Gmel022089.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292311.1:1390452-1392824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.5e-06 0.00042 21.0 3.1 1 23 10 33 10 33 0.95 2 20 0.002 0.13 13.2 2.2 2 23 39 61 38 61 0.94 3 20 6e-05 0.004 18.0 0.2 2 23 70 92 70 92 0.96 4 20 6.3e-05 0.0041 17.9 2.2 2 23 101 123 100 123 0.93 5 20 3.4e-05 0.0022 18.8 1.5 2 23 131 153 131 153 0.97 6 20 3.1e-06 0.0002 22.1 2.5 2 23 162 184 161 184 0.96 7 20 5.9e-07 3.8e-05 24.3 3.0 1 23 190 213 190 213 0.98 8 20 0.48 31 5.7 0.1 2 23 222 244 221 244 0.89 9 20 0.0018 0.12 13.4 0.3 1 23 262 285 262 285 0.97 10 20 0.00099 0.065 14.2 1.5 1 23 315 338 315 338 0.97 11 20 0.75 49 5.1 0.9 2 21 346 365 345 366 0.92 12 20 0.023 1.5 9.8 1.6 2 23 375 397 375 397 0.95 13 20 0.0062 0.4 11.7 7.0 1 23 418 441 418 441 0.97 14 20 3.9e-06 0.00025 21.8 0.6 2 23 448 470 447 470 0.96 15 20 3.5e-05 0.0023 18.8 2.2 2 23 477 499 476 499 0.94 16 20 0.0081 0.53 11.3 2.2 1 23 505 528 505 528 0.97 17 20 0.21 13 6.9 7.1 2 23 536 558 536 558 0.95 18 20 0.00029 0.019 15.8 0.5 1 23 565 588 565 588 0.97 19 20 0.038 2.5 9.2 4.0 1 22 595 616 595 618 0.89 20 20 0.019 1.2 10.1 2.7 3 23 633 654 632 654 0.91
Sequence Information
- Coding Sequence
- atgtCCATGTTTCAAAGCCAGTTAGACTTTGTCTGTGACTACTGCAGTCGGCCGTTTACAAGAAAATACAATCTACAAACACATATAGAGAATTGTCATTTGAATAGCTCTTGTTGTTGTGAGATTTGCGAGCAAAGATTCAAGAGTCCAGCTGGGCTTCAGCTTCATCTAACGAGAGGTCACAATCGTAATGGCGAACCGTACCCAGAGTGCGAGCTATGCGGTCGCATATTTACCaggaaacaaaatataatttcacaCATGCTCAGTGTTCATTTACAAGGTCTGATGCCCGATAAACAGTGCAATTTATGCTTTAAAACGTTCACCACAGAACGTAATTTGAAACGACATGTCTCACAGGTGCATAACCCAAACATTCAACATCCAACTTGCAACGAATGCGATAAAacatttataggcaaacacTCTTTAATTGAACATATTAAATCTACCCATGGCTGTTCTGAGAAAGATGCCATAAAATGTCACATGTGTGATAAAGAGTACACTAATAATAGGAACTTAAAAAGACATATTGAAATGTATCATGGTGAGAAAGGGGAGTACAGATGTGATATTTGTCCAAAAGTGTACACTTCCAATCAGAGTTTAAGGAGGCATCTGCGTACTTGTCATTGGATAGAAGATCAAGAGACTTTACAGTGCGGTTATTGTGAAAAATTGATACCGGGTAAAGAAAATTTAGAGACACATGTTACGTTCTATCACAGACAAGAGACGTATCTCTCTGATTATGATGTTGATAGGAAAACAGAAGAGTTCGCATGCAATACTTGTAATAATTCATACGAAGAGGAATCACTGCTACGGCAACATATAAAAATGGAGCATACAtttgatattttctataaatactgTAAAATGGCTCTTCTAAAACAAGTAGAGAAGAATGATAATAGCAAAATAAAGACTGTGTTTTATAAttgtgaattttgtaataatatgtttacaagTGTGTACGAATTTAAAGATCACATGAAAGTCAATCATGATAAAGAGTATTGCTTGTCGACGTGTAATGTTTGTTTCAATAAGTTCTACAGCAAGGATACAATGTCAGAGCACAAAAAGATATGTCTTCCACCGCCAAATGTGAACAGCTGTGGACACTGCGACAAGTTGTTCACAGATGTGAGCAGTTTAGAATTCCACACGAGAATATTTCATCCGCAAGCTCATATCGCCGATTCCAATATCACATCAACAAATGACGATATAGAAAACGCGTACAAATGCAAACATTGTAACAGAATCTACTACAGCGATAGGTCGTTAAAACACCATATTAAGTTGAAACACACAACAGACGAAGCTATGGAGTGCGAGTACTGTGGGAAAGTTTgcagcaataaatattatttggcaTCCCATATCAAGATAGTGCACACAAACAATTCCTGGTCCAAATGTGATTATTGTGATAAACAGTTCAAATCTAAACGAAATATCCGGAGGCACATTGAATACACACATTTAGGTATGCAACGGTATAAATGTATCGAATGTGAGACCCTGTTTAAAGAAAAGAGAAGTTTGAGAAAGCATGTTCGAACCAAACACCCGAATTCGGCAGCATTTCCACAATGTCATATATGCCACAAAAGGTTTGAATCGGCCAAATCCTGCAAGATACACTTGAAGTTACTCCATTCATTCAATATGAATACGCACCCTTGTGATCTGTGCTCGGTGTCCTTCAGCTCAAACGAAGCTCTAAGCATACATTTGCAAACGAAACATTTAGCCGAAGACGAGATATACAAATGTGAACATTGTAATTTAGTGTTCAAAGGGCTTGACAAATTCGAACAGCACAACGAACTATGTCACGTCAATTTAGTAccgaatataaaacaaaaggttCTGCCTCGATGTATTATCTGTATGAAAGACTTCAGTACTAGAAAAACTTTGAAGCGTCACATTAAAAAGTTTCACAACGAATTCGATGCGGACGAATTGGCCACATTCGGTTCTCGACACCGGGTGTTCAATGTCGAATGTGAGGACTGCATCAAAAACTTTCAGGACGACTTCTACTACAATATATATCAGAAATTGAAGCATTTACGCGATtcgataatatttaaatgcgAGAGTTGCACATCTACTTATAATTCGTTGGAATTCTCCATTCAGAGGTACAAGTTGAGTCATTATGACACGTGTAAAAGTAAAATGGTGCTGAGCGAGTTATGTACAGCGGAGATGAGCGACGAAGAGGCGTCGTACAGCGGATTTGGTTCTTTACACCAAATGTTGCCGGAGAGTACTACGAATGATGTGAAATTAGAGCCAAACGAATTTTTAACAGAGGGAGAAATTAAGACTGAACCCATGACaccataa
- Protein Sequence
- MSMFQSQLDFVCDYCSRPFTRKYNLQTHIENCHLNSSCCCEICEQRFKSPAGLQLHLTRGHNRNGEPYPECELCGRIFTRKQNIISHMLSVHLQGLMPDKQCNLCFKTFTTERNLKRHVSQVHNPNIQHPTCNECDKTFIGKHSLIEHIKSTHGCSEKDAIKCHMCDKEYTNNRNLKRHIEMYHGEKGEYRCDICPKVYTSNQSLRRHLRTCHWIEDQETLQCGYCEKLIPGKENLETHVTFYHRQETYLSDYDVDRKTEEFACNTCNNSYEEESLLRQHIKMEHTFDIFYKYCKMALLKQVEKNDNSKIKTVFYNCEFCNNMFTSVYEFKDHMKVNHDKEYCLSTCNVCFNKFYSKDTMSEHKKICLPPPNVNSCGHCDKLFTDVSSLEFHTRIFHPQAHIADSNITSTNDDIENAYKCKHCNRIYYSDRSLKHHIKLKHTTDEAMECEYCGKVCSNKYYLASHIKIVHTNNSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSNEALSIHLQTKHLAEDEIYKCEHCNLVFKGLDKFEQHNELCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHNEFDADELATFGSRHRVFNVECEDCIKNFQDDFYYNIYQKLKHLRDSIIFKCESCTSTYNSLEFSIQRYKLSHYDTCKSKMVLSELCTAEMSDEEASYSGFGSLHQMLPESTTNDVKLEPNEFLTEGEIKTEPMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -