Gpyr018619.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gandaritis pyraliata
Gene Symbol
L
Assembly
GCA_947859175.1
Location
OX401851.1:6078968-6086642[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.61 36 5.3 5.8 1 23 51 73 51 73 0.97
2 15 8.2e-06 0.00048 20.6 4.1 1 23 79 101 79 101 0.99
3 15 2.5e-05 0.0015 19.1 0.1 1 23 107 129 107 129 0.98
4 15 2.2e-05 0.0012 19.3 0.1 2 23 145 167 144 167 0.95
5 15 2.7 1.6e+02 3.3 0.2 3 23 191 213 189 213 0.79
6 15 0.29 17 6.3 0.0 3 23 265 285 264 285 0.97
7 15 0.16 9.4 7.1 0.0 3 23 300 320 299 320 0.91
8 15 4.5e-05 0.0026 18.3 0.6 1 23 328 351 328 351 0.94
9 15 0.032 1.8 9.4 0.1 1 23 356 379 356 379 0.92
10 15 0.0016 0.096 13.4 0.2 1 23 433 457 433 458 0.96
11 15 0.00098 0.057 14.1 0.0 2 23 513 534 512 534 0.96
12 15 0.16 9.3 7.1 0.0 1 23 542 564 542 564 0.97
13 15 0.85 49 4.9 0.3 1 23 668 690 668 690 0.94
14 15 0.0034 0.2 12.4 0.1 1 20 698 717 698 720 0.95
15 15 0.11 6.5 7.6 0.3 1 23 727 749 727 749 0.94

Sequence Information

Coding Sequence
ATGGGAGACGGTCCTCGGCAGATAAGCTGGGAGCTCTCGCGCGGGAATGTTATCAGACTTATCAGGCGCACGTATCGATTCTTTACACTCAATGACTTCTACAAAAAGAAATCTTTTGTCCATTTACAGACGCATTCAGACCAAATGCCGTTTCGATGTGAGTTTTGCTCGCGTCTGTTCAAGCACAAGCGTTCCAGGGACAGGCACGTGAAGCTGCACACCGGGGATCGGAAGTACCGCTGTGCACACTGCGAATCTGCTTTCTCGAGGAGTGATCACCTGAAGATCCACATGAAAACTCACGACAACCAGAAGCCGTTCCAATGCACAGTTTGCAACCGCGGGTACAACACCGCAGCTGCACTGACGTCACACATGCAGGGCCATAAGCGGGACCGGGAAGGCAGGGAGCCGGACCGGCGGCGACCGATGCGGTGCTTGCGGTGCGGGGAGGCCTTCCGGAGACCTGATCTGCTTCAGGCTCACATGGCAAGTGCCCACGGCGTTGACGCAGCAGCCTTAACACCACCGCGTCGCGTTGCCTCTCAACCACCCCCCACTCTACTCGCCTGCATGTATTGCACTCGCGACACCTTCACAAGCATGGAGCAACTGCAGTTACACGTGCGAGCTGCTCACTCCGCCTTACTCAATGGAGAAGCCATATCTGTTGTTGATCAGCCGGCTCCAACCGATCTTAGTCGAAGAGCATCAGATGACGCGCCACCAGTTAAACGCCCACGCTCTGGGTCCGGAACCCCTCAAACTACGCTCTCTCCCAACACGTTGCTATGTAACCAATGTGACGCAGCGCTGCCAGATTTCGAAGCATTTCGCGCTCATTTGAAAGGGCATTTGGAGGAAGGTGGAGAGTTGACCAGAACGAGTCCAGCTCCATGTGTGCACTGTGGAGCTACGTTTGCTGATGCAGCGGCTTCGGAACGTCACCTGACTGCCCATTACCTGGCTGTCTCCTGTGAATACACTTGCCACAGCTGCGCTAGAAGTTTTCCAACACCAGATGATCTGCAGAAGCATCTGTTAGATCTTCACGCTCACCATCTCTATCGATGTTCTCTATGCAAGGAGATCTTTGATTCTAAAGTTGCGATTCAGGTCCATTTCGCGGTGGCCCACAGCGGCGAGAGCAAAGTATGGGTTTGCCGGGGTTGCGGAAGTGGGGCAGGGGCGTTGCGCTCGGAAGCCGATGGAGTAGCTCACGTTAGAGCGAGACATGGCGGGGCTCGGTGCTCCTGCGGCGCCTTGCTCGGAGGCCCGAGACTTCGCCCCCGCGCTTACAGATGCCCCGTACCGACTTGCTCTGATGCCTTTGCAGTGCAGTACTTGTTGGAGCGGCATATGCAAGTGCATCATGCGATGGCTCAACAGGTCTTAAACGGCGAGTTAACCAGACCAAAACGCGTCGAAAACAACAACGGAACAGAGGCTGATGGTACCTGTTCCCCATGCACTACTACCGAGCCAACGATTCCTGTAACAGAAGAGCGAAGACGGAAGAATGGTGCTGTAGCATTGCAGTGCGCTTATTGCGGAGAAAGAGCTAGAAGTCGTGCTGAGTTGGAAGCTCACACAAGGGCTCATTCTGGAGCCGCGGCGGCGAGACACAAGTGCCTCATTTGTGACGAGATTCTGCCGTCCGCCGCTGTATTGGCCGAGCATAAACTGACACATTGCAAGGTGGTCGCAGGCGACACTTGCTCCAGGTGTCGAGCTCGCCTCCTCTCCGAAGAATCATTCCTTAACCACATGGCTCGTCACCATCCAGCGCTGCCCGCGCCGTGCGTGGTCTGTCGACAAACATTAGCGTCGGAAGCCGAGGCGAGGTTACACGCACGTTTTCATCTCCGCCCTAACGAGGATGAACAAAGGTGTGCAATCTGCCTCCGAGCACTACCCGAAGGCGAGGCGGGCGAGGGCGCGCGGGCCTGTGCAAGTTGCTACGCGCGTCACGCCACGCCGCGCCCCGCCCCGCCGGCCGACCACGACTGCCGCCTCTGCCGGCGCGCGCTCGGCTCCCCCACCCGACTCCAAGCACATCTCATCGAGCACACCTTCGCAGGCATCGGAGCTTTCACCTGCTACCTCTGCTCGGCTGTCTTCACGAGCGCAGCGGGGTTACAGCGCCATCTGCCAGAACACGCCTCCGCTCCGAGACCGTACGACTGCGCCCGTTGCGGTATGAAATTCTTCTTCCGAGCGGAGTTAGACAACCACGCGTTTGTGCATCTCGAAGAAGCTGAGATCGCCCAACGAGCGTTTTACGAAGCGTACGCTCGAGGAGCGGCCAGTGCGTGGGCAGCTTTAGCCCCACAAGAACCGGCCCACGTGACCACGCCGGCACCAGAAGTAAAGCAAGAACCGGAGATAAAGGAGGAGCGCAGTGACGAGTACATTGAAGTGGCTTCCCCACCGCCCGTTCCTCCAGTTTCATCCCCAGCCCCGGTAGTTAAACAAGAGAAAGTTGATGAGGAATAG
Protein Sequence
MGDGPRQISWELSRGNVIRLIRRTYRFFTLNDFYKKKSFVHLQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRPMRCLRCGEAFRRPDLLQAHMASAHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEAISVVDQPAPTDLSRRASDDAPPVKRPRSGSGTPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRTSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRGCGSGAGALRSEADGVAHVRARHGGARCSCGALLGGPRLRPRAYRCPVPTCSDAFAVQYLLERHMQVHHAMAQQVLNGELTRPKRVENNNGTEADGTCSPCTTTEPTIPVTEERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCSRCRARLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRALPEGEAGEGARACASCYARHATPRPAPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGMKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPQEPAHVTTPAPEVKQEPEIKEERSDEYIEVASPPPVPPVSSPAPVVKQEKVDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_01429280;
80% Identity
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