKAKSKIPKGVKATSEASSKSSQPLNVNRIIKQNVATILEHSTVVPFRWYMHFYMCFYCHLYIQTFEALKIHMDVNHKNPKIKSVVSLIKKDEKVKVEISCMACKLCEHQPTDLNALIAHLKTHKLLENDTKLAVIPYKLIGEYRCGICNESFQYFVTLNQHMNGHYGQHVCEVCGKMFLSTERLNSHKLLHTAKFRCSMCSEIFDTAVKRTNHEAEIHDKVKSFKCLYCPETFPTKAENTVHLKAEHEVIMPVYDCPVCKKAFTNKSRMRFHLKKCRQILTIRATGPDPVATDEAKISPIPNTCIKRNRLIKMNTINILQYSTVVPFKWHRQSYLCFYCNCSLNTFDTLKIHMETEHKTTNIKSIGILTKKNDKVKIDVASISCKLCHSNLKDLESLIDHLKNEHGKVFYDELGYGVMPYKHRADTCQCAICDETFQYYIKLNQHMNKHYGQHVCEVCGKSFLNTRRLKIHTLSHGSGFPCNRCSETFDSYAKRKNHYAKMHDIAKVHKCCYCSETFPNYGARTLHHRYTHNIDTPIFNCPVCGKTFRLCSGKRPVPVKSLKAPSHSISAIKRNRLVKRNATIILQNSSALPFKWHRQLYLCFHCHKPFQLFDDLKKHSTTEHETTNVKSSVSFLRGDCLVKIDVASWFCKICNFEPSDIDALVNHLKLEHNKVFEDAEYGVVPYKHQTDSFNCAICDKSFAYFMKLNQHMNTHFGVYVCHACGKSYLSSDRLRVHANLHTNSVRCDHCPETFRSLSTKKSHMNKVHESKVKCFQCSETFTNYNQRKVHLKIAHDVGSLHACPDCGKEFSCNSRMEQHLKEVHYKETYFNCTMCEQRFFAKWQLTKHVRVAHIRGKEYECEVCLKSFIKLSTLNEHLKTHSDDKTPASISHKLLPID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638932;
- 90% Identity
- -
- 80% Identity
- -