Basic Information

Insect: Gandaritis pyraliata
Gene Symbol: -
Assembly: GCA_947859175.1
Location: OX401872.1:7271552-7273207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.2e-07 5.3e-05 23.6 1.6 2 23 89 111 88 111 0.95

2 14 0.00062 0.036 14.7 4.4 2 23 118 140 117 140 0.96

3 14 0.00034 0.019 15.6 0.9 2 23 147 169 146 169 0.93

4 14 1.3e-06 7.8e-05 23.1 0.8 2 23 177 199 176 199 0.96

5 14 1.8e-05 0.001 19.6 0.1 2 23 206 228 205 228 0.95

6 14 0.064 3.7 8.4 2.3 1 23 235 258 235 258 0.96

7 14 4.1e-05 0.0024 18.4 2.9 2 23 265 287 265 287 0.96

8 14 3.4e-05 0.0019 18.7 1.9 1 23 300 323 300 323 0.96

9 14 4.5e-06 0.00026 21.5 0.6 3 23 339 360 337 360 0.94

10 14 5.8e-05 0.0034 18.0 1.8 2 23 366 388 366 388 0.97

11 14 0.093 5.4 7.9 3.8 2 23 396 418 395 418 0.90

12 14 0.00011 0.0064 17.1 5.0 1 23 423 445 423 445 0.98

13 14 0.00066 0.038 14.7 1.0 1 23 451 474 451 474 0.96

14 14 0.031 1.8 9.4 0.1 3 21 508 526 506 527 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.2e-07	5.3e-05	23.6	1.6	2	23	89	111	88	111	0.95
2	14	0.00062	0.036	14.7	4.4	2	23	118	140	117	140	0.96
3	14	0.00034	0.019	15.6	0.9	2	23	147	169	146	169	0.93
4	14	1.3e-06	7.8e-05	23.1	0.8	2	23	177	199	176	199	0.96
5	14	1.8e-05	0.001	19.6	0.1	2	23	206	228	205	228	0.95
6	14	0.064	3.7	8.4	2.3	1	23	235	258	235	258	0.96
7	14	4.1e-05	0.0024	18.4	2.9	2	23	265	287	265	287	0.96
8	14	3.4e-05	0.0019	18.7	1.9	1	23	300	323	300	323	0.96
9	14	4.5e-06	0.00026	21.5	0.6	3	23	339	360	337	360	0.94
10	14	5.8e-05	0.0034	18.0	1.8	2	23	366	388	366	388	0.97
11	14	0.093	5.4	7.9	3.8	2	23	396	418	395	418	0.90
12	14	0.00011	0.0064	17.1	5.0	1	23	423	445	423	445	0.98
13	14	0.00066	0.038	14.7	1.0	1	23	451	474	451	474	0.96
14	14	0.031	1.8	9.4	0.1	3	21	508	526	506	527	0.89

Sequence Information

Coding Sequence: ATGGAAGAAGTGTACGTAAAAGTAGAATTGCATTCAGACTCATCCAGCACAAGGGAAGACTTCCGGGAGTTTAAACCTGATTCTAAAACAATTGACTGCGAGCTTAAAAGTGAATTAAAAAAACATACTGAATCTGAAACATGTGTTAACCAGGATTCTAATAACAGCAATGAGTTTCTCACTCCTACCTTCTCAGAGCTAATACCCAGTTATGAATTGGAAATTAGCGGGAAGGTGTACGAAAATGGAAAAATAAACAGGCTATCCTGTAGCCAATGTGACAAAACATTCAAAAACAGAGCCAATTTGAAGAACCACCTAAAATATGTGCATTCAGGGAACCACAGCGTGGAATGTACCCAATGTTTCCGCACTTTCAAGTCTCATGTACATCTACGTTCACATTTGAACTCGGTACATGCAGCTACAGAAGAAGTGACCTGTAATATTTGTGATAAAGTATTCTTAAACCAAAAGAAGCTCAAAAACCACATTTATTACACTCACCCGCAGCCAACTGAACAAGTCACATGCACTCTGTGCTCTAAAACATATAAATCTCCATACAATCTTAAAATCCACATGAGGCAAGTCCACCCAGAGGGGCAGGCAGTGCCCTGTCCGTACTGCGATAAAACCTTCAAAGTTGACATGCTGCTACAACGGCATATAAAATGGAGTCATCCCGATGATGGAATGGTTTATAAATGCCAGCAGTGCTTCAAAGTGCTGCCATCCATCGCTTGCTACAAGAAACATATTGAAAACACTCATACTCCTTCAGCTAGAGCTACTTGTAACCTTTGCAATCGGACTTTTAAAACTAAAAAGTCTCTCGATCGTCATTTAAAGAATGTTCACAATGGGAAAGAGGTCAAACCGTACATTCCAAGCAACTTCATCTGTTCCTACTGTGATAGAAGTTTCGAGAGCAACACTACACTATTCTGGCATACACAGAAGTACCATCTCGAAGGAGTATCGGTGTGTGATACAGACGTTTCTGGCACTCACTGTGACATTTGTGACAAAACTTACTCAGACAATGCATCACTACAACGACATTTAGCATCGGTCCATTCCTTAGAAACTGCTACTTGTCATATCTGCATGAAGGAGTTTAAATCAGCTATCAACCTTCAAAGTCACATGAGGATCACCCACGCCCCACCGGAAGCTACCCAAACCTGTGATATTTGCAAGAAAACTTTTAAATGCTCACTACATTTACGTATGCACGTAAGCGCTGTTCACACACAAGGAGAATTTCACTGCGACGAGTGTGATAAACTATTCTCCTCTCTTAAGTATCTCACCAAACATAAAAAAACTCACATCCAAACCAGAGAGCATCCTTGTGAACTCTGTGGGAAAATGTTTAAAAGCATATTTGCAGCGAACAAGCACCGAAGAAATGTCCACGGAGGTGTTAAATGCAACTTCTGTCATATTAAACAAACTAAGTTAGATGTGCATCTGCTTAAGTGTCCGAAACGAAATACTGAGGTGGAGGAGTCTGTTTGTATAAAATGCAACAGTGTATTTAAGAGTAACGCGGAGTTGCAACAGCATATATTAAGTTGCGGGTATGAAGATATTGACTCTATTGTTAAGATTGAGATTGAAGTGGTTGATCCCGATGATAAAATGACTTAA
Protein Sequence: MEEVYVKVELHSDSSSTREDFREFKPDSKTIDCELKSELKKHTESETCVNQDSNNSNEFLTPTFSELIPSYELEISGKVYENGKINRLSCSQCDKTFKNRANLKNHLKYVHSGNHSVECTQCFRTFKSHVHLRSHLNSVHAATEEVTCNICDKVFLNQKKLKNHIYYTHPQPTEQVTCTLCSKTYKSPYNLKIHMRQVHPEGQAVPCPYCDKTFKVDMLLQRHIKWSHPDDGMVYKCQQCFKVLPSIACYKKHIENTHTPSARATCNLCNRTFKTKKSLDRHLKNVHNGKEVKPYIPSNFICSYCDRSFESNTTLFWHTQKYHLEGVSVCDTDVSGTHCDICDKTYSDNASLQRHLASVHSLETATCHICMKEFKSAINLQSHMRITHAPPEATQTCDICKKTFKCSLHLRMHVSAVHTQGEFHCDECDKLFSSLKYLTKHKKTHIQTREHPCELCGKMFKSIFAANKHRRNVHGGVKCNFCHIKQTKLDVHLLKCPKRNTEVEESVCIKCNSVFKSNAELQQHILSCGYEDIDSIVKIEIEVVDPDDKMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00632970;
90% Identity: -
80% Identity: -