Gmel021198.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292309.1:7506765-7510425[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3 2e+02 3.2 3.2 2 19 145 162 144 167 0.88 2 14 0.027 1.7 9.7 2.2 1 23 173 195 173 195 0.98 3 14 3.3 2.1e+02 3.1 1.2 2 21 202 221 201 222 0.91 4 14 0.048 3.1 8.9 0.4 3 21 225 243 224 244 0.93 5 14 0.071 4.7 8.3 1.7 2 23 287 309 286 309 0.91 6 14 0.98 64 4.7 1.9 2 23 316 337 311 337 0.90 7 14 0.022 1.4 9.9 2.5 1 23 343 365 343 365 0.98 8 14 6.4e-06 0.00042 21.1 0.3 1 20 369 388 369 390 0.96 9 14 0.00015 0.0098 16.7 0.4 2 23 413 434 412 434 0.93 10 14 0.0002 0.013 16.4 1.6 1 23 441 463 441 463 0.94 11 14 0.0003 0.02 15.8 2.5 2 23 470 491 469 491 0.97 12 14 5.5e-05 0.0036 18.1 3.5 1 23 497 519 497 519 0.98 13 14 0.00049 0.032 15.1 3.9 1 23 525 547 525 547 0.97 14 14 5e-05 0.0033 18.2 2.6 1 23 553 576 553 576 0.97
Sequence Information
- Coding Sequence
- atgagtgagaacgaaataatttattgtcgTTTTTGCGCTGAAACCGCAAATTCACTTCAATACATAGATCTGTCAATTGATTCACAAACAAGATCGAGCGTCGTGGAGAAATTAGCAGTTCTCAATTTAAATGAAGTCGATTTCAGCGATAAAACCTTACCAGAAACGATATGTTTATCTTGTTACGACATTTTCAAAGTCTCCTATGAATTTTTCACTAAAATCAAACTATCGCAGGTTGTGTTAAAAGAACGAGGTAACTTTTTCACTAGCGAAGCAACAGTTTTTGTAAAAGACGAAAATGGAGAAAACGAAGTGAAATCTcaagaaataagttttaataatgatTACGACACAAACTGTTACATTGAGGACGACAAATGTGATACAGAAATAGAGAAATGCAACGTTTCATGGGCTTCTTATGGTGTTTCTTGTAAATTTTGTGGCGTGGAATGTTCAAGTGTAACAGAATTGAGAGAGCACTGTAAAGAGACGCATAGTACCTGCTGTGGATTCCAGTGTAGTGATTGTCATAGTAACTTTGAAGATTTTACCACATTTGTCGAGCATGTGAGAGAACATAGGAAGGAGTTAATtGATTATTGTCAACACTgcaatatgaaaataaaccaaATCGACCACACAAAGACACATATCTTACAACCGAACTGCCAGTTTTGTGGCGAAATATTCCAAAATGAGATTTCTTTAACTAATCACCATAATTTATACCAGAATCTACCGAAAAAGTTGAGTAAACACAAAATATCAGAGTTGAAAGAGCTATTGTCATATGGATTAGAAATATATGAGGTGGACAAATTAGAAATTGTTCTCTGGAAGGACTACATATGGATATGTCAGTACTGTAGTACAAGATTTTCCAATCAGGATGTGCTTAGGTGTCACGTGAAGAATGTTCACGGAAAATGCTTTGGGAATAAATGCATTGATTGTGACGAGATTTGTAAATCATTTGATGGTTTTATTGAACATGTGAGACTACATAGACCATTGTTAAGGTACTGCTGTCAATACTGCAATGCCAAATTTGATGATCAGCAATTGACAATAATCCACACTAATACACATTTACAGTCATTCCAATGTGAGACTTGCGGTGAATCATTTAACAGCAAATTTGATTTACAACGCCATTTGACTGCATACggtaaaaaaactaaaagaataCCATTCAAGAGTCGCGAAAAACCGATCAGCATTGAAGATCTAACGTGCGACATATGTCGGAAAGTGACGAAGAGTTTATCAAATCTGCGGGCGCACAGAGTGTTACACACAGACAGAAACAGAGACTACACATGTGACAGATGCGGCAAGACGTTCTTCACGAAAGGTGCTCTGTACACGCACTCGTTCATACACCAAAATGTAGAGCCGCAGGTCTGCAAGGTCTGCAAAAAGACATTCCTTACCTTGAGTCGTTTGAAGAAACACATAAAAACCCATTACGAGGACAAGCCGTTCGAATGCAATTTGTGTTTTAAGAGGTTCAGATTGAAGGACCATTTGAAAGGGCACATGATTACACACACAGACCTACTGCCGTACTCATGTCAGTATTGCAACAAAGGGTTCAGACATAAAAACGTGTTGAAAACACACGAAAACCTGCATACAGGTGCCAAGCCGTTCTCTTGCACTGTATGCGGCATGGAGTTTGCGAATTGGTCCAACTGTAATAAACATATGAAAAGAAAGCACGGCGCGACGTTGGCGAAGAACGTGCTGACTCCACAAGGGAAGGTACCCATAAATCAGAAGACAGGGAAACCGAAGAAGATCAAGGATTTGGAGACGGTGCGGGAGTGGACCGAGCAGATTTTGGTGCCGTGCAAGAGAGGGAAAAAGAGTGGACAAGAGAAGGGTACTCTCGCTTga
- Protein Sequence
- MSENEIIYCRFCAETANSLQYIDLSIDSQTRSSVVEKLAVLNLNEVDFSDKTLPETICLSCYDIFKVSYEFFTKIKLSQVVLKERGNFFTSEATVFVKDENGENEVKSQEISFNNDYDTNCYIEDDKCDTEIEKCNVSWASYGVSCKFCGVECSSVTELREHCKETHSTCCGFQCSDCHSNFEDFTTFVEHVREHRKELIDYCQHCNMKINQIDHTKTHILQPNCQFCGEIFQNEISLTNHHNLYQNLPKKLSKHKISELKELLSYGLEIYEVDKLEIVLWKDYIWICQYCSTRFSNQDVLRCHVKNVHGKCFGNKCIDCDEICKSFDGFIEHVRLHRPLLRYCCQYCNAKFDDQQLTIIHTNTHLQSFQCETCGESFNSKFDLQRHLTAYGKKTKRIPFKSREKPISIEDLTCDICRKVTKSLSNLRAHRVLHTDRNRDYTCDRCGKTFFTKGALYTHSFIHQNVEPQVCKVCKKTFLTLSRLKKHIKTHYEDKPFECNLCFKRFRLKDHLKGHMITHTDLLPYSCQYCNKGFRHKNVLKTHENLHTGAKPFSCTVCGMEFANWSNCNKHMKRKHGATLAKNVLTPQGKVPINQKTGKPKKIKDLETVREWTEQILVPCKRGKKSGQEKGTLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -