Gmel022264.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292311.1:3823114-3829430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9 2.5e+02 2.9 1.7 1 20 190 208 190 210 0.77 2 11 0.038 2.5 9.2 3.3 1 23 221 244 221 244 0.93 3 11 2.9 1.9e+02 3.3 1.6 2 23 250 271 249 271 0.93 4 11 0.57 37 5.5 0.3 1 23 294 315 294 315 0.93 5 11 0.0016 0.1 13.5 0.7 2 23 374 395 373 395 0.96 6 11 0.0034 0.22 12.5 1.3 2 23 411 432 410 432 0.96 7 11 5.5e-06 0.00036 21.3 1.4 1 23 438 460 438 460 0.96 8 11 0.00011 0.007 17.2 1.1 1 23 465 488 465 488 0.94 9 11 0.00015 0.01 16.7 3.5 3 23 496 516 495 516 0.97 10 11 0.33 22 6.2 0.3 1 20 523 542 523 546 0.94 11 11 0.0053 0.35 11.9 0.1 3 23 555 576 554 576 0.96
Sequence Information
- Coding Sequence
- ATGTTGGTCCCAAAAAAaggaatacaaaaaatatttaaagaaacaagTGAAACCAAACAGGGTGCTGAGGTcgagaatttaaaaaaagaaattaaatattcaagcaGCGATAACAATACACAAGCACTAAATAAAGAATTGGAAGCTGTACTCAAAGTGGAttgtaaaagtattaaaaaatatgtccaTAAAGTATATACAAAAGTATCAGAATACAATGATGTCGTAAACACAAATGATATAGAcacaaataatgataataaattaaaaaataaaactctagAATTGAATGATTCTAGAATTGAAAATTTTGCCAAAGTGAAGATCAAGGAAGaagctgttgacactgaggagAATACATGTTTAGAATCAGATGATTATCTCACGAATGTATTTAAAGTGTCCGACGAGATCAAAATGGGTGGAAGCATTAAAATAGAAGTGAAACAAGAACCAGAAGATGAAGAGATTTATACAGATGATATAATCATTTTAAACAACAGTGACATTGCAGAAGACAAAGGTACAGTGCAAGAATTAGACGCAATTGGGACTAAGAAAAATCTGTACAAATGCAAGCATTGTTCTTACCAAGCGTCATACGATACGTACAAGGAAcatataagtaaatgtacaaagaatTCGAAACGGTCCAAAGTGTATAACTGCAGCAAATGCACCAAGAGTTTTGTATCGTTGAAAAGATATGTAATGCATTTGTGCGAGGAGCATAATGTTGGTGAATTGACTTGTGCTGTGTGTAATCATCGGGCGAATAATTACACTATGCTGATGACACATTTTAGTTATCACATTAGGCGGTTGATGGTCAAAGTGAAAACCTTAAATCAAGATAAGTATTGTACGGCCAACAGTGATTTTCAGTGTAAGAAGTGTAAGGACATAGTTACAGCGGACAACCTGTTCGTGCATTGGGAGTCACACTTCAAGATACGTGCGCCGGACAAGGTGCAGGCGAGCGACAACGCGGAGTCTTCGACGTCGTCCGGAGAGCCGGCTCAATTTTTAAACGGCTCGTTGGATGCTGCGACGCGGGAGAATCTTTTAACAGTTTTACAAATGGAAGTGCCCAACGCTTCTAACCGGATCAAGATAAAGACGTGCCCGTACTGCGAGCGCACTTTCGAGCGGTACTACGACTCGAAGCGGCACATCATCGAGCATCTGCTGTTGGACGCGTACGCGGGAATCATTGATAACAAGGGGCTCAAGTGCCAGATATGTTCGGACACGTTCGATAAGCGTGATttATATAAACAGCACATGAGGGACCACGCATCCATGCCGGTTTACCTGTGCGAGCTGTGCAACAAGGCCTTCAGTGACTCGAGCAACTTTAGCAAGCACAAGAAGGTCCACAACTTGTCCGTCTACAAATGCGACATTTGCGACAAGAAGTTTCAGATGAAGATCTCCCTGTCCAAGCATATAAGCGATACCCACAAAGATACCAAGCCGAATATATGTCAGTTTTGCAACAAAGTGTTCCACACCGACTCGAGCCTGAGAAAACATATAAGGCAACACGACAAAACACTGCTTAGATACCGCTGTCTGGCCTGCAACGAGAAGTTCAGCTCGCTGAAGGACAAGTGGGACCACATGTGGCAAGCGCACAAGCAGAGGACTCAAGCCGCCGACTGTCCCATCTGTGCCGAAGCTTTCAGAAAATATATAGATGTCAAGAAACATATAAGAGAGAAACACGGTCTGGACCCGTCCTATGTGAAGGTGCTGAACAGGTTCCCCTCGGCCAAAGTGGAAGGGTCACAGCCTTTGAGGGAGAAGATTAGAATGACGAAGGAACGTATATCGCTGTTAAGATACAATAATACGGTTTCGAAGTGA
- Protein Sequence
- MLVPKKGIQKIFKETSETKQGAEVENLKKEIKYSSSDNNTQALNKELEAVLKVDCKSIKKYVHKVYTKVSEYNDVVNTNDIDTNNDNKLKNKTLELNDSRIENFAKVKIKEEAVDTEENTCLESDDYLTNVFKVSDEIKMGGSIKIEVKQEPEDEEIYTDDIIILNNSDIAEDKGTVQELDAIGTKKNLYKCKHCSYQASYDTYKEHISKCTKNSKRSKVYNCSKCTKSFVSLKRYVMHLCEEHNVGELTCAVCNHRANNYTMLMTHFSYHIRRLMVKVKTLNQDKYCTANSDFQCKKCKDIVTADNLFVHWESHFKIRAPDKVQASDNAESSTSSGEPAQFLNGSLDAATRENLLTVLQMEVPNASNRIKIKTCPYCERTFERYYDSKRHIIEHLLLDAYAGIIDNKGLKCQICSDTFDKRDLYKQHMRDHASMPVYLCELCNKAFSDSSNFSKHKKVHNLSVYKCDICDKKFQMKISLSKHISDTHKDTKPNICQFCNKVFHTDSSLRKHIRQHDKTLLRYRCLACNEKFSSLKDKWDHMWQAHKQRTQAADCPICAEAFRKYIDVKKHIREKHGLDPSYVKVLNRFPSAKVEGSQPLREKIRMTKERISLLRYNNTVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -