Basic Information

Insect: Gandaritis pyraliata
Gene Symbol: -
Assembly: GCA_947859175.1
Location: OX401872.1:3728499-3731610[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.6e-05 0.0021 18.6 1.8 1 23 151 174 151 174 0.97

2 13 3.5e-06 0.00021 21.8 2.6 2 23 189 210 188 210 0.97

3 13 8.2e-08 4.8e-06 26.9 1.2 1 23 217 239 217 239 0.97

4 13 1.9e-05 0.0011 19.5 3.8 2 23 245 266 245 266 0.98

5 13 1.1e-05 0.00066 20.2 3.0 1 23 272 294 272 294 0.97

6 13 3.3e-06 0.00019 21.9 0.8 1 23 300 322 300 322 0.97

7 13 9.7e-05 0.0056 17.3 0.1 1 23 327 349 327 349 0.97

8 13 1.5e-07 8.8e-06 26.1 0.8 1 23 355 377 355 377 0.99

9 13 1.2e-05 0.00072 20.1 1.5 1 23 383 405 383 405 0.98

10 13 8.5e-06 0.00049 20.6 3.5 1 23 411 433 411 433 0.97

11 13 1.6e-06 9.4e-05 22.9 0.6 1 23 439 461 439 461 0.95

12 13 1.1e-05 0.00066 20.2 0.7 1 23 467 489 467 489 0.98

13 13 0.00032 0.018 15.6 7.7 3 23 498 519 497 519 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.6e-05	0.0021	18.6	1.8	1	23	151	174	151	174	0.97
2	13	3.5e-06	0.00021	21.8	2.6	2	23	189	210	188	210	0.97
3	13	8.2e-08	4.8e-06	26.9	1.2	1	23	217	239	217	239	0.97
4	13	1.9e-05	0.0011	19.5	3.8	2	23	245	266	245	266	0.98
5	13	1.1e-05	0.00066	20.2	3.0	1	23	272	294	272	294	0.97
6	13	3.3e-06	0.00019	21.9	0.8	1	23	300	322	300	322	0.97
7	13	9.7e-05	0.0056	17.3	0.1	1	23	327	349	327	349	0.97
8	13	1.5e-07	8.8e-06	26.1	0.8	1	23	355	377	355	377	0.99
9	13	1.2e-05	0.00072	20.1	1.5	1	23	383	405	383	405	0.98
10	13	8.5e-06	0.00049	20.6	3.5	1	23	411	433	411	433	0.97
11	13	1.6e-06	9.4e-05	22.9	0.6	1	23	439	461	439	461	0.95
12	13	1.1e-05	0.00066	20.2	0.7	1	23	467	489	467	489	0.98
13	13	0.00032	0.018	15.6	7.7	3	23	498	519	497	519	0.96

Sequence Information

Coding Sequence: ATGTCCACGTCTGTGTGCAGAGTGTGCTTATCCGGCAATCTTAGAATGAATTACATTGAAGATATTGAACTTCAAAATATTTTCGAAAAACTTACAAGTATCGAGCTGAGCACCTCTGGAAGCATTGAGTACATGTGCTTCCTGTGCTATGCTCAACTGCAGCGTTGCTGTCAGTTCGCAGCAACCGCACGGCGCTCCGCCCTCCTCCTGACCGATGTATTTGATAAGGGCTTTCAGGCTACACAAGAAACCCTGGCAATGTTAAAAGTGGAACCTTCTCAACCACTTTCCATAAGCAGCCCTAATTCAATGCACACAATTAATATTGAGCACTCAGACAGTGCGCCCGTGAAAGAAGAACTGACCATTAAGATGGAGTCTTCAGATGACGAAGATGCTGATGAAAAACCAGTCAAAGTGGAAGCCTTCTTCAGTGACACGGAGGAAGGTCATAGCTGTGATATATGCAGCAAAACATTTAATACGACTGGAAAACTGGTAGCACACCGCCGTCGCATCCACGCTTGTAAATTAACAAGGAAGAAAAAATCAGAACAACCGTTGAGCTGTGAAATTTGCAAAAAAACCTTCACCTTTAAATACAACTACGAAAGGCATAAAAGAGTCCACGCATTAGGAGAAAAACCGTACATCTGTGATATTTGTAGCAAAACATTCTCTCGGAACAGTAACTTGAAGCAACACCGACTAATTCATTCGGTAGAGAAGCCAACATGTTCTCAATGCAATGTGACCTTTACCTACAAAAGACACTTGAGAGAGCACATGAGAATTCACGCAGGAAAATCTTGTTTCTCATGCTCGCACTGTGACAAAACATTCACCCGAAGCATATACTTAGAAGAACACAGCAAAGTGCATACCGGTGAAAAGCCATACGCTTGCTCTCAATGTGACAAAGCTTTCTCATATAAAAAACTGCTCAAAGCTCACAGCAGAATCCACGGTGTGAAATCTTATGCCTGTGATCAATGTGGCAAGGCCTTTCCGATGAGAATTAGATTGATAAGACATATGGTTATGCATTCAGAGGATAAACCGTATACATGTGATCGTTGCGCCAAAGCGTTCACTACTTCTAGCAATCTGCAGCAGCACATGATCACTCATACAGGAGAGAAGCCTTATTCGTGCGATAGGTGTGACAAGACATTCGCTCGCAAGCAAGAAGTTAAAATGCACTACCGAGTTCACACCGGAGAAAAACCATACGCATGCTGTGTTTGCAACAAACGCTTCTCACAACGTAGCACCTTGAACGTTCATAAAAGAATTCACTCCGGGGAAAGACCTTTTGCTTGTGAAATCTGCGGAAAAACTTTCGGAGACAAATATACTTTTAGAAAACATATGGTTTTGCATTCCGGGGCTCGACCATTTGTATGCCAACAATGTGGTAATGCGTATAGCTCTAATAGTAGCTTGTATGTGCATCGACGCACACATCGACCACCTACACACACAGCGCCGTGCCATGTATGTTGTAAAACTTTTACTAATAATAGTCACCTTAAGAGGCATTTGAGAAATGTGCATAGGGAGCATCCAGCTAATGGAGAGCGTAGCGAGCCGAGCTTGTAA
Protein Sequence: MSTSVCRVCLSGNLRMNYIEDIELQNIFEKLTSIELSTSGSIEYMCFLCYAQLQRCCQFAATARRSALLLTDVFDKGFQATQETLAMLKVEPSQPLSISSPNSMHTINIEHSDSAPVKEELTIKMESSDDEDADEKPVKVEAFFSDTEEGHSCDICSKTFNTTGKLVAHRRRIHACKLTRKKKSEQPLSCEICKKTFTFKYNYERHKRVHALGEKPYICDICSKTFSRNSNLKQHRLIHSVEKPTCSQCNVTFTYKRHLREHMRIHAGKSCFSCSHCDKTFTRSIYLEEHSKVHTGEKPYACSQCDKAFSYKKLLKAHSRIHGVKSYACDQCGKAFPMRIRLIRHMVMHSEDKPYTCDRCAKAFTTSSNLQQHMITHTGEKPYSCDRCDKTFARKQEVKMHYRVHTGEKPYACCVCNKRFSQRSTLNVHKRIHSGERPFACEICGKTFGDKYTFRKHMVLHSGARPFVCQQCGNAYSSNSSLYVHRRTHRPPTHTAPCHVCCKTFTNNSHLKRHLRNVHREHPANGERSEPSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00686553;
90% Identity: iTF_00686553;
80% Identity: -