Gpyr017491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gandaritis pyraliata
Gene Symbol
-
Assembly
GCA_947859175.1
Location
OX401875.1:957551-966099[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.013 0.75 10.6 0.9 3 23 231 251 229 251 0.97
2 31 1.6e-06 9.5e-05 22.9 0.3 1 23 257 279 257 279 0.96
3 31 4.4e-06 0.00026 21.5 0.6 2 23 286 307 285 307 0.96
4 31 0.001 0.06 14.0 4.8 1 23 313 336 313 336 0.95
5 31 0.00031 0.018 15.7 1.8 1 23 342 364 342 364 0.98
6 31 1.4e-06 7.9e-05 23.1 2.4 1 23 369 391 369 391 0.98
7 31 0.00026 0.015 15.9 3.0 1 23 397 419 397 419 0.96
8 31 9.2e-06 0.00054 20.5 0.8 1 23 424 446 424 446 0.97
9 31 1.7e-05 0.00097 19.7 2.0 2 23 460 481 459 481 0.95
10 31 1.5e-07 8.8e-06 26.1 4.1 1 23 487 509 487 509 0.98
11 31 2.6e-06 0.00015 22.2 0.3 1 23 515 537 515 537 0.98
12 31 1.5e-05 0.0009 19.8 0.5 1 23 543 565 543 565 0.98
13 31 2.9e-05 0.0017 18.9 1.8 1 23 571 593 571 593 0.98
14 31 1.6e-06 9.3e-05 22.9 3.1 1 23 599 621 599 621 0.99
15 31 5.8 3.4e+02 2.2 0.1 1 11 627 637 627 643 0.86
16 31 0.0049 0.29 11.9 1.1 3 23 717 737 715 737 0.97
17 31 1.1e-07 6.5e-06 26.5 0.4 1 23 743 765 743 765 0.98
18 31 2.8e-06 0.00016 22.1 0.6 2 23 772 793 771 793 0.96
19 31 0.00014 0.0082 16.8 3.2 1 23 799 821 799 821 0.97
20 31 5.5e-05 0.0032 18.0 0.4 2 23 827 849 826 849 0.95
21 31 0.0006 0.035 14.8 1.5 1 23 855 877 855 877 0.97
22 31 2.4e-07 1.4e-05 25.5 1.1 1 23 883 905 883 905 0.97
23 31 7.1e-06 0.00041 20.8 2.1 1 23 911 933 911 933 0.98
24 31 2.1e-05 0.0012 19.4 0.3 1 23 939 961 939 961 0.97
25 31 1.5e-05 0.00088 19.8 2.7 2 23 975 996 974 996 0.95
26 31 5e-08 2.9e-06 27.6 4.1 1 23 1002 1024 1002 1024 0.98
27 31 2.6e-06 0.00015 22.2 0.3 1 23 1030 1052 1030 1052 0.98
28 31 1.5e-05 0.0009 19.8 0.5 1 23 1058 1080 1058 1080 0.98
29 31 7e-05 0.004 17.7 0.9 1 23 1086 1108 1086 1108 0.98
30 31 6e-06 0.00035 21.1 2.9 1 23 1114 1136 1114 1136 0.99
31 31 0.00039 0.023 15.4 0.2 1 20 1142 1161 1142 1162 0.94

Sequence Information

Coding Sequence
ATGTCTGCTACGCCTGTGTGCAGAGTTTGTTTACTGGACAATGTTAGAATGCAGTCCATCCGCAGTACACAGCTTCAAGATATATTCGAATTACTTGCTAATAGTAAGCTTATTTCAGAAGATGGAAGACCTGAAACAATTTGTTACATATGCTACTCTCAGTTGCAAAAATGCCATAAATTCATGCAAGTGTCTCGGAAAGCTGAAAGTATACTCACACAACTACTTTGTAATGGCTTGCAGGTTACGCAAGAAGCTGTTTCTATAATGAATGGTGGGTCGCCACTTTTATTCAATCTCACAACACAGTCTGTATCTTTCTACGATTTACTTTATGATAATACAGATGGTGTCAAAGAAGAGATAGACCATGCAGTAGAGTTTGATGATGAATGTTCACATGGAGATGTCAAGCTGGACTTAGCTGAAGGTCTTTGTGCGGCAAATAAAGATCTAGCTAATGAAATAAAAGCCGAATACACAGAACGACACGGAAACCCAATTTATGTACAATCCAATAATGTGAAAGAGGAAGTACCGGTTACTAGTCAGTGCAATACTTCGTTAACACAAGCTACGAAACCGAGAAGAGTAGGTTCAGTAAAGAAGATAAAAAGTAGGATTCATTACAGAGAAaaaaatcgtgtaaaaacacgacacaagggacaaactcctaaaaacccgttggcttgtaacttttgcgataagatattatcagatacgtatgtcttacatcaacacgtcagaacccacattggagaaaaaccatatctttgcaccatttgtggaaaatcatattcggataaaggtgtcctaaaacgccacatcaaaattcattcaggagaaagaccttgtatttgcggagtttgcggtaaatcgtttcctgaaaacagtgacgtaaaaaaacacatgagaatacacaccggtgaaaagccttttgcttgtcgtgtgtgcgataagaaattttatgtaaaccatcacttgagaagacacgttagcagaatgcatgacagagtcaaaccgtttgtgtgtgaattctgtgataaaaaattttacgaaaataatagattgcagagccatatcaaaatgcacaatgaaaagccatttgtctgtgataaatgcaaaaaagctttctctgacaaatgtaacttgatcattcacataaggcgacacaccggagataaaccttatttatgtgaagtgtgccacaaaaagtttaccagtaacaacagattgaaaaaccacgcaagaattcatacagacgcaaagtttgcgtgtgacgcatgtgacaagatatttaccgtttcggaccacttaaaaaatcatatgaaaatccacaacgtgggaaggacaaaatctgatacggcatgcgcgtgtgcctgtgaccgatgcggtaaaacattcttcgataaaagtggcctaataaaacacttgagacttcacactggagaaaaaccatttgtatgtgacaagtgcgataagacgtttgccgataaatgtaatttaaaaaagcacatgagatctcacacaaaagaaaggccttatgcatgtgatatgtgcgataaatcatttgctgaaagtggcaacttaaaaacccataagcgagtgcataccggtgaaaagccattttcctgtgacgcatgtggaaaaggttttgcgcagtctaactcgttgaaaaagcaccttacaactcacaccggagaaaggcagttttcctgtgtcatttgccacaaaacttatacagcaaaaaatagcttgaatattcatatgagaattcacagtggggaaaagccgtattcatgcactatatgcagtaaatcattctacgatagtagtaccttgagtagacacaaaagaacgcacacgggagaaaaaccgtacacgtgcattgaatgcaataagtcttttaATCTAGCAAATGAAATAAAAGCCGAATACACAGAACGACACGGAAACCCAATTTATGTACAATCCAATAATGTGAAAGAGGAAGTACCGGTTACTAGTCAGTGCAATACTTCGTTATCACAAGCTACGAAACCGAGAAGAGTAGGTTCAGTAAAGAAGATAAAAAGTAGGATTCATTACAGAGAAaaaaatcgtgtaaaaacacgacacaagggacaaactcctaaaaacccgttggcttgtaacttttgcgataagatattatcagatacgtatgtcttacatcgacacgtcagaacccacattggagaaaaaccatatccttgcaccatttgtggaaaatcgtactcggataaatctgtcctaaaacgccacatcaaaattcattcaggagaaagaccttgtgtttgcggagtttgcggtaaatcgtttcctgaaaacagtgacgtaaaaaaacacatgagaatacacaccggtgaaaagccttttgtttgtcgtgtgtgcgataagaaattttatgaaaactatcaattaaaaaatcatatgcatggccacacaggagaaaggttggtatgcgaaatgtgcgatagatcattttccgaaaacctccaattgagaagacacattagcagaatgcatgccagagtcaaatcgtttgcgtgtgaattctgtgataagaaattttacgaaaataatagattgcaaagccatatcaaaatgcacaccgatgaaaagccatttgcctgtgataaatgcaaaaaagctttctctgacaaacgtaacctgatcattcacatgagacgacacaccggagataaaccttattcatgtgaagtgtgccacaaaaagtttaccagtaacaacgcattgagaaaccacgcaagaattcatacagacgcgaagttatttgcgtgtgacgcatgtgacaagatatttaccgtttcggactacttaaaaaatcatatgaaaatccacaacgtgggaaggacaaaatctgatacggcatgcgcgtgtgcctgtgaccgatgcggtaaaacattcttcgataaaagtggcctaacaaaacacttgagacttcacactggagaaaaaccatttgtatgtgacaagtgcgataagacgtttgccgataaatgtaatttaaaaaggcacatgagaactcacacagaagaaaggccttatgcatgtgatatgtgcgataaatcatttgctgaaagtggcaacttaaaaacccataagcgagtgcataccggtgaaaagccattttcctgtgacgcatgtggaaaaggttttgcgcagtctaactcgttgaaaaagcaccttacaactcacaccggagaaaggcagttttcctgtgtcatttgctacaaaacttatacagcaaaaaatagcttgaaaattcatatgagaattcacagtggggaaaagccgtattcatgcactatatgcagtaaatcattctacgagagtagttccttgagtagacacaaaagaacgcacacgggagaaaatccgtacacgtgcattgaatgcaataagtcttttagtaggaaagcttatttagaacaacatTTGGCGTTTTGCAAACGTCAATAG
Protein Sequence
MSATPVCRVCLLDNVRMQSIRSTQLQDIFELLANSKLISEDGRPETICYICYSQLQKCHKFMQVSRKAESILTQLLCNGLQVTQEAVSIMNGGSPLLFNLTTQSVSFYDLLYDNTDGVKEEIDHAVEFDDECSHGDVKLDLAEGLCAANKDLANEIKAEYTERHGNPIYVQSNNVKEEVPVTSQCNTSLTQATKPRRVGSVKKIKSRIHYREKNRVKTRHKGQTPKNPLACNFCDKILSDTYVLHQHVRTHIGEKPYLCTICGKSYSDKGVLKRHIKIHSGERPCICGVCGKSFPENSDVKKHMRIHTGEKPFACRVCDKKFYVNHHLRRHVSRMHDRVKPFVCEFCDKKFYENNRLQSHIKMHNEKPFVCDKCKKAFSDKCNLIIHIRRHTGDKPYLCEVCHKKFTSNNRLKNHARIHTDAKFACDACDKIFTVSDHLKNHMKIHNVGRTKSDTACACACDRCGKTFFDKSGLIKHLRLHTGEKPFVCDKCDKTFADKCNLKKHMRSHTKERPYACDMCDKSFAESGNLKTHKRVHTGEKPFSCDACGKGFAQSNSLKKHLTTHTGERQFSCVICHKTYTAKNSLNIHMRIHSGEKPYSCTICSKSFYDSSTLSRHKRTHTGEKPYTCIECNKSFNLANEIKAEYTERHGNPIYVQSNNVKEEVPVTSQCNTSLSQATKPRRVGSVKKIKSRIHYREKNRVKTRHKGQTPKNPLACNFCDKILSDTYVLHRHVRTHIGEKPYPCTICGKSYSDKSVLKRHIKIHSGERPCVCGVCGKSFPENSDVKKHMRIHTGEKPFVCRVCDKKFYENYQLKNHMHGHTGERLVCEMCDRSFSENLQLRRHISRMHARVKSFACEFCDKKFYENNRLQSHIKMHTDEKPFACDKCKKAFSDKRNLIIHMRRHTGDKPYSCEVCHKKFTSNNALRNHARIHTDAKLFACDACDKIFTVSDYLKNHMKIHNVGRTKSDTACACACDRCGKTFFDKSGLTKHLRLHTGEKPFVCDKCDKTFADKCNLKRHMRTHTEERPYACDMCDKSFAESGNLKTHKRVHTGEKPFSCDACGKGFAQSNSLKKHLTTHTGERQFSCVICYKTYTAKNSLKIHMRIHSGEKPYSCTICSKSFYESSSLSRHKRTHTGENPYTCIECNKSFSRKAYLEQHLAFCKRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-