Gmel021951.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292310.1:7077838-7082122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00017 0.011 16.6 0.7 2 21 117 136 116 137 0.93 2 18 0.025 1.7 9.7 5.1 1 23 168 190 168 191 0.92 3 18 1.6e-05 0.001 19.8 0.1 1 23 196 218 196 218 0.98 4 18 0.69 45 5.2 7.4 1 21 221 241 221 242 0.95 5 18 0.001 0.066 14.1 0.6 1 23 256 279 256 279 0.95 6 18 2.8e-05 0.0018 19.0 1.0 1 23 285 307 285 307 0.98 7 18 3 2e+02 3.2 0.2 5 23 317 335 315 335 0.95 8 18 0.04 2.6 9.1 0.7 1 23 341 364 341 364 0.93 9 18 6.2e-05 0.004 18.0 0.4 2 20 487 505 486 507 0.93 10 18 0.44 28 5.9 0.1 3 23 514 535 513 535 0.95 11 18 0.0072 0.47 11.5 0.1 3 23 542 563 541 563 0.95 12 18 2.4e-05 0.0016 19.3 0.5 2 23 569 590 568 590 0.96 13 18 0.06 3.9 8.6 1.9 2 20 594 612 594 614 0.93 14 18 1e-06 6.7e-05 23.6 0.5 1 23 640 663 640 663 0.95 15 18 0.00088 0.058 14.3 1.3 1 23 669 691 669 691 0.95 16 18 0.022 1.4 9.9 0.1 1 23 697 719 697 719 0.98 17 18 0.12 8 7.6 0.6 1 23 725 748 725 748 0.83 18 18 0.00035 0.023 15.6 1.0 2 23 755 777 754 777 0.95
Sequence Information
- Coding Sequence
- ATGCCGTGGTTTCAGATGGAGGAGCAGCCAGGACTGCCGAAGGGGATATGCCGAGGGTGCACCGCTCACACCATAGCTGCAATAAGCTTCAAAGACCTTTGCAACACATCCAAAAGACTATGGAACGACGCTGCCGACTACCTGTCGCTTATAGACGGCGCGACAGACGAGGACAAAGCGTTTTATGTGTTCTACAACGCAGACAGAACGTTAATCAGAGATCAGACAGAAAGAGTGAGCTCAAAAGAGCGAGCGGTGCAGAAATTGAACACAAAATTCCTGACGGATAAGAAAAAGAAGCCTTACGCACCACGAGTTAAAAGATCCAATGGCGTCGTAGTGCCTTGCCGTTGTTCAGATTGCGGCAAACGGTTCTCCGACCCCGTTTACATGAATCTCCATCTAATGAATACAAGCAAAAGAATATGTACGGAGTGTTACATGATCATACCCAAAACGAAGCTGGCGCAGCACCTCGCTACAGCCCACGGGAAGTGGGTGCACGATTGCAAGATCTGCCATAAATTATTCGATACAAAAGACGGCTTGAGCCAACATGTCTTTGAACATCACGACGATAAAGGCTACCCGTGCAAGGTTTGCGGCATCAGTTTCGCCAACGAGAGAGCTCTGAGCGCGCACATGTACTCGCATTCACTGTTCCACTGCAACACGTGCAGGCGCAGTTTCGAGAACCGAAAATGTTATAAGTATCACCTAAAACAATGTTCGTTCCCCAAAGAGTCGTCTCAATACACCAAACAGTACATTTGCGATTATTGCAACAGTTCGTACACTAAAAAGCCTTCTCTACGCATTCACATAATCCAAAAACATTTGAATGTTCTTCCCTATATATGTCAGATTTGCGGTAAACGCACGTCCACGGTCGCACATTTGAAATCACACCAGAGTGTACACACGAACGTGAGGAAAATCTACGAATGCTACTGCGGTGCTAGGTTGCGGACAGAGTTAGGTTATAATTTACATCAGCGGATCCACACCGGCGAGCGACCGTACGAATGCAAGGAATGTGGCGAGAAGTTTCTATCGGCTTCCAGAAGGTTGGATCACATCAAACGCCGTCACCGTAGTACCCAAGAAATGCCGCACGGATGTGATAAGTGTCACGCTAGGTTCATGCTCGACGAATCGCTATGTCCCCACGGCGTCTGCGTTACGTGCGTCAACTCCGTGATCGCGGCGCAAATGTTCAAACTGTTCGTGAAGAGTTCCGAGAAAATATGGCAGAAAGCCTTAAACTCTTTAACCGAACTCCCAGACGCCACCAACCACATGGTCAAAACGTTATTCGGCATCGTCAAACCTGACACGTTAACCCTACACACGATGAAAGATTATAGTCCTTGCGACCCCAAGGATGTAGTGCATAGACTGAACAACAATCGGCCGGGAAGAAAAACCCCTAAATCCATCAGAGCCGGACCTCAGTGCGAGTGTCCAGACTGTGGGAAGAAATTCATGAGCCCATACTACCTGAATATGCACCTTATAAATAGTGGACAGAAGGAAGCCTGTTTAACATGTGGCGAAGTTCTATTCAGGGGCCGAGATTTACAGGACCACCTAAATTACGCGCACAACACAAATTCTATACTTTGTCAACAATGTCCACTATTATTCACCGACGAAGCCCAATTGAGAAAGCACGTAAAAGAGGCCCATTCGGTGGGCGCGCTCACTTGTGGGGATTGCGGCCGGTTCTTCACTAGGAAGGCGTCGTTCGAGGCACACTCACAAATGCACGCGGTGCGCACGTGTCGAAAATGCGGGATTCAGTTCAGCAATCGGGGCTGTTACAGAGAGCACAGGCTGCAGTGTGAGCCCGACGCTCGGCCGGACCCTCACGCGTTGCCCCGAAACAAACGCTCCAATATCCGGGACCCGGCGTTCTTCACTTGTGACTACTGCGGAAAGACGTACACTTCCAGACCGCAGTTGAAGAATCATATCTTATGGATACACATGGACGTGCGGCCGCATCAGTGCCAGTGGTGTGGGAAACGGTTTTACACGTCAACTCGTTTAGCTGAACACAGCATAGTCCATACAAGGGAGAGGAAATTCGAATGTGACATTTGTGGTGTGAAATTGGTGTCGAAAATGGCCGTCGTGTACCACAGACGACGCCACACCGGCGAGAAGCCGTACGAGTGTGAGGATTGCGGTGAAAAGTTCCTGTCGTCGTCGCGTAGGTCCGAGCACGCGAAGCGAAGACACGGTAAAGGTCTTAAAATTGAGTGCAAAGAGTGCCCCGCGAAGTTCGGCAGGACTCAGCAGCTGAAGAAACACATGACCAAGTTCCATAGTACACCGATGATAATTAAAGTGGAAAGCTGTTGA
- Protein Sequence
- MPWFQMEEQPGLPKGICRGCTAHTIAAISFKDLCNTSKRLWNDAADYLSLIDGATDEDKAFYVFYNADRTLIRDQTERVSSKERAVQKLNTKFLTDKKKKPYAPRVKRSNGVVVPCRCSDCGKRFSDPVYMNLHLMNTSKRICTECYMIIPKTKLAQHLATAHGKWVHDCKICHKLFDTKDGLSQHVFEHHDDKGYPCKVCGISFANERALSAHMYSHSLFHCNTCRRSFENRKCYKYHLKQCSFPKESSQYTKQYICDYCNSSYTKKPSLRIHIIQKHLNVLPYICQICGKRTSTVAHLKSHQSVHTNVRKIYECYCGARLRTELGYNLHQRIHTGERPYECKECGEKFLSASRRLDHIKRRHRSTQEMPHGCDKCHARFMLDESLCPHGVCVTCVNSVIAAQMFKLFVKSSEKIWQKALNSLTELPDATNHMVKTLFGIVKPDTLTLHTMKDYSPCDPKDVVHRLNNNRPGRKTPKSIRAGPQCECPDCGKKFMSPYYLNMHLINSGQKEACLTCGEVLFRGRDLQDHLNYAHNTNSILCQQCPLLFTDEAQLRKHVKEAHSVGALTCGDCGRFFTRKASFEAHSQMHAVRTCRKCGIQFSNRGCYREHRLQCEPDARPDPHALPRNKRSNIRDPAFFTCDYCGKTYTSRPQLKNHILWIHMDVRPHQCQWCGKRFYTSTRLAEHSIVHTRERKFECDICGVKLVSKMAVVYHRRRHTGEKPYECEDCGEKFLSSSRRSEHAKRRHGKGLKIECKECPAKFGRTQQLKKHMTKFHSTPMIIKVESC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -