Gpyr007372.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:4338155-4356786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.9e-05 0.0023 18.5 6.1 1 23 211 233 211 233 0.98 2 18 3.9e-06 0.00023 21.7 2.9 1 23 238 260 238 260 0.97 3 18 0.00017 0.0099 16.5 5.5 2 23 266 287 266 287 0.97 4 18 8.2e-06 0.00048 20.6 0.3 1 23 293 315 293 315 0.98 5 18 7.7e-05 0.0045 17.6 2.4 1 23 320 342 320 342 0.97 6 18 2.8e-06 0.00016 22.1 2.5 1 21 354 374 354 376 0.96 7 18 2.7e-06 0.00016 22.2 2.5 1 23 382 404 382 404 0.98 8 18 1.1e-05 0.00063 20.3 5.2 1 23 410 432 410 432 0.98 9 18 3.5e-05 0.002 18.7 0.4 1 23 438 460 438 460 0.99 10 18 8.2e-05 0.0048 17.5 3.2 1 23 466 488 466 488 0.98 11 18 4.8e-06 0.00028 21.4 1.6 1 23 495 517 495 517 0.97 12 18 7.1e-05 0.0041 17.7 1.0 1 23 523 545 523 545 0.97 13 18 0.001 0.06 14.0 1.4 1 23 551 573 551 573 0.94 14 18 2.3e-08 1.3e-06 28.7 1.1 1 23 579 601 579 601 0.98 15 18 0.00054 0.031 14.9 2.8 1 23 607 630 607 630 0.97 16 18 0.0024 0.14 12.9 1.7 1 23 1163 1184 1163 1184 0.98 17 18 5.8e-05 0.0034 18.0 0.4 1 20 1189 1208 1189 1211 0.92 18 18 10 5.8e+02 1.5 0.6 8 23 1220 1236 1219 1236 0.89
Sequence Information
- Coding Sequence
- ATGTCTACCCCTGTATGCAGAGTATGTTTGGTTGGCAATCGTAGAATGAATACTATTGAAAACATAGAACTTCGAAAAACATTGATAAAATTGAAAGAAACAGAGTTTGCTACACAAACGGTCATGATGTGCTACATCTGTTATTCTTCTCTTCAGAGATGCCACACATTCTCTGAAATGGTGTACAGATCTGATCTTATTCTTACGGATCTTTATAATAAAGGTTTTGAGGTCACACAAGAGATTCTTTCTATGTTAAGCATTGACACAATATCAACAATACCTAAATTGACTCGGAGCACAGTCAAGTACATGTCAATAGATGATTCTGATAGTACTGGAGATCATATAAATATCAAAGAAGAGATATCTGATGATGAGGAAGCTGTTAAAATGGAAGAAATGGTTGTGTTTAACGGACCAAAACTATTAAATGGTCCTAAAACCTTCAATGATGATGCAGAAATCATTAAATTGGAAGAAATCGACGTACTCAATGGTACTGATAGTGAAGAATTACTAAATGATGATAAAACTTTTAAATTAGAAGGTAGTGTGACATCAACATTGATGGCAGATTTAATATACTGTGATGTTCGTAACAACAAACTAAactctagagaaaagccatattcctgtcatgtatgccatatgtcatttaaagttaaatataacttgcaaacacatatgctcaaacacacaacaaaagtatttgcttgcaaagagtgccacaaaacattcacacaatatggttatttaaacttgcacatgagaattcacaccggagaaaacccctcgtgtgacttgtgcaataaatctttttgtaataaatatgtgttgcgaaaacacagaagaactcacactggagaaaagccattttcctgtgaaatatgcgctaagacgtttactgaaaatggcagtttgataaaacacatgaagattcatatcggaaaaaggtttgcttgtgacaagtgcagtaaaaccttttcccaaaaaaataccttgaatatacacaagtcaacccattccgaagaaaaaccagctatagaacagagtatttatgtttgcggtatatgtaaaaagacattcactcgacaagccaatttgcgaattcacatgagatgtcatactggggaaaagccatatgcctgtaacaagtgcagtaaaagattcgacagaaaaaccaatctgcaaattcatatgaaaagccatatagaaaagaaacagtatatgtgcaatcaatgccataaaatgttcaaccgaagcatcaatttgaagtatcatatgaaaacccacacaaacgataagccatatgtttgtaaccagtgtagtaaagccttctccctacctatatacttacagaggcacttgctaacccacgccaaggtaaaggcatatgcatgtaaccaatgtgacaaaacatacacagtcaaaaacagcttgcacaaacacataaaatcccatgctagtaaatcgttcacacacacatgcgacagatgcgcaaaagtatttactgataacagcagcctgcagagacacatgcttattcacacaggagaaaaaccatttgcctgcgatcagtgtgacaaactcttcgcacgaaaattccagctaaaggagcacacaagagttcacaccggagaaaagccatatgcatgcaacttgtgcaataaatctttcacccagagtagctcccttggctttcacaaaaggattcacacgggacaacgaccatacatctgtgatgtatgcgataaaaccttcactgataaatacagtttacaaaaacatatgagaatccacactggagaaaagccatatgcttgtgaccgatgtgctcaatcattcacatataacagtagtttgcatgatcatatgagaagattccatacaggagaaaagCGATGCCATACATTCTCTGAAATGGTGCAGAAATCAGATATTATACTTAATACCCTCTTTGATGAAGGGTTTGAGCCGACACAAGAATCGCTGAGATTCACAAACATTGACACATTACTGCCAATACCAAACTTATCTGTGAGTGAGGTCACATACTTGTCAACAGATCACTGTGACAATACCACAGACATACTTAATACTGTTGACATACATAACAGTATTGAAGAAGAAATATCAAATAATGAATTACATAGTATAGAAGGCAGTGTTAAATCAATGAGGAGCATAGACTCTGATAACTATGGTGAAAAAAAGTCCGACACAGAACATGGAGCGGACATGATGTGCTACATCTGTTACTCTTATCTGAAGAGATGCTATACATTCTCCCAAATGGTGCAAAGGTCTGATGTCATTCTGAAGACCCTCATCGATGAAGGGTTTGAGGCAACACAAGAGTCACTGACAAACATTGACACAATAGAGACATTACCGATCTTGTCAGTGAGCACAATCACATACATGTCAACAGATGTCTGTGACAACACCATGAGTACTGTAAAACAAGAATCTATTTTTGGTGACAAACAAATGATGGAAGTAGACATAGGAATGGATGGGCTGGATTATACTGACGATGAAGAAATATCGATTAAGAATGAACTTTTTAATGTACAAAGCGTCGCCACATCAAAGGAGACCACAGACTCAGCAACACAAGAGTCACTGTCATTCGTAGATATTGACACAATAGTGGCATTACCGATCTTGTCAGTGAGCGCAGTCACGCACATGTCAACAGATGTCTTTGACAATCCCACAGAGATTATAAAACAAGAACTAGCTGATGACAATGATACGATTGAAAATAATTCACTTGACAGTGGCAAAAGTGTCTGTCGAAATGACAGACAAATGCCATGTTTAAGAGAAGAAGAAGAAATCTCTGACACTGAAGAAATATCTATTGAAAATGAACCTATTAATGTAAAAGTCATTGCCACATCAAAGGAGATAACAGACGACTGTCAGACACATTTTTGTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTGATGATACTGAAGAAATATCTATTGAAAATGAACCTATTAATGTAAAAGTCATTGCCACATCAAAGGAGATAACAGACGACTGTCAGACACATTTTTGTGATGAAGAAGAAGAAGAAGAAATTGATGATACTGAAGAAATATCTATTGAAAATGAACCTATTAATGTAAAAGGCATTGCCACATCAAAGGAGATAACAGACTTCTGTCAGACACATTTTTGTGATGAAGAAGAACGAGAAGAAGAAGAAGAAATTGATGATACTGAAGAAATATCTATCGAAAATGAACCTATTAATGTAAAAAGCATTGCCACATCAAAGGAGATAACAGACGACCGTCAGACACATTTTTGTAATGAAGAAAAGGTCAAAAGAATGAATGACACAAATAAAATATCGAATGTTAAGGAACCATCTAACTTAGAAAGCAACGGCGCATCAATGGAAACCACAGACTCAGTAGGTTACGATGACACAAAAGAACATGAGAAAACGGAAAAATTATATCCTTGCCATATATGCCATATACCATTTTCACTTATAAACTTGCAAAATCACATGCTCAACCATACATTTAAAAGCTTTGCTTGCAAAGAGTGCAATAAATCATTCGCAACATATAGATCTTTGAACGCACACATGCCAGTTCACAAGCTTATGAGTGACTTGTTGAGTAAATCTGTCCGGGATAAATCTGATTTGCACAAACATGAAACATCAGTCCACAAGAGCCCCATGCTTactggcgacaagaagGTTCCGACAATCGCTCAGCTGATTCCTATCCTAGAAGGCCTGGATCCTCCAGAAACGAAAGTCAGCAAACTAAAAAAACTGATACCAATTTACGACGAACTCAACCGATGGAGGTTAAACAACAAAAAACGATTGGTAGAAATAATCCCGTTGAAAAAGAAAGTCAAGCCTCTAGCGTTCATTTTGCCAGGAAGCAGCCCTTACGTTAATAAATTGAAGAAACCCACTGGATCTGATGAAGATTCTGATGAGGCTACAGTAGAATCTACTGACAGCGGAGAAGCGATACACAAAAACACTACACATCAATCACATATCGAAAGGCATACACATAAACCAGAAGAACACAAATCACATAGTTCGCACAGTTCACATAAATCACACTCCCGCACACACAAAACTGATACCTCAGCCACTCATACAGCATCCGAAGAGAACAAAAGTAAAAATAGCGCCACTAACAACATCCTCTCACTCAGAAATGTTGAAGAACTCCCTGAAGATGTTAGTGATTCAGATTATAACGAATCTAGTTCTGGTTCAAAAGAGTTCGAATCTAATGAATCTGAGTCTGCTTCAAATGTATCTAATGAATCAGATTCAAATGTTCATAAGTTAGAGTCGAGTGGATCTAACTCTGGATCAAAACCTGATTTAGTGATTACTGCAACTGAGTCTGGATACTCTTCTTCAAGGTCGAGTAAGGACGATTCAAATTCCAAGCCCAGTGAAGCCATCATAGGCTCTGAAGATTCAGAGCCTAGAGAAACAGATTTAGAATCCGACATCGATTCAGACTCTAGTAAATCCGCCATAGAAACAAATACTGAGTCCAGTGAATCTAGTGTAACCACAGATTCTAATGATGTATCAAGAAGAATTGACTATGATTCAGATTCCAACTCTGAACATGAGTCCATTCAGGCTAATTCAGAGTCTGTTGGACCTGACGCAGTATTATCCAGTGAATCTTACTCAGAATCAGATTCAAACTCTCAATCTGAAGATTCAAACTCTGAGTTAAATAGTTCCTCATCAGAATCTACAGAGTCTGAAATCTCTAATTCAGAGTCCAGTCAATCTAACTCGCCTAATGATAGCAGAGAAGTTGCGACGAACATGATGACAAAAGATCAAAAAAATCATATTGATTCTAACGAGGCAGAAAAACTAGCAGTAGGTATTAGGCGCTCATATAGACACCATAAAAATGATGATGAAGACGAATCGATAGACACTACGGTCACGGATAATCAATTAACTGAAAATTATGATTATCAGTTTAACGCTAATGATGACAATACAGTACATCAGCCAGCATACACAAAGCATATGCTTGATAGATTTCACGGAAATTACAATGATGTAAAAGAACTTGGAATAGAAAACACTAACTCGGTTAAACAACACCACGAAAACGGTAAAGAGTCTAATGGTATTACAGATGAATTCAATGAAGTAGACGAGCCTATAGTTGCAATAAAACATGTAAGTCACCACAAAATTTATGCGTCTAATAATGGTGATAATGACGATGAGGCTAAAGATAGTGATGATTCTAAAAACACCGCAGAACCCATAGACCCGAGGCACATAACTAAAAAACACCACGGAACCACAGCGCACATAAACAATCAACATCACAAAAATGACAATCAAGAGATTGATGAAGAATCCACTACATCTATAGCCAAGAAGCATCATGAACACCACCATCATGGATATGATGATAATATAGCTGATGATACATTAGTTACCTCAAAGCACATTGCCAATCATAAAATATATGATTTTGATGAAATTGATGAATCAGGAGACGGCACAAAGTCCATAGACAATAAACATGACGAAGATTACGATAAATACGAATCTGTAGTACCTAGCAATGAAAATTATGTTTTATCTGATGAAACAGACGATGCCTTAGTCGCAACCACGCGCATGGACAATATACATCTTGAAAACTATGACAGTAAATCCAGTAATGATGATGAGTCTAAAGTTGATGAATTTACTGATTATAGTAGTGATGGTGATCAAACTAATGATGACAACGAAGTTTATGATGATAACGAATCCTATAAGGTAGTCAAGGCTACTGAAATGAATGATTTGGTCGCCGCTATGCAAATTATTGACAGATATCCTCGAATCGATCATGGAAAAGAATTAGTAGCTTCCATTACTCACACGACCAAGACACATCATAAAGTTGATAATAATGAACCTAAAACTGGTAACGAATCTAATGATCGTGAATATAATGAGCTTAACGATAATAATGAAACAAATGCTAACGAATCTAATGATTATGGGTCTATTGATGACGAGCTTATAGAGTCCGATGAGTCAGTAGCAGATACTCAGCAGATTGAAAAGAAACATCACGAAAATCGTGACATTGAGTTGAAAAAAGATGACAAAGCTGATGAATCTGATGTTTCTAATTATGTAGATGAGTCTAAAACTGCTGAAATAAATTATAGCAATGAGCCTAAAAATGAATTTGACAATGATTCTAATGATAAAACTTCTACTGACAACGAGTTTGGTAATAAAGACATACTAAAAAGAGATAAATTGATAGCCGCTACTAAACATATCACTAAAAACCATGTTGTCAGTGAGACTAAAGATAAGCATGTCGCTAAATATGATGAGTCTAAAGATACCTATCCTTACGAAGAAACTAGTGACGATAAAGGTCCCAATCACGTTGAAAAGTTATATGAAGTAAAGAAGCCAGTATTTAGTAGACATATGATGACTGAACATGACATGAAATTGGAAAACCTGTCAGATAATTCAGAATTATGCAAAATTCTGCGTAGAGCTTTGCCTACGCTTAAAAAATCTGATGCTAGACAAGAGAAGAAAAAATACATACTATCTTTTATATTCAACCGATAA
- Protein Sequence
- MSTPVCRVCLVGNRRMNTIENIELRKTLIKLKETEFATQTVMMCYICYSSLQRCHTFSEMVYRSDLILTDLYNKGFEVTQEILSMLSIDTISTIPKLTRSTVKYMSIDDSDSTGDHINIKEEISDDEEAVKMEEMVVFNGPKLLNGPKTFNDDAEIIKLEEIDVLNGTDSEELLNDDKTFKLEGSVTSTLMADLIYCDVRNNKLNSREKPYSCHVCHMSFKVKYNLQTHMLKHTTKVFACKECHKTFTQYGYLNLHMRIHTGENPSCDLCNKSFCNKYVLRKHRRTHTGEKPFSCEICAKTFTENGSLIKHMKIHIGKRFACDKCSKTFSQKNTLNIHKSTHSEEKPAIEQSIYVCGICKKTFTRQANLRIHMRCHTGEKPYACNKCSKRFDRKTNLQIHMKSHIEKKQYMCNQCHKMFNRSINLKYHMKTHTNDKPYVCNQCSKAFSLPIYLQRHLLTHAKVKAYACNQCDKTYTVKNSLHKHIKSHASKSFTHTCDRCAKVFTDNSSLQRHMLIHTGEKPFACDQCDKLFARKFQLKEHTRVHTGEKPYACNLCNKSFTQSSSLGFHKRIHTGQRPYICDVCDKTFTDKYSLQKHMRIHTGEKPYACDRCAQSFTYNSSLHDHMRRFHTGEKRCHTFSEMVQKSDIILNTLFDEGFEPTQESLRFTNIDTLLPIPNLSVSEVTYLSTDHCDNTTDILNTVDIHNSIEEEISNNELHSIEGSVKSMRSIDSDNYGEKKSDTEHGADMMCYICYSYLKRCYTFSQMVQRSDVILKTLIDEGFEATQESLTNIDTIETLPILSVSTITYMSTDVCDNTMSTVKQESIFGDKQMMEVDIGMDGLDYTDDEEISIKNELFNVQSVATSKETTDSATQESLSFVDIDTIVALPILSVSAVTHMSTDVFDNPTEIIKQELADDNDTIENNSLDSGKSVCRNDRQMPCLREEEEISDTEEISIENEPINVKVIATSKEITDDCQTHFCDEEEEEEEEEEIDDTEEISIENEPINVKVIATSKEITDDCQTHFCDEEEEEEIDDTEEISIENEPINVKGIATSKEITDFCQTHFCDEEEREEEEEIDDTEEISIENEPINVKSIATSKEITDDRQTHFCNEEKVKRMNDTNKISNVKEPSNLESNGASMETTDSVGYDDTKEHEKTEKLYPCHICHIPFSLINLQNHMLNHTFKSFACKECNKSFATYRSLNAHMPVHKLMSDLLSKSVRDKSDLHKHETSVHKSPMLTGDKKVPTIAQLIPILEGLDPPETKVSKLKKLIPIYDELNRWRLNNKKRLVEIIPLKKKVKPLAFILPGSSPYVNKLKKPTGSDEDSDEATVESTDSGEAIHKNTTHQSHIERHTHKPEEHKSHSSHSSHKSHSRTHKTDTSATHTASEENKSKNSATNNILSLRNVEELPEDVSDSDYNESSSGSKEFESNESESASNVSNESDSNVHKLESSGSNSGSKPDLVITATESGYSSSRSSKDDSNSKPSEAIIGSEDSEPRETDLESDIDSDSSKSAIETNTESSESSVTTDSNDVSRRIDYDSDSNSEHESIQANSESVGPDAVLSSESYSESDSNSQSEDSNSELNSSSSESTESEISNSESSQSNSPNDSREVATNMMTKDQKNHIDSNEAEKLAVGIRRSYRHHKNDDEDESIDTTVTDNQLTENYDYQFNANDDNTVHQPAYTKHMLDRFHGNYNDVKELGIENTNSVKQHHENGKESNGITDEFNEVDEPIVAIKHVSHHKIYASNNGDNDDEAKDSDDSKNTAEPIDPRHITKKHHGTTAHINNQHHKNDNQEIDEESTTSIAKKHHEHHHHGYDDNIADDTLVTSKHIANHKIYDFDEIDESGDGTKSIDNKHDEDYDKYESVVPSNENYVLSDETDDALVATTRMDNIHLENYDSKSSNDDESKVDEFTDYSSDGDQTNDDNEVYDDNESYKVVKATEMNDLVAAMQIIDRYPRIDHGKELVASITHTTKTHHKVDNNEPKTGNESNDREYNELNDNNETNANESNDYGSIDDELIESDESVADTQQIEKKHHENRDIELKKDDKADESDVSNYVDESKTAEINYSNEPKNEFDNDSNDKTSTDNEFGNKDILKRDKLIAATKHITKNHVVSETKDKHVAKYDESKDTYPYEETSDDKGPNHVEKLYEVKKPVFSRHMMTEHDMKLENLSDNSELCKILRRALPTLKKSDARQEKKKYILSFIFNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -