Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: IPP
Assembly: GCA_963978555.1
Location: OZ021706.1:19818944-19823709[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.1 16 7.4 0.1 2 23 371 393 370 393 0.92

2 9 0.09 14 7.5 4.9 1 23 399 421 399 421 0.99

3 9 0.089 14 7.5 2.0 1 23 427 449 427 449 0.96

4 9 0.046 7 8.5 6.6 1 23 455 477 455 477 0.99

5 9 4.5e-05 0.0069 17.9 2.7 1 23 482 504 482 504 0.98

6 9 0.11 17 7.3 2.8 2 23 511 532 510 532 0.96

7 9 0.012 1.8 10.3 3.6 1 23 537 561 537 561 0.98

8 9 1.2e-05 0.0018 19.8 1.7 1 23 567 589 567 589 0.97

9 9 0.0021 0.33 12.6 6.5 1 23 595 617 595 618 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.1	16	7.4	0.1	2	23	371	393	370	393	0.92
2	9	0.09	14	7.5	4.9	1	23	399	421	399	421	0.99
3	9	0.089	14	7.5	2.0	1	23	427	449	427	449	0.96
4	9	0.046	7	8.5	6.6	1	23	455	477	455	477	0.99
5	9	4.5e-05	0.0069	17.9	2.7	1	23	482	504	482	504	0.98
6	9	0.11	17	7.3	2.8	2	23	511	532	510	532	0.96
7	9	0.012	1.8	10.3	3.6	1	23	537	561	537	561	0.98
8	9	1.2e-05	0.0018	19.8	1.7	1	23	567	589	567	589	0.97
9	9	0.0021	0.33	12.6	6.5	1	23	595	617	595	618	0.96

Sequence Information

Coding Sequence: ATGATTGCCGTAGAAGAATATCCAACTATAACATTCcaaaattctaattttccagggactttatttcaaaagttatttGAACAAAAGAAAGCCAGCAAGTTCTGTGATATTACCCTTTTCGTTAATAACAGAATTATAAAAGCACATAGAAATGTTCTTGCTTGCAGCTCTCCttattttgattcaattttaaAGAACCATAAAATACAACGGGAGAAACTAGAAATTTCATGTACTGATAGTACTATTTTCAATGCTGTGCTTAATTTCATGTACACAGGAGAAATAAGTATAAATCATTCAATAATAGAAGAATTACTGAGACTTGCTGACCACtttatattaacaacaattgTAGAATACTGTATAGAATTCTTAGGATCCAAACTAAATGTAAACAAttgcctttttacattttttctttcaaaGCAATATAAGTTGAAGCATTTAAATGATGTTATAGAAGGTTGGGTGGCAAAACATATTGATGATATATGCAAGGGAGAGGAAATTCTTAGACTAGACAAAAAGCAACTCCAAGACTTTTTTACCAACAAGCATTTTGTTTTAACAACTACAACAGCACTTAACTTGTTATCCCTATGGATTCAGAAGGATttagaaaaaagagaaaaatattttgaccaGCTCATCAAATGTTTTCCTACAAACAATTTAGAACCTATAGAAGTTTTTAAACATTTAGAAACAAATAATCTATATAACAAGAGTGAGTTTTGTTTATATGTAATTTTGGACTATTTAATAGTAAATAATTGGATGCTTTCAAATTTCAAGACCAGATATGATGTTTTACATGTAAAATATGGTCAGATTTCGCAAGATAAAGTTATGGACAATGATATAAAGCAAAAGAAAATTATAGTTACAGAAAAATCAGATACAACCATTAGGAATTCTGTAATAGTTAAAGCAAAATTAagaaatagaaaacaaaatattttaaagaaacTAATGCTTTTTGGACTGCAGCCTAGTGTGAGAATGGCAGCTTTGAAAATGCTTATTTGCAAGAAAAAGTCATTATTACTAGacgatgaagaaaaagaagaatatgaaGtTGCAGATTCTGATGAAAAAGTTGGTATCAAATGCCCGATATGTTTTACTACGATTAATGACAGCTTGCTTCTAGAACAGCATTTAGCATTAAGTCATGCCAAGAACGTTACTTACAAGTGCGGTCTGTGTTCATTCGTTTGTCAGTATCATGGAGATTACTTGAATCATATGAAAACTCATTTCAATGGACCACCTTTCAAATGTGATTTTTGTAACTACAACGTTGAACAAATATCTAAACTAATCACTCATCGTGCCCATCACTTGGACGAATCTATCTACCAGTGTACATTCTGCACGTTCAAATGCCGCCTTAAACAAAACTACATCTCTCATATGAAAATGCACACCCCAGAGATGTTTAAATGTGATCATTGTTCAAAAACCTTCAGATTTGGACAAAACCTCGAAGCACACCTTCTAAGTCATTCATCCGAGAAGAATTTGTCTTGCGATCTATGTGGATTCCATACTAAATTCATTAGTCATATGATTGCCCACAAAAGAATACATGCTGCTGATATATATCGCTGTTCATATCCTCATTGTAAATACACCACATCGAAGAAAACTCAATTAGCCAGTCACGCTAAAAGCCACAACGGAGTGAGGCCGCACGTGTGCGGTGTTTGTGGTCGAAGCTTCATGGAAAAATCTCATCTGGTACGACACGAACGTATCCATTTAGAAGAAAAACCTTTCAAATGTTCTCATTGCGATTATGCTAGTTCCAGAAGGGATAAACTTAAGGAACATTACACTAGACATCACGGAGAAAACGCTTCGGCGAAAGTACCGTATAAAGCGAGACCGTTGAGGAATAATGGAGGAACGAATAAATCAAAACCTCAGAATACGTCGGATTTGCCTACCACAACTACAAATACCAATATAAATTTCACTCAATCCAACAGTACAACAGTAGCACCTTCAACGCTGGGCTCCGAAATTCAGGAGTTGATTATGCATCACCAAAATCACGCCACACCATCAGCAACTAACCTAACCGTACTGAACTCGACGTATCATCACTTTAGCGCTGGTGAATCTCCCGATTTCCATCACGCTCACGCCGTTCATACTCATAACATTCACAATCAAATATTAGGAACTACCGCGGGTCATAATCAAAGATCAGCAAGCAATAATACACAACATGCCAATAATAACCTCGTCAATCATCACATGTTGACAGCTGCAGCCGCTGTACGTTCGAATCCTACGACAGCAACTTCTACAGCTGCGGCTGTAGCAGCTGCTATGATGTTGGACCCACGATTCCATCATAATTCCGGAgtACCGTACCCTCCCAATACTCCAGTATCTATGGCAATGGCGGCTGTTCAATCAACTCAACAAAATCAGTCTTCGGCGCAGCAAACTTCTGATTATCCTTCAACATTGCAAAATTGCATGCCTTTATTCTAG
Protein Sequence: MIAVEEYPTITFQNSNFPGTLFQKLFEQKKASKFCDITLFVNNRIIKAHRNVLACSSPYFDSILKNHKIQREKLEISCTDSTIFNAVLNFMYTGEISINHSIIEELLRLADHFILTTIVEYCIEFLGSKLNVNNCLFTFFLSKQYKLKHLNDVIEGWVAKHIDDICKGEEILRLDKKQLQDFFTNKHFVLTTTTALNLLSLWIQKDLEKREKYFDQLIKCFPTNNLEPIEVFKHLETNNLYNKSEFCLYVILDYLIVNNWMLSNFKTRYDVLHVKYGQISQDKVMDNDIKQKKIIVTEKSDTTIRNSVIVKAKLRNRKQNILKKLMLFGLQPSVRMAALKMLICKKKSLLLDDEEKEEYEVADSDEKVGIKCPICFTTINDSLLLEQHLALSHAKNVTYKCGLCSFVCQYHGDYLNHMKTHFNGPPFKCDFCNYNVEQISKLITHRAHHLDESIYQCTFCTFKCRLKQNYISHMKMHTPEMFKCDHCSKTFRFGQNLEAHLLSHSSEKNLSCDLCGFHTKFISHMIAHKRIHAADIYRCSYPHCKYTTSKKTQLASHAKSHNGVRPHVCGVCGRSFMEKSHLVRHERIHLEEKPFKCSHCDYASSRRDKLKEHYTRHHGENASAKVPYKARPLRNNGGTNKSKPQNTSDLPTTTTNTNINFTQSNSTTVAPSTLGSEIQELIMHHQNHATPSATNLTVLNSTYHHFSAGESPDFHHAHAVHTHNIHNQILGTTAGHNQRSASNNTQHANNNLVNHHMLTAAAAVRSNPTTATSTAAAVAAAMMLDPRFHHNSGVPYPPNTPVSMAMAAVQSTQQNQSSAQQTSDYPSTLQNCMPLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00735939; iTF_00459081; iTF_00911204; iTF_00911461; iTF_00459321; iTF_01106489; iTF_01106745; iTF_00437597; iTF_00437174; iTF_00026206; iTF_00026420;
90% Identity: iTF_00911461;
80% Identity: iTF_00735939;