Gpyr007221.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:2530551-2536238[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.03 1.7 9.4 1.8 1 23 53 75 53 75 0.95 2 30 0.58 34 5.4 1.0 2 21 102 121 101 124 0.94 3 30 0.0027 0.15 12.7 1.0 2 23 145 167 144 167 0.96 4 30 0.00052 0.03 15.0 4.7 1 23 172 195 172 195 0.96 5 30 2 1.1e+02 3.7 4.0 1 23 199 222 199 222 0.92 6 30 2.6 1.5e+02 3.3 4.7 2 23 225 247 224 247 0.96 7 30 3.6 2.1e+02 2.9 3.6 2 19 254 271 254 274 0.93 8 30 0.0032 0.18 12.5 3.7 1 23 323 346 323 346 0.97 9 30 1.6 94 4.0 0.1 2 23 375 397 374 397 0.92 10 30 0.043 2.5 8.9 1.9 1 23 418 441 418 441 0.96 11 30 0.0013 0.075 13.7 0.3 1 23 446 469 446 469 0.94 12 30 0.0032 0.19 12.5 0.7 1 23 474 497 474 497 0.93 13 30 0.0075 0.43 11.3 1.8 2 23 503 525 502 525 0.95 14 30 0.0004 0.023 15.3 5.5 1 23 529 552 529 552 0.97 15 30 0.011 0.64 10.8 0.3 2 23 559 580 558 580 0.96 16 30 0.0022 0.13 13.0 2.3 1 23 586 608 586 608 0.96 17 30 4.4 2.5e+02 2.6 3.5 1 23 652 674 652 674 0.96 18 30 6.6 3.8e+02 2.1 0.0 3 23 703 724 701 724 0.85 19 30 0.035 2 9.2 4.1 1 23 744 766 744 767 0.96 20 30 0.002 0.12 13.1 8.3 1 23 772 795 772 795 0.97 21 30 0.078 4.5 8.1 1.2 1 23 800 823 800 823 0.93 22 30 4.7e-05 0.0027 18.3 3.2 2 23 826 848 825 848 0.96 23 30 0.01 0.6 10.9 1.9 1 23 931 954 931 954 0.97 24 30 0.013 0.75 10.6 0.2 2 23 1029 1051 1028 1051 0.92 25 30 6.5e-05 0.0038 17.8 0.7 3 23 1058 1079 1056 1079 0.95 26 30 0.00034 0.02 15.6 3.2 2 23 1084 1106 1083 1106 0.95 27 30 0.011 0.64 10.8 0.5 1 23 1111 1134 1111 1134 0.97 28 30 0.0029 0.17 12.6 6.2 1 23 1138 1161 1138 1161 0.97 29 30 0.085 4.9 8.0 1.7 3 23 1169 1189 1168 1189 0.96 30 30 4.8e-06 0.00028 21.4 1.3 1 23 1195 1217 1195 1217 0.99
Sequence Information
- Coding Sequence
- ATGTCCCAACGACTTTCCTTCTCGGTATCACTGAAACAAGCACAGGATGTGAAACCTTCAGGAAACATGCAATTACCTGGCAGTGAATGCAGGCGAAGGAACCTCCAAGCATTAGTCAACAATACCTCAGTGATACCGTTTAAATGGCGTGGCAAATATTTATGTTTCTTTTGCGGAAAAGATATACAAAACCATAACGATTTAAAAGAGCACATGAAAATACACGTTCCCTGCTCAACTAACAACCACGCAATGAAACTTATAAGATGCGGAAATGAAATTAAAGTAGACGTCTCGGAAACTAAGTGCAACGTTTGTTCAGAAGAGTTATCTGATATAGATAGTTTGATATCACATTTGAAATGTAAACACAAGCTTTGGCACGATGCCGAGACGACGCTAATACTCGCAACATACCGACTGGTCGACTTGAAATGTCTCGTTTGCGACGAGACTTTCAAAATATTCCAAAAGCTCGTACGTCATATGAATAAAAGCCATCCCCATAATTCATTTCAATGTGACATCTGCCGCCAAACGTTCAATAAGAAGCGACATTTATCAGATCACATTAGGTTTTATCACCTGAAACATTACAACTGTCCCAAATGTTCTCTCTCGTTTTCATGCTTCCAGGACCTTGACAAACATAAATCTAAGATGCACTTCTCTAAGTGCAATCTTTGCTTGCGAATGTTTTCATCGTATCAGAAATGTCTAAATCATATGAAGAAGGAACATCAGTTAAACGACGGAGGAGAGTGTGCATTTTGTCAAAAACAATTTCACACAAAACACGATTTTTTGGATCATTCCTTTAAATGCCAATTTTATATTAAAGACGAAGAAGAAATTGTAGTCGTTGACGACGAAAGTAAGTATGAGAAAGTAAGAGATCTCAGAACCAGTATTGCGTACATCATCAATATGACCGCTGCAATGCCTTTTAAGTTCTTACGAAGCAAATTCCGATGCTTCTACTGTTCGAAAGACTTTAGTGTTTGTGGCGATCTCAGACAACATACGACAACTGAACATCCCATGTGCGAGACGACAATGCCTGCGATGAAGCTGCGGGGAAGGTCTGAGGGGATCAAGATAAAAGTCGACACATCCTCATTAAATTGCCAATTGTGCGCTGAAAGATTCACCGATTTCACCGCTGCGATCAACCATTTAGAAATTGAACACAAAGTCGTCTTAACTAAATGCATCGACATGTTTCGACCCTTTAATTTGGTACACGATAAGTTTTTCTGTACGTTTTGTAGCTTAGAATTTAGATATTTTAGTTTACTGTTACAGCATGTGAATTCGAATCACTCTAAAAAGAACTTCATTTGCACGTTTTGTGGCAAGCCTTTCGTTTCGTTAATAACTCTTCGCGGTCACATCTCTTACCGCCATTCTAATGATAAGTACAAATGTAAAGATTGCAATCGAACTTTCCTAACTGACGATAGTTTGACGATACACACGGGCAGAGCACACGGCAAAAAGTTGATTAAGTGTCCGCAGTGCACGGAAAAGTTTATCTCACGGTATCATAAAATGAGACACGTTATTAAAGTTCACGGTGGAGGTCATAAATGCTCCTTCTGTGGGATGGCTTTCACCAAATACTCGCATATGATGAACCATATTAGAAGATCACATTATAAAGAGAAAACTGTCCCGTGTACTATGTGTAAAGAATTGTTTTTTGACAAGCCAAGCTTGAAGATGCACATGGTGAGACATGTTGGCCAGCGCTCCTTCTGCTGTGACTACTGCGGGAAGGGCTTCCTCAGAAAAAGGAATCTTCGAGGTCATGTGACTGTTCATCTTAAAAACGGCAGAAAACATAATGAAACGCCCGCCCTGATCGACCAAAACTCGGGTGACCGAAGGAGGAAAAACTTGAAAACGATATTCAATAACACGACAATTATCCCCTTCAAATGGCGAAGAATGCACATCTGTTTCTATTGTAATACTCAAATCCAAGATTATATTGAATTCAGAAAGCATACAAAGTCTCACGGCAAATGCAGCATAAAGCATCACGCAATGAAACAGCTAAGGGGAAACGGACTGTCGGTTAACGTAGACGTATCTGAAATTGCGTGTCAACTTTGCGAGCAGCAATTCAAAAGTTTAGAAGTGATTGTAGAGCACTTGTTAAACGAACACGACTTGTTCTACGACAAGCAAGTTTATAATGAAGTCTTAGAATACAGGTTGGTCGACTTCCAGTGCACGCAATGTGACCTACGATTCGAAGCGTTTACACATTTAGTTTCTCACGTGAATAAGCATCATCCGCTGAACAATTTTGTTTGTCATCATTGCGGACGCAAGTTCAATAAAAAGAGACACATAACGGACCACATGAGTAGTTACCACCGGTTTGGAGGTTATGTTTGCAAACAATGCGGGTTGGAATGCAAAAGCCGTCTCGTACTACAAAAACATTCAGCGAAAGCACATGTAACGCGATGTCACGTTTGCGGCAAGCACTTCATTTACCCTAATAAGCTGATCAAGCACATGAAACTCGAACATCCAAACGATGATGGCAAGACTTGCGGGTTTTGCATGAAAGAGTTCCATTCTTCACCAGGTCTAAAACTGCACTTACCAAAATGCAAAGTGAGGTTGATCTCGCAAGACGAAACTGAAAGCATTATCCCTAAGAGCAAGAATTCTACTAACCAATCGAGAACGCACGAGCAAATCGTACGTATCCGCGAAAACATTCAATGTGTCCTTAACATGTCCACAGCGCTACCGTTTAGGTTTAGAGTCAAATTCTCCTGTTTCTACTGTTCCACAAAGTTCGATGATTACGAGGTGCTCAAACAGCATACGCAAACAGAACATCCTATATGCGACATTAAAAGCAAATCGATGAAGAAGTGTAAAGGGCAACGCACGTATGTCAGAGTCGATATAGCGGGTCTTGCTTGTAAATTGTGTTCCTCACCCATGCCGGACTTGGAGCATTTTATCGATCACGCCATCTCCGTTCACAACGCGGACTACGACAAATCTATAAGTATCGAAACTTGCTTTGAACCTTATCGTTTGATCAAAGGCAGCATTCCCTGTCTAGAATGTCCCAAAGTTTTCCGGTACCTCAACACTATGCTCAGGCATTTCAATTTAGAGCACAGCAATAATAACATGATATGTGACTACTGCGGTCGCGGTTTCCGCAGTACCACCAATTTAAAAATGCACCTTCAGAATACTCACATCGGTTCTTGCGAATGTAAGTTTTGCGACGCCAAGTTCAGGAACCAATCCTTCCTGGTGCGTCACATGGCTAAAAGTCACAACCAGAAGACTTTTAAATGTGCCAACTGCTCAGAGATGTTCGAGTCTGCGTACCAGAGGCAGACGCACTTGATCAAAGTCCATGGCATCGGGCACAAGTGCGAGTACTGTGGCAAGATGTTCACGAAACATTCGTTCATGGACTCTCACGTCAGACGCACGCATTTGAAGGAGAAGAACGTCGCTTGCTCCGTTTGCAACGATAAGTTCTTTGATAATCATTTACTGCGGATGCATATGGTGAAGCACGAAGGTGAACGAAAGTTCAAGTGCGAGTTGTGCGGTAAAGCGTTTCTAAGGCAAAAAAACTTGCGAACTCACATGGACACTCACAAGAAATACGGGTTCGTACAATAA
- Protein Sequence
- MSQRLSFSVSLKQAQDVKPSGNMQLPGSECRRRNLQALVNNTSVIPFKWRGKYLCFFCGKDIQNHNDLKEHMKIHVPCSTNNHAMKLIRCGNEIKVDVSETKCNVCSEELSDIDSLISHLKCKHKLWHDAETTLILATYRLVDLKCLVCDETFKIFQKLVRHMNKSHPHNSFQCDICRQTFNKKRHLSDHIRFYHLKHYNCPKCSLSFSCFQDLDKHKSKMHFSKCNLCLRMFSSYQKCLNHMKKEHQLNDGGECAFCQKQFHTKHDFLDHSFKCQFYIKDEEEIVVVDDESKYEKVRDLRTSIAYIINMTAAMPFKFLRSKFRCFYCSKDFSVCGDLRQHTTTEHPMCETTMPAMKLRGRSEGIKIKVDTSSLNCQLCAERFTDFTAAINHLEIEHKVVLTKCIDMFRPFNLVHDKFFCTFCSLEFRYFSLLLQHVNSNHSKKNFICTFCGKPFVSLITLRGHISYRHSNDKYKCKDCNRTFLTDDSLTIHTGRAHGKKLIKCPQCTEKFISRYHKMRHVIKVHGGGHKCSFCGMAFTKYSHMMNHIRRSHYKEKTVPCTMCKELFFDKPSLKMHMVRHVGQRSFCCDYCGKGFLRKRNLRGHVTVHLKNGRKHNETPALIDQNSGDRRRKNLKTIFNNTTIIPFKWRRMHICFYCNTQIQDYIEFRKHTKSHGKCSIKHHAMKQLRGNGLSVNVDVSEIACQLCEQQFKSLEVIVEHLLNEHDLFYDKQVYNEVLEYRLVDFQCTQCDLRFEAFTHLVSHVNKHHPLNNFVCHHCGRKFNKKRHITDHMSSYHRFGGYVCKQCGLECKSRLVLQKHSAKAHVTRCHVCGKHFIYPNKLIKHMKLEHPNDDGKTCGFCMKEFHSSPGLKLHLPKCKVRLISQDETESIIPKSKNSTNQSRTHEQIVRIRENIQCVLNMSTALPFRFRVKFSCFYCSTKFDDYEVLKQHTQTEHPICDIKSKSMKKCKGQRTYVRVDIAGLACKLCSSPMPDLEHFIDHAISVHNADYDKSISIETCFEPYRLIKGSIPCLECPKVFRYLNTMLRHFNLEHSNNNMICDYCGRGFRSTTNLKMHLQNTHIGSCECKFCDAKFRNQSFLVRHMAKSHNQKTFKCANCSEMFESAYQRQTHLIKVHGIGHKCEYCGKMFTKHSFMDSHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHEGERKFKCELCGKAFLRQKNLRTHMDTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -