Basic Information

Insect: Gandaritis pyraliata
Gene Symbol: -
Assembly: GCA_947859175.1
Location: OX401850.1:6095558-6104997[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0093 0.54 11.0 0.3 3 20 194 211 193 215 0.95

2 13 0.00022 0.013 16.1 0.8 2 23 255 276 254 276 0.96

3 13 1.3 73 4.3 4.5 2 21 283 302 282 303 0.90

4 13 0.14 8 7.3 0.6 2 19 323 340 322 345 0.88

5 13 0.022 1.3 9.9 0.4 2 20 351 369 350 371 0.90

6 13 0.00034 0.02 15.6 1.7 1 23 379 402 379 402 0.97

7 13 1.1e-05 0.00063 20.3 1.0 1 23 425 447 425 447 0.97

8 13 6.4e-07 3.7e-05 24.1 3.6 1 23 454 476 454 476 0.98

9 13 2.5e-07 1.5e-05 25.4 1.4 3 23 490 510 488 510 0.96

10 13 1.1e-06 6.6e-05 23.3 0.8 1 23 516 538 516 538 0.99

11 13 1.5e-06 9e-05 22.9 2.8 2 23 545 566 544 566 0.96

12 13 1.4e-07 7.9e-06 26.2 1.5 1 23 572 594 572 594 0.99

13 13 0.0024 0.14 12.9 0.1 1 23 600 622 600 622 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0093	0.54	11.0	0.3	3	20	194	211	193	215	0.95
2	13	0.00022	0.013	16.1	0.8	2	23	255	276	254	276	0.96
3	13	1.3	73	4.3	4.5	2	21	283	302	282	303	0.90
4	13	0.14	8	7.3	0.6	2	19	323	340	322	345	0.88
5	13	0.022	1.3	9.9	0.4	2	20	351	369	350	371	0.90
6	13	0.00034	0.02	15.6	1.7	1	23	379	402	379	402	0.97
7	13	1.1e-05	0.00063	20.3	1.0	1	23	425	447	425	447	0.97
8	13	6.4e-07	3.7e-05	24.1	3.6	1	23	454	476	454	476	0.98
9	13	2.5e-07	1.5e-05	25.4	1.4	3	23	490	510	488	510	0.96
10	13	1.1e-06	6.6e-05	23.3	0.8	1	23	516	538	516	538	0.99
11	13	1.5e-06	9e-05	22.9	2.8	2	23	545	566	544	566	0.96
12	13	1.4e-07	7.9e-06	26.2	1.5	1	23	572	594	572	594	0.99
13	13	0.0024	0.14	12.9	0.1	1	23	600	622	600	622	0.97

Sequence Information

Coding Sequence: ATGGCATCATCAAATGCAAAAATAGAAATAAAAATAGAAAAACTGTGTAGAACATGCCTATCAAAAGACAATGAATTGAACTCATTATTTGATGTGGTTGTGGGAGAAGTACCTCTAGATTTCCTAGTAACAGCAATCACAGGACTAAAGATTCGCAAAGGAGATGGTTTGCCTACTACCATCTGCTCTGATTGCAGAGATAAAGCTGAGAAAGCTTTTGAATTTAAAAAGAAGTCTGAAGAAGCTTATAATTGCCTAAAAGGCTTCTATAAGGATCAGAAAAGTCTTATATTTGAGTTTGATGAACACTCTAGCCAGAAATCCATTGGTTTTAAGACCGAAGATTCTCAATATAGCGACCATGATGACTTTTCCGACGTCGATTACAGTTTGCCTCTTAAAAATGGACCCCTCGATATCAGTAATGAAATTAAGGTAAAAGTTAAGCATGAAAGTTCCAGTCGAGAGTATTTTGAATGCAAAAAATGCTGTCTAATATTCCAAACTCGAATGAAATATCAAGAGCATAAGAAAAGCAAGTGTGTAAAAGTTGAAATTGAAGATCATAGTGGCGCGCACTGCCCTATTTGTGGTACAAGCTATGACGGTGCTAACAGTCTCTCGAACCACATGTGGCAATTCCACGCTGATGTTATGGGTCCCAAGAAAAGGGGACGACCTAAAAAGGCTATGACTTCAACCATACTTAGTAAGTTATCCGAAAATGGGTTTTTTATAAAGACGGTCCAAGGAAAGAAAACTAAATGCGGTTTTTGCAAAGAGCAATTTACTACCAAAGAAGATTTGGCAGCACACATGTTTCAACATAGCGACACGAAAGTTTTATGCTGTGTTATTTGCAAGAAGATGTATACGAAGAAAAAGAAATTCGATGTACACCGTTGTGTTGATGATACAACTAAAAATGCTTTGAACAAAGCTGAAAAGAATGCTGGCATTGTTCAAGTTTGTAGCGTATGCAGTGGCGTGTTTTCGACAGAAGAACTTTTACGAGAGCATTGTGATACAGATCATCCTGAACTTTCATTACGATGTAATCATTGTAGCAAGGTTTTCGCATCTGTGAAGACGGCTGCCCGTCATAGGTCCTTGTGCAAAGATATTGACAGAATACACAGATGCTCAACTTGTGGTTTGAAGTTTGCCTACGAGATATCGTTGAACAAACACATACTGAGATACCACCAAGGACAAAGGGTGTTTGTTGCACACCAGGCAAAAGATGCTAAGGTTACGGATAACAATGTAAAGTATACGTGCGATACGTGCAATAAAACATTCCAAAGGAAGGAAGCTCTTGCAAAACACGCTAAATTGCACATGCCCAACCAAAAATTGTTCGAGTGTGAAATATGCCATAGAAAGTTCAATAGGAGTGATAATTTGCGTACCCATAGACGTATTCATGACGCCGACCGGCCGAAGGCACCAACGAACAACCACTTGTGTCTCTATTGCGGCAGAGGCTTTTCAAACTCGTCCAATCTCATTGTGCACATGCGAAGGCATACCGGCGAGAAACCGTACAAGTGCGATTTTTGTGAAAAAGGTTTTCCGAGGTCCTCTGATCTTATGGTCCACAGGCGTTCTCATACGGGCGAGAAACCTTGCGTTTGCCGTCTTTGCGGGAAAGCGTTCTCCCGCAGCAACAAGTTATCGCGTCACATGCGCGTGCACACCGGTCAAAGACCTTACAAATGCACGTACTGCGACAAAGCTTTCTCGCAAAGCAACGATTTAACACTCCACGTGCGCCGTCACACCGGTGACCGGCCGTACATATGCAACGTCTGCGGTGACAGATTCATACAGGGCACTGCATTGCAGAACCATCGCCGAGCCCACGGACATTTTAGTGAGCCTCCACCACCCGGACTCACAAATCCAGTACAAGCTATAACATACGCGATATCTAATATCGCACACCATGACGACTCGCATTTATCTAATACTATTACGTCGATCTAA
Protein Sequence: MASSNAKIEIKIEKLCRTCLSKDNELNSLFDVVVGEVPLDFLVTAITGLKIRKGDGLPTTICSDCRDKAEKAFEFKKKSEEAYNCLKGFYKDQKSLIFEFDEHSSQKSIGFKTEDSQYSDHDDFSDVDYSLPLKNGPLDISNEIKVKVKHESSSREYFECKKCCLIFQTRMKYQEHKKSKCVKVEIEDHSGAHCPICGTSYDGANSLSNHMWQFHADVMGPKKRGRPKKAMTSTILSKLSENGFFIKTVQGKKTKCGFCKEQFTTKEDLAAHMFQHSDTKVLCCVICKKMYTKKKKFDVHRCVDDTTKNALNKAEKNAGIVQVCSVCSGVFSTEELLREHCDTDHPELSLRCNHCSKVFASVKTAARHRSLCKDIDRIHRCSTCGLKFAYEISLNKHILRYHQGQRVFVAHQAKDAKVTDNNVKYTCDTCNKTFQRKEALAKHAKLHMPNQKLFECEICHRKFNRSDNLRTHRRIHDADRPKAPTNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICNVCGDRFIQGTALQNHRRAHGHFSEPPPPGLTNPVQAITYAISNIAHHDDSHLSNTITSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811280;
90% Identity: iTF_00686576;
80% Identity: -