Gmel020694.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292308.1:9388303-9391077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0017 0.11 13.5 4.8 1 23 164 187 164 187 0.97 2 17 0.00031 0.021 15.7 0.9 1 23 196 219 196 219 0.96 3 17 0.035 2.3 9.3 0.8 2 23 232 254 232 254 0.97 4 17 0.00051 0.033 15.1 1.0 1 23 263 286 263 286 0.96 5 17 0.00016 0.01 16.7 1.3 1 23 298 321 298 321 0.96 6 17 4.8e-05 0.0032 18.3 1.2 1 23 349 372 349 372 0.98 7 17 0.0015 0.097 13.6 1.2 2 23 382 404 381 404 0.96 8 17 0.082 5.3 8.1 1.3 3 19 410 426 408 429 0.92 9 17 0.00094 0.061 14.2 0.5 2 21 434 453 433 456 0.94 10 17 0.28 18 6.5 2.3 3 23 466 487 465 487 0.93 11 17 0.00025 0.016 16.1 3.6 1 23 492 515 492 515 0.93 12 17 0.085 5.5 8.1 1.3 2 23 527 549 526 549 0.96 13 17 0.0083 0.54 11.3 1.3 1 23 572 595 572 596 0.92 14 17 0.43 28 5.9 0.2 2 23 602 623 601 623 0.91 15 17 0.0011 0.07 14.1 2.1 2 23 630 651 629 651 0.97 16 17 0.011 0.69 10.9 0.2 1 23 717 739 717 739 0.97 17 17 0.21 14 6.9 2.0 1 23 745 768 745 768 0.96
Sequence Information
- Coding Sequence
- ATGTCTATAAAAGAAGAAGAGcctgatataaaaattaaaattaaagtcgAGGATGGTGCTCGTAGCCCTAAAAGGAAGGATCCCACTTCTTTCTTGCCAGACGAACCAATGACTTATGAGATCAaacagaagaagaagaagaagaaaaagaaacatCAAGAGGATCCATTTAAAGATATAGACGAGAAGGCGCCAGTGACTATAACCAGAGATATCAGTGCCAGTGAGAATGAAGTAGTTCCCCCTGTGGATATAAAGTTAGATCCAGAGGTTAATATTAAGGTTGAGAATATTGAGGTGGAGTTAGATTTTAATGATTTTGCTAACAATGGAAGCTTAATGGTAGAAGGTCCTCAAAGTGAAGACAGTCAGGAGCCAGAGGTGAAAATTGAGCAGCAGAACCATGAAGCGGTGCTGCTGACCTTCGAAAGTATAATCAATGACAAATCTGTATTCGGATACAGTCAGGGTGTGGAATCTGCCCCATCCCACGTATGCAAAGTGTGTCATCTAGTCTTTCAATCGCCCAAAACCCTACGCATGCATCAAAAGAGAAAGCACAAAgtgtttagaaaatattttaagcatATATGTGATTACTGTGGAATGTCCTATGAAATGAAGAATAGTCTAGTCGCGCATATTAAAAGGAAACACGGGCCGAATGCAATACCTGACGATAGTGAGGAGCGGACATGTGATGTCTGCGCATTAGTTTTCAAAGGTATGACCAGGCTACGGATGCATATGAGAAGGAAACATGGCTCCTTTGAGGAGTCCTTCAAGCACATATGCGAGGAGTGTGGCCTAACCTACGACAAGTACAGAAGTCTAATAGTACATATGCAGAGAAAACACTCCACTATAAAGAAGCCCATAGTCGAACAGTGGTTCAACTGTCCGTTTTGCCCGAAGATTTTCAGTAAACGGGAGACTTACGCGCGCCACGTCCAAAGGAAGCACAAAGTGCCGGACGAGGACGGCGTCAAAGAAGAAGTGAAGGAGGGAGCATTAGAAAACTCTATGAATGAGAAAACAGGTGAGTTCACTTGCAAAGAGTGCCCTTTAGTTTTCTCTTCAATTAATTTCCTCAAACTACACATGAGGAGGAAGCACAACGCTTTAAAGGAAGATTTTAGACTTAAGTGTAGGATTTGTAATTTGTCATACGATAAAATTGAGAGCCTGAAAAGGCACGTACGAAGAAAACACGACAAAGGCTCACACTGTGAAGTGTGCAATAAGCAATTTGATACAAGGGAACTCTATCTGAACCATTCCCACGTGAAGGCGATCAAGGAATGTTCTATTTGCGGGTTGATATTCGCTTCCCAGGGCGGTCTCGCTAAGCATTTAAGGTGCACGCACAAGTTGGACTTACCCAAGACTGTCTTTTGTAATATGTGCAATGAAGGTTTCCATGATAAGAGGCAACTCAAACCTCACTTCATGAAAGTGCACCTGAACGTGTCCTACACTTGTAAATACTGTAAAAAGGTGTTTAAAGCGAAAGAGAGTTACCGGCGGCACGTGCTGTTCAAGCATCCAGTGAGCAATTTGACCCATAGTCAAATGCAAAAATGTGAACAATGTCCCGCAACGTTCCTCGACGAGTTCGAGTTGTGCCGTCACTTTAACACCGCGCACAGGATACGGGATCCGTCTGAGCCGTATTTCGATGTGAAAAAGGAGGAATTAGATATAAAAGACCCCTTTCAATGCACAAAATGCTCCGAGTCGTATCCTGCATGGGATCAACTGAGGTTACACTTCGAGCAGAATCACCATCTGTCTGAAGATACACAGTGCCAGATTTGTGGTGAAATATTGCCAACTAGTAAACTGCAGATGCATATAAAGAATCAGCACACAGACGTCGAAGTTGTTAGATGTAAGTACTGCCAATTCACGACCACAAACCGAGCGAGTATGACCCAGCATATGTTGCGGCATAAGAATGCGACAACGCTGCACTGTGATTACTCTGGGTGTCGCTATAAAACGTACTATGAAGGTGCTATggagaagcacaagcagaaacACGCCGATCAGGGTGTCAAGTTGCAATGCACGAAGTGTCCATTCCAAACTATGAACAAGTACATCCTGAAATACCATGAGGAAGCGCATATGACGGGAAAGAAGAGGTATACGTGCGACCAGTGCGACTATGCCACCATATTGCCAGCGAATTTAGTCCAACATAAATATAAGCATTCCGCAGAGAAACGATTCAAGTGCGAGGTGTGCCCGTTCGCGACCAAGTACAACACTTCGTTGCGGTTCCACGTCAAAAAGAAACACTGTGATCTCCCAACTATCAGCTGA
- Protein Sequence
- MSIKEEEPDIKIKIKVEDGARSPKRKDPTSFLPDEPMTYEIKQKKKKKKKKHQEDPFKDIDEKAPVTITRDISASENEVVPPVDIKLDPEVNIKVENIEVELDFNDFANNGSLMVEGPQSEDSQEPEVKIEQQNHEAVLLTFESIINDKSVFGYSQGVESAPSHVCKVCHLVFQSPKTLRMHQKRKHKVFRKYFKHICDYCGMSYEMKNSLVAHIKRKHGPNAIPDDSEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHICEECGLTYDKYRSLIVHMQRKHSTIKKPIVEQWFNCPFCPKIFSKRETYARHVQRKHKVPDEDGVKEEVKEGALENSMNEKTGEFTCKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTRELYLNHSHVKAIKECSICGLIFASQGGLAKHLRCTHKLDLPKTVFCNMCNEGFHDKRQLKPHFMKVHLNVSYTCKYCKKVFKAKESYRRHVLFKHPVSNLTHSQMQKCEQCPATFLDEFELCRHFNTAHRIRDPSEPYFDVKKEELDIKDPFQCTKCSESYPAWDQLRLHFEQNHHLSEDTQCQICGEILPTSKLQMHIKNQHTDVEVVRCKYCQFTTTNRASMTQHMLRHKNATTLHCDYSGCRYKTYYEGAMEKHKQKHADQGVKLQCTKCPFQTMNKYILKYHEEAHMTGKKRYTCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00008258;
- 90% Identity
- -
- 80% Identity
- -