Gmel021400.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292310.1:2268783-2273720[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.013 0.87 10.6 0.1 1 23 58 80 58 80 0.98 2 30 0.056 3.7 8.7 0.3 2 23 108 130 107 130 0.94 3 30 0.0066 0.43 11.6 1.2 2 23 151 173 150 173 0.94 4 30 0.00014 0.0091 16.9 4.0 1 23 178 200 178 201 0.95 5 30 0.0049 0.32 12.0 2.5 1 23 205 228 205 228 0.94 6 30 0.00093 0.061 14.3 1.9 2 23 231 253 230 253 0.96 7 30 4.8 3.1e+02 2.6 0.2 2 19 260 277 259 280 0.90 8 30 0.0012 0.078 13.9 1.6 1 23 331 354 331 354 0.97 9 30 0.0065 0.43 11.6 0.6 1 23 427 450 427 450 0.96 10 30 0.00015 0.0099 16.7 0.5 3 23 457 478 455 478 0.95 11 30 0.091 5.9 8.0 6.7 1 19 483 501 483 506 0.95 12 30 0.00099 0.064 14.2 0.6 2 23 512 534 511 534 0.94 13 30 0.015 0.98 10.5 8.7 1 23 538 561 538 561 0.97 14 30 0.1 6.7 7.8 1.6 2 23 568 589 567 589 0.96 15 30 0.0028 0.18 12.8 1.5 1 23 595 617 595 617 0.97 16 30 0.054 3.5 8.7 5.0 1 23 660 682 660 682 0.94 17 30 0.23 15 6.7 0.0 2 23 710 732 709 732 0.89 18 30 0.0058 0.38 11.8 0.2 2 23 753 775 752 775 0.95 19 30 0.00039 0.025 15.5 0.4 1 23 780 803 780 803 0.96 20 30 0.00076 0.049 14.5 0.6 1 23 808 831 808 831 0.98 21 30 0.00021 0.014 16.3 1.6 2 23 834 856 834 856 0.96 22 30 0.018 1.2 10.2 0.4 2 21 864 883 863 884 0.93 23 30 0.0011 0.07 14.1 1.5 1 23 939 962 939 962 0.98 24 30 1.3 86 4.3 0.0 2 23 1035 1058 1034 1058 0.92 25 30 0.00014 0.0092 16.8 1.0 3 23 1065 1086 1064 1086 0.94 26 30 0.0077 0.5 11.4 3.2 2 23 1091 1113 1090 1113 0.94 27 30 0.0045 0.29 12.1 2.4 1 23 1118 1141 1118 1141 0.97 28 30 6.9e-05 0.0045 17.8 5.3 1 23 1145 1168 1145 1168 0.97 29 30 0.00049 0.032 15.1 0.3 2 23 1175 1196 1174 1196 0.96 30 30 3e-05 0.0019 19.0 0.8 1 23 1202 1224 1202 1224 0.98
Sequence Information
- Coding Sequence
- ATGCGCGAAATATCTAGTGCGCTAGATTCTCATCCGATATTCCATCGTCCAAGAAAGATCCAAGATAAGAATGGACCGGGAAAATTACAGAACGCCAATAAACTAAGGCGGCAGAATCTGCAAACATTATTCAACAACACCTCAATGGTGCCTTTTAAATGGAGGGGAAAGTACATGTGCTTTTACTGCGGCGAAGACTTGGTTGCTTACGGGGATTTAAGGGCACATACAAAAACTCACGGCTTCTGTTCAGACAGAGATCGAGCTCTTAGACTAGTTCGCACCAGTGACACCGAAGTGAAAATCGATGTTTCTGATATCACTTGTAAACTATGCAATGAGTTTTTTAATACTTTCGACGAAATAGTCGTTCATTTGATCTCCAAACATAAACTGCCTTACAACAAAGAAGTCGAGTTGATAATATCCACTTATAGATTAGtagatttaaaatgtttattgtgcGATGAGAAATTCAAATACTTTAGTAAACTTATCACTCACGTTAATAATACGCACCCTACCAACTGTTTTATATGTTACGAATGTAATCagaaatttaataagaaaagaGACTTGGAGTCGCATTTAAGGACGCATCATCGGAAACAGTATCAATGTACAAAATGTACTGCACAATTTTCATCTAATGCTGCCTTATTGAAACACAAATCACATTCGCACACATCAACCTGTAATATTTGCTTTGAAACGTTCTCTACTAACAGCAAAAGGCTTAAACATATGAAACTTGAACACATTTCTGACGGGGTCTTACAGTGCGGGTTCTGTCTCAAAACGCTAAGTACTAAATTGGCGTTCCTAAACCACGCGGCGAAATGTACTATTAACGACAATTCTAAAACTGTAGACGAATGTATAACTGTAGAAGCCAACGAAAAGAAAGCCACCGTCTCTGAAATCCGAAATAATATCGCGTGTATTCTAAACATGTCCACGGCAATGCCCTTTAAATTTTTCATGAACAGATTCCGATGTTTTTATTGTCCAAAAGATTTTATTGAATGCGATGAACTCAAAGAACACACAATTACAGAACATCCAATTTGTGATACGAAACTCAAGTGTTTTAGGCTGCGCAACAGAGAAGACGGTATTAGAATCAAAGTTGATGTGGCGTCTTTATCTTGTAAGATGTGCATGGAAACAATGCAAGATTTAGATGCGCTAATAGATCATATTATTGTGGAACACAAAGCACAGTATATAAAATCGGTCGATAACAACATGCAACCTTTTACTTTACTAAAAGATAGTTTCTCGTGTCCTTTTTGTGAACAAGTATACAGATACTTTGGTacgctcttaaaacatgttaGCAGGGGTCACGCGGACAATAGaattatttgtgtacactgTGGCAGGTCGTTTAGGACTGATCCCAGTTTAAGAGCCCATATCTCGCGAAGTCACAGAATTAACAATTACAAGTGTAATCTTTGTGATCACGAATTTACAACAAATCACGCCTTACACACTCATTGCGGTCGAGTCCACGGCTACAGGACATCCGAGTGTTCGCAATGTCTTAAGAGATTTACGTCTCTATATTGGATGCAAAGGCATATGATTAATGCTCATGGTACAGGTCACAAATGTTCACACTGCAGCAAATTGTTCACCAAGAACTCTCACATGGTGAATCACGTTAGGCGTACACATCTGAAGGAGAAAAACGTGCAATGCGCCATCTGTTTCGAGAAATTTTTCGACGTACAACATTTGAGAACGCACACCGTAAAACACACAGGCGAACGGAATTTTCATTGTGATATTTGTGGCAAGAAATTCCTCTGGAAGAAAAACCTTAGGGCCCACATGGCGTCGCATAATAATTTGTTTTCAGATGAATATGCGCCTGGGCCTTACGAAGCGTGTGCCTCTGAGAGAAGGCGGAAAAACTTGAAAATACTGTTCAACAACACGACGATAATGCCATTCAAATGGCGCGGGAAATTTCTCTGTTTCCACTGCGCTAAGACGTACACTCAGTACCAGGATTTTAAAAAGCATACCAAAGCACACGGACACTGCACCACTAAGGATTACTCCTTGAAAATCATCAAAGGAAATCACATTGAGATAAAACTCGACATATCTGAAATTGTATGCGAAATATGCAATGAACCATTTGATAGTCTAAAAGAAATAGTTGACCATCTGATTGGAAAACATAAATTGGAATACGACAGAACAGTCGATATACCCTTCCAAGAGTACAAGCTAGTAGATTTGCGCTGTATGTACTGTGATGAGCAGTTTAGCTATTTTGGATATCTGGTTAACCACGTGAACGTTATGCACCCGCAGAACAGTTTCATTTGCGACGACTGCGGTGCGACTTTCAACAAGAAAAGGGATATGGCGTTACACTTAAGGAACTACCATCGCCAAGGAGGTTACCCTTGCGACCAATGCGCGCAGAACTTCGAAACTTATTACCTATTGCGCACGCATCAAAATACAGTGCACTTCCGGAGATGCAAGAAATGTAACATGAAGTTTGTGTCACTCACACTTCTACAAAAGCACATACGATTAGAACACACTCAAGATGACGGTACTCTAAAATGCTCATTTTGCGCAAAAGAATTCCGCTCTTCACAAGGTTTATCGCAACACATAAGTAAGTGTAAGGTGAAGACTCCGCAAATAGAACTGCAAGACAGTACCGCATTCGTCTCGGAACATAACCTGGAGCCCAAGAAGAAGCAGAACATTTTGCAGATACGACAAAACATTCAGTGCGTTCTCAATATGTCCACGGCTGTGCCTTTCAAGTTTTTCTCCAAATACACATGTTTTTATTGTTCAAAGAAGTTTATTGAATTCGAAGAATTAAGAGAGCACACAATGACGGAGCATCCCGTTTGTGATCTTAAGTCTAAATCTATGAGAAAATGTAAAGGCGAAAGGGTTAGCGTCAAAATTGATATAGCCTCGCTTGCTTGCAAACTATGCTGCCAGTCGATGTCTGAATTGGACTCTCTCATAGACCATTTGATATCCGAACACAAGGCCAATTACGATAAAGCTGTGACCGGCTGTTTGGAACCATTTAAGGTCATCAAAGACAGTATGCCGTGCCCGCTGTGTCCCGACAAAGTGTTCCGATACTTCGGTATACTGTTGCGTCACATGAACGCGGAACATAGTAACAATAATAGAATATGTGATTTCTGCGGACGTTGCTTCCGGAACGTGGCAAATTTAAACGTTCACATATCGTACACGCATACGGGTGCGTGCGAATGCAATGTATGCGGTATACAGTACAAGAATCAATGGTGCCTCGCCCGGCATAGGGCTAGGAAACATAACGCTAAGGACTACAAATGCCCGAAATGTCCAGACAAGTTTCCATCTCAGTACCACAAACAAAAGCACCTGATAAAGGTCCACGATATCGGACACAAGTGCAGTTACTGCGAGAAGATGTTTACGAGAAACTCCTTCATGAAAGATCACATAAGGCGGACGCATTTGAGGGAAAAGAACGTGCCATGTTCTGTTTGTAACGAGCggttttttgataattatttgctGAGAATGCACATGGTGAAACACGAGGGCGACAGGAAGTTTGTTTGCGCTGTATGCGGTAAAGCTTTCCTAAGGAAAAGCAATCTGCATTCTCATATGGATATGCACAAAAGGTACGGTCACCTCCAAGCGGCACTGTGA
- Protein Sequence
- MREISSALDSHPIFHRPRKIQDKNGPGKLQNANKLRRQNLQTLFNNTSMVPFKWRGKYMCFYCGEDLVAYGDLRAHTKTHGFCSDRDRALRLVRTSDTEVKIDVSDITCKLCNEFFNTFDEIVVHLISKHKLPYNKEVELIISTYRLVDLKCLLCDEKFKYFSKLITHVNNTHPTNCFICYECNQKFNKKRDLESHLRTHHRKQYQCTKCTAQFSSNAALLKHKSHSHTSTCNICFETFSTNSKRLKHMKLEHISDGVLQCGFCLKTLSTKLAFLNHAAKCTINDNSKTVDECITVEANEKKATVSEIRNNIACILNMSTAMPFKFFMNRFRCFYCPKDFIECDELKEHTITEHPICDTKLKCFRLRNREDGIRIKVDVASLSCKMCMETMQDLDALIDHIIVEHKAQYIKSVDNNMQPFTLLKDSFSCPFCEQVYRYFGTLLKHVSRGHADNRIICVHCGRSFRTDPSLRAHISRSHRINNYKCNLCDHEFTTNHALHTHCGRVHGYRTSECSQCLKRFTSLYWMQRHMINAHGTGHKCSHCSKLFTKNSHMVNHVRRTHLKEKNVQCAICFEKFFDVQHLRTHTVKHTGERNFHCDICGKKFLWKKNLRAHMASHNNLFSDEYAPGPYEACASERRRKNLKILFNNTTIMPFKWRGKFLCFHCAKTYTQYQDFKKHTKAHGHCTTKDYSLKIIKGNHIEIKLDISEIVCEICNEPFDSLKEIVDHLIGKHKLEYDRTVDIPFQEYKLVDLRCMYCDEQFSYFGYLVNHVNVMHPQNSFICDDCGATFNKKRDMALHLRNYHRQGGYPCDQCAQNFETYYLLRTHQNTVHFRRCKKCNMKFVSLTLLQKHIRLEHTQDDGTLKCSFCAKEFRSSQGLSQHISKCKVKTPQIELQDSTAFVSEHNLEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYTCFYCSKKFIEFEELREHTMTEHPVCDLKSKSMRKCKGERVSVKIDIASLACKLCCQSMSELDSLIDHLISEHKANYDKAVTGCLEPFKVIKDSMPCPLCPDKVFRYFGILLRHMNAEHSNNNRICDFCGRCFRNVANLNVHISYTHTGACECNVCGIQYKNQWCLARHRARKHNAKDYKCPKCPDKFPSQYHKQKHLIKVHDIGHKCSYCEKMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHEGDRKFVCAVCGKAFLRKSNLHSHMDMHKRYGHLQAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -